2AHJ
| NITRILE HYDRATASE COMPLEXED WITH NITRIC OXIDE | 分子名称: | 1,4-DIETHYLENE DIOXIDE, FE (III) ION, NITRIC OXIDE, ... | 著者 | Nagashima, S, Nakasako, M, Dohmae, N, Tsujimura, M, Takio, K, Odaka, M, Yohda, M, Kamiya, N, Endo, I. | 登録日 | 1997-12-24 | 公開日 | 1999-01-27 | 最終更新日 | 2022-12-21 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Novel non-heme iron center of nitrile hydratase with a claw setting of oxygen atoms. Nat.Struct.Biol., 5, 1998
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5B56
| Crystal structure of HIV-1 VPR C-Terminal domain and DIBB-M-Importin-Alpha2 complex | 分子名称: | Importin subunit alpha-1, Protein Vpr | 著者 | Miyatake, H, Sanjoh, A, Matusda, G, Murakami, T, Murakami, H, Hagiwara, K, Yokoyama, M, Sato, H, Miyamoto, Y, Dohmae, N, Aida, Y. | 登録日 | 2016-04-25 | 公開日 | 2016-06-01 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Molecular Mechanism of HIV-1 Vpr for Binding to Importin-alpha J.Mol.Biol., 428, 2016
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5H0Q
| Crystal structure of lipid binding protein Nakanori at 1.5A | 分子名称: | Lipid binding protein | 著者 | Makino, A, Abe, M, Ishitsuka, R, Murate, M, Kishimoto, T, Sakai, S, Hullin-Matsuda, F, Shimada, Y, Inaba, T, Miyatake, H, Tanaka, H, Kurahashi, A, Pack, C.G, Kasai, R.S, Kubo, S, Schieber, N.L, Dohmae, N, Tochio, N, Hagiwara, K, Sasaki, Y, Aida, Y, Fujimori, F, Kigawa, T, Nishikori, K, Parton, R.G, Kusumi, A, Sako, Y, Anderluh, G, Yamashita, M, Kobayashi, T, Greimel, P, Kobayashi, T. | 登録日 | 2016-10-06 | 公開日 | 2016-10-19 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.501 Å) | 主引用文献 | A novel sphingomyelin/cholesterol domain-specific probe reveals the dynamics of the membrane domains during virus release and in Niemann-Pick type C FASEB J., 31, 2017
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4P79
| Crystal structure of mouse claudin-15 | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Claudin-15 | 著者 | Suzuki, H, Nishizawa, T, Tani, K, Yamazaki, Y, Tamura, A, Ishitani, R, Dohmae, N, Tsukita, S, Nureki, O, Fujiyoshi, Y. | 登録日 | 2014-03-26 | 公開日 | 2014-04-30 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Crystal structure of a claudin provides insight into the architecture of tight junctions. Science, 344, 2014
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5GLH
| Human endothelin receptor type-B in complex with ET-1 | 分子名称: | Endothelin Receptor Subtype-B, Peptide from Endothelin-1 | 著者 | Shihoya, W, Nishizawa, T, Okuta, A, Tani, K, Fujiyoshi, Y, Dohmae, N, Nureki, O, Doi, T. | 登録日 | 2016-07-11 | 公開日 | 2016-09-07 | 最終更新日 | 2020-02-26 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Activation mechanism of endothelin ETB receptor by endothelin-1. Nature, 537, 2016
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5GLI
| Human endothelin receptor type-B in the ligand-free form | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Endothelin Receptor Subtype-B, OLEIC ACID, ... | 著者 | Shihoya, W, Nishizawa, T, Okuta, A, Tani, K, Fujiyoshi, Y, Dohmae, N, Nureki, O, Doi, T. | 登録日 | 2016-07-11 | 公開日 | 2016-09-07 | 最終更新日 | 2020-02-26 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Activation mechanism of endothelin ETB receptor by endothelin-1. Nature, 537, 2016
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2FHO
| NMR solution structure of the human spliceosomal protein complex p14-SF3b155 | 分子名称: | spliceosomal protein SF3b155, spliceosomal protein p14 | 著者 | Kuwasako, K, Dohmae, N, Inoue, M, Shirouzu, M, Guntert, P, Seraphin, B, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2005-12-26 | 公開日 | 2006-12-26 | 最終更新日 | 2024-05-29 | 実験手法 | SOLUTION NMR | 主引用文献 | NMR solution structure of the human spliceosomal protein complex p14-SF3b155 To be Published
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2ZCF
| Mutational study on Alpha-Gln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771 | 分子名称: | FE (III) ION, MAGNESIUM ION, Nitrile hydratase subunit alpha, ... | 著者 | Takarada, H, Kawano, Y, Hashimoto, K, Nakayama, H, Ueda, S, Yohda, M, Kamiya, N, Dohmae, N, Maeda, M, Odaka, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-11-08 | 公開日 | 2007-11-20 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.43 Å) | 主引用文献 | Mutational study on alphaGln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771 Biosci.Biotechnol.Biochem., 70, 2006
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7Y3F
| Structure of the Anabaena PSI-monomer-IsiA supercomplex | 分子名称: | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... | 著者 | Nagao, R, Kato, K, Hamaguchi, T, Kawakami, K, Yonekura, K, Shen, J.R. | 登録日 | 2022-06-10 | 公開日 | 2023-03-01 | 最終更新日 | 2024-05-08 | 実験手法 | ELECTRON MICROSCOPY (2.62 Å) | 主引用文献 | Structure of a monomeric photosystem I core associated with iron-stress-induced-A proteins from Anabaena sp. PCC 7120. Nat Commun, 14, 2023
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4YBG
| Crystal structure of the MAEL domain of Drosophila melanogaster Maelstrom | 分子名称: | 1,2-ETHANEDIOL, ACETATE ION, Protein maelstrom, ... | 著者 | Matsumoto, N, Ishitani, R, Nishimasu, H, Nureki, O. | 登録日 | 2015-02-18 | 公開日 | 2015-04-29 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.602 Å) | 主引用文献 | Crystal Structure and Activity of the Endoribonuclease Domain of the piRNA Pathway Factor Maelstrom Cell Rep, 11, 2015
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6KR6
| Crystal structure of Drosophila Piwi | 分子名称: | MERCURY (II) ION, Protein piwi, ZINC ION, ... | 著者 | Yamaguchi, S, Oe, A, Yamashita, K, Hirano, S, Mastumoto, N, Ishitani, R, Nishimasu, H, Nureki, O. | 登録日 | 2019-08-21 | 公開日 | 2020-02-19 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Crystal structure of Drosophila Piwi. Nat Commun, 11, 2020
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6KMW
| Structure of PSI from H. hongdechloris grown under white light condition | 分子名称: | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... | 著者 | Kato, K, Nagao, R, Shen, J.R, Miyazaki, N, Akita, F. | 登録日 | 2019-08-01 | 公開日 | 2020-01-15 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (2.35 Å) | 主引用文献 | Structural basis for the adaptation and function of chlorophyll f in photosystem I. Nat Commun, 11, 2020
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3UG0
| Crystal structure of a Trp-less green fluorescent protein translated by the simplified genetic code | 分子名称: | Green fluorescent protein | 著者 | Kawahara-Kobayashi, A, Araiso, Y, Matsuda, T, Yokoyama, S, Kigawa, T, Nureki, O, Kiga, D. | 登録日 | 2011-11-02 | 公開日 | 2012-10-17 | 最終更新日 | 2023-12-06 | 実験手法 | X-RAY DIFFRACTION (2.093 Å) | 主引用文献 | Simplification of the genetic code: restricted diversity of genetically encoded amino acids. Nucleic Acids Res., 40, 2012
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3UFZ
| Crystal structure of a Trp-less green fluorescent protein translated by the universal genetic code | 分子名称: | Green fluorescent protein | 著者 | Kawahara-Kobayashi, A, Araiso, Y, Matsuda, T, Yokoyama, S, Kigawa, T, Nureki, O, Kiga, D. | 登録日 | 2011-11-02 | 公開日 | 2012-10-17 | 最終更新日 | 2023-12-06 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Simplification of the genetic code: restricted diversity of genetically encoded amino acids. Nucleic Acids Res., 40, 2012
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5I20
| Crystal structure of protein | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, SULFATE ION, Uncharacterized protein | 著者 | Ishitani, R, Nureki, O. | 登録日 | 2016-02-08 | 公開日 | 2016-06-01 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Structural basis for amino acid export by DMT superfamily transporter YddG. Nature, 534, 2016
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5ZSU
| Structure of the human homo-hexameric LRRC8A channel at 4.25 Angstroms | 分子名称: | Volume-regulated anion channel subunit LRRC8A | 著者 | Kasuya, G, Nakane, T, Yokoyama, T, Shirouzu, M, Ishitani, R, Nureki, O. | 登録日 | 2018-04-29 | 公開日 | 2018-08-15 | 最終更新日 | 2018-09-26 | 実験手法 | ELECTRON MICROSCOPY (4.25 Å) | 主引用文献 | Cryo-EM structures of the human volume-regulated anion channel LRRC8. Nat. Struct. Mol. Biol., 25, 2018
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7VD6
| Structure of S1M1-type FCPII complex from diatom | 分子名称: | (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ... | 著者 | Nagao, R, Kato, K, Akita, F, Miyazaki, N, Shen, J.R. | 登録日 | 2021-09-06 | 公開日 | 2022-03-02 | 最終更新日 | 2024-06-19 | 実験手法 | ELECTRON MICROSCOPY (2.8 Å) | 主引用文献 | Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex Nat Commun, 13, 2022
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7VD5
| Structure of C2S2M2-type PSII-FCPII supercomplex from diatom | 分子名称: | (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ... | 著者 | Nagao, R, Kato, K, Akita, F, Miyazaki, N, Shen, J.R. | 登録日 | 2021-09-06 | 公開日 | 2022-03-02 | 最終更新日 | 2022-09-14 | 実験手法 | ELECTRON MICROSCOPY (2.5 Å) | 主引用文献 | Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex Nat Commun, 13, 2022
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8WEY
| PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137) | 分子名称: | (1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{R} )-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, BETA-CAROTENE, ... | 著者 | Kato, K, Hamaguchi, T, Nakajima, Y, Kawakami, K, Yonekura, K, Shen, J.R, Nagao, R. | 登録日 | 2023-09-19 | 公開日 | 2024-02-14 | 最終更新日 | 2024-03-13 | 実験手法 | ELECTRON MICROSCOPY (1.92 Å) | 主引用文献 | The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs. Proc.Natl.Acad.Sci.USA, 121, 2024
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6L4U
| Structure of the PSI-FCPI supercomplex from diatom | 分子名称: | (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... | 著者 | Nagao, R, Kato, K, Miyazaki, N, Akita, F, Shen, J.R. | 登録日 | 2019-10-21 | 公開日 | 2020-05-20 | 実験手法 | ELECTRON MICROSCOPY (2.4 Å) | 主引用文献 | Structure of photosystem I-light-harvesting supercomplex from a red-lineage diatom Nat Commun, 2020
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6L4T
| Structure of the peripheral FCPI from diatom | 分子名称: | (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... | 著者 | Nagao, R, Kato, K, Miyazaki, N, Akita, F, Shen, J.R. | 登録日 | 2019-10-21 | 公開日 | 2020-05-20 | 実験手法 | ELECTRON MICROSCOPY (2.6 Å) | 主引用文献 | Structure of photosystem I-light-harvesting supercomplex from a red-lineage diatom Nat Commun, 2020
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6KOG
| Ketosynthase domain in tenuazonic acid synthetase 1 (TAS1). | 分子名称: | GLYCEROL, Hybrid PKS-NRPS synthetase TAS1, SULFATE ION | 著者 | Yun, C.S, Nishimoto, K, Motoyama, T, Hino, T, Nagano, S, Osada, H. | 登録日 | 2019-08-10 | 公開日 | 2020-07-01 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.68 Å) | 主引用文献 | Unique features of the ketosynthase domain in a nonribosomal peptide synthetase-polyketide synthase hybrid enzyme, tenuazonic acid synthetase 1. J.Biol.Chem., 295, 2020
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8K77
| Cryo-EM structure of SV2A in complex with BoNT/A2 Hc and brivaracetam | 分子名称: | (2S)-2-[(4R)-2-oxidanylidene-4-propyl-pyrrolidin-1-yl]butanamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Yamagata, A. | 登録日 | 2023-07-26 | 公開日 | 2024-05-01 | 最終更新日 | 2024-05-08 | 実験手法 | ELECTRON MICROSCOPY (3.11 Å) | 主引用文献 | Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nat Commun, 15, 2024
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4L3O
| Crystal Structure of SIRT2 in complex with the macrocyclic peptide S2iL5 | 分子名称: | 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, NAD-dependent protein deacetylase sirtuin-2, ... | 著者 | Yamagata, K, Nishimasu, H, Ishitani, R, Nureki, O. | 登録日 | 2013-06-06 | 公開日 | 2014-02-19 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.518 Å) | 主引用文献 | Structural Basis for Potent Inhibition of SIRT2 Deacetylase by a Macrocyclic Peptide Inducing Dynamic Structural Change Structure, 22, 2013
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4KPP
| Crystal Structure of H+/Ca2+ Exchanger CAX | 分子名称: | (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CALCIUM ION, OLEIC ACID, ... | 著者 | Nishizawa, T, Ishitani, R, Nureki, O. | 登録日 | 2013-05-14 | 公開日 | 2013-06-26 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structural basis for the counter-transport mechanism of a H+/Ca2+ exchanger. Science, 341, 2013
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