Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3PQK
DownloadVisualize
BU of 3pqk by Molmil
Crystal Structure of the transcriptional repressor BigR from Xylella fastidiosa
分子名称: Biofilm growth-associated repressor
著者Benedetti, C.E, Guimaraes, B.G.
登録日2010-11-26
公開日2011-06-01
最終更新日2011-08-03
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Plant Pathogenic Bacteria Utilize Biofilm Growth-associated Repressor (BigR), a Novel Winged-helix Redox Switch, to Control Hydrogen Sulfide Detoxification under Hypoxia.
J.Biol.Chem., 286, 2011
7UXX
DownloadVisualize
BU of 7uxx by Molmil
Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal domain
分子名称: ACETATE ION, GLYCEROL, Nucleoprotein
著者Bezerra, E.H.S, Tonoli, C.C.C, Soprano, A.S, Franchini, K.G, Trivella, D.B.B, Benedetti, C.E.
登録日2022-05-06
公開日2022-06-22
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Discovery and structural characterization of chicoric acid as a SARS-CoV-2 nucleocapsid protein ligand and RNA binding disruptor.
Sci Rep, 12, 2022
7UXZ
DownloadVisualize
BU of 7uxz by Molmil
Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal domain complexed with Chicoric acid
分子名称: (2R,3R)-2,3-bis{[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}butanedioic acid, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Bezerra, E.H.S, Tonoli, C.C.C, Soprano, A.S, Franchini, K.G, Trivella, D.B.B, Benedetti, C.E.
登録日2022-05-06
公開日2022-06-22
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.733 Å)
主引用文献Discovery and structural characterization of chicoric acid as a SARS-CoV-2 nucleocapsid protein ligand and RNA binding disruptor.
Sci Rep, 12, 2022
3PQJ
DownloadVisualize
BU of 3pqj by Molmil
Crystal Structure of the transcriptional repressor BigR from Xylella fastidiosa
分子名称: Biofilm growth-associated repressor
著者Guimaraes, B.G, Benedetti, C.E.
登録日2010-11-26
公開日2011-06-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Plant Pathogenic Bacteria Utilize Biofilm Growth-associated Repressor (BigR), a Novel Winged-helix Redox Switch, to Control Hydrogen Sulfide Detoxification under Hypoxia.
J.Biol.Chem., 286, 2011
4JJM
DownloadVisualize
BU of 4jjm by Molmil
Structure of a cyclophilin from Citrus sinensis (CsCyp) in complex with cyclosporin A
分子名称: Peptidyl-prolyl cis-trans isomerase, cyclosporin A
著者Campos, B.M, Ambrosio, A.L.B, Souza, T.A.C.B, Barbosa, J.A.R.G, Benedetti, C.E.
登録日2013-03-08
公開日2013-06-12
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献A redox 2-cys mechanism regulates the catalytic activity of divergent cyclophilins.
Plant Physiol., 162, 2013
8FWN
DownloadVisualize
BU of 8fwn by Molmil
Crystal structure of SARS-CoV-2 papain-like protease C111S mutant
分子名称: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
著者Bezerra, E.H.S, Soprano, A.S, Tonoli, C.C.C, Prado, P.F.V, da Silva, J.C, Franchini, K.G, Trivella, D.B.B, Benedetti, C.E.
登録日2023-01-23
公開日2023-05-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of SARS-CoV-2 papain-like protease C111S mutant
To Be Published
8FWO
DownloadVisualize
BU of 8fwo by Molmil
Crystal structure of SARS-CoV-2 papain-like protease
分子名称: CHLORIDE ION, GLYCEROL, PHOSPHATE ION, ...
著者Bezerra, E.H.S, Soprano, A.S, Tonoli, C.C.C, Prado, P.F.V, da Silva, J.C, Franchini, K.G, Trivella, D.B.B, Benedetti, C.E.
登録日2023-01-23
公開日2024-01-31
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of SARS-CoV-2 papain-like protease
To Be Published
2PXG
DownloadVisualize
BU of 2pxg by Molmil
NMR Solution Structure of OmlA
分子名称: Outer membrane protein
著者Vanini, M.M.T, Pertinhez, T.A, Sforca, M.L, Spisni, A, Benedetti, C.E.
登録日2007-05-14
公開日2008-01-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The solution structure of the outer membrane lipoprotein OmlA from Xanthomonas axonopodis pv. citri reveals a protein fold implicated in protein-protein interaction.
Proteins, 71, 2008
5U50
DownloadVisualize
BU of 5u50 by Molmil
Crystal structure of citrus MAF1 in space group C 2 2 21
分子名称: Repressor of RNA polymerase III transcription
著者Soprano, A.S, Giuseppe, P.O, Nascimento, A.F.Z, Benedetti, C.E, Murakami, M.T.
登録日2016-12-06
公開日2017-07-19
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.902 Å)
主引用文献Crystal structure of citrus MAF1 in space group C 2 2 21
To Be Published
5U4Z
DownloadVisualize
BU of 5u4z by Molmil
Crystal structure of citrus MAF1 in space group P 31 2 1
分子名称: Repressor of RNA polymerase III transcription, SULFATE ION
著者Soprano, A.S, Giuseppe, P.O, Nascimento, A.F.Z, Benedetti, C.E, Murakami, M.T.
登録日2016-12-06
公開日2017-07-19
最終更新日2020-01-01
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Crystal structure of citrus MAF1 in space group P 31 2 1
To Be Published
6WQ6
DownloadVisualize
BU of 6wq6 by Molmil
Xanthomonas citri Methionyl-tRNA synthetase in complex with methionine
分子名称: METHIONINE, Methionine--tRNA ligase, ZINC ION
著者Mercaldi, G.F, Benedetti, C.E.
登録日2020-04-28
公開日2021-04-21
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Molecular basis for diaryldiamine selectivity and competition with tRNA in a type 2 methionyl-tRNA synthetase from a Gram-negative bacterium.
J.Biol.Chem., 296, 2021
6WQS
DownloadVisualize
BU of 6wqs by Molmil
Xanthomonas citri Methionyl-tRNA synthetase in complex with REP8839
分子名称: 2-{[3-({[4-bromo-5-(1-fluoroethenyl)-3-methylthiophen-2-yl]methyl}amino)propyl]amino}quinolin-4(1H)-one, Methionine--tRNA ligase, ZINC ION
著者Mercaldi, G.F, Benedetti, C.E.
登録日2020-04-29
公開日2021-04-21
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Molecular basis for diaryldiamine selectivity and competition with tRNA in a type 2 methionyl-tRNA synthetase from a Gram-negative bacterium.
J.Biol.Chem., 296, 2021
6WQT
DownloadVisualize
BU of 6wqt by Molmil
Xanthomonas citri Methionyl-tRNA synthetase in complex with REP3123
分子名称: 5-[(3-{[(4R)-6,8-dibromo-3,4-dihydro-2H-1-benzopyran-4-yl]amino}propyl)amino]thieno[3,2-b]pyridin-7(6H)-one, Methionine--tRNA ligase, ZINC ION
著者Mercaldi, G.F, Benedetti, C.E.
登録日2020-04-29
公開日2021-04-21
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Molecular basis for diaryldiamine selectivity and competition with tRNA in a type 2 methionyl-tRNA synthetase from a Gram-negative bacterium.
J.Biol.Chem., 296, 2021
6WQI
DownloadVisualize
BU of 6wqi by Molmil
Xanthomonas citri Methionyl-tRNA synthetase (apo)
分子名称: Methionine--tRNA ligase, ZINC ION
著者Mercaldi, G.F, Benedetti, C.E.
登録日2020-04-28
公開日2021-04-21
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Molecular basis for diaryldiamine selectivity and competition with tRNA in a type 2 methionyl-tRNA synthetase from a Gram-negative bacterium.
J.Biol.Chem., 296, 2021
2M70
DownloadVisualize
BU of 2m70 by Molmil
Structural determination of the Citrus sinensis Poly(A)-Binding Protein CsPABP1
分子名称: Poly(A)-binding protein 1
著者Sforca, M.L, Domingues, M.N, Zeri, A.C.M, Benedetti, C.E.
登録日2013-04-16
公開日2014-04-16
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural determination of the Citrus sinensis Poly(A)-Binding Protein CsPABP1
To be Published
2KQA
DownloadVisualize
BU of 2kqa by Molmil
The solution structure of the fungal elicitor Cerato-Platanin
分子名称: Cerato-platanin
著者Oliveira, A.L, Gallo, M, Pazzagli, L, Cappugi, G, Scala, A, Cicero, D.O, Pantera, B, Spisni, A, Benedetti, C.E, Pertinhez, T.A.
登録日2009-11-03
公開日2011-03-23
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献The solution structure of the fungal elicitor Cerato-Platanin
To be Published
2NUH
DownloadVisualize
BU of 2nuh by Molmil
Crystal structure of CutA from the phytopathgen bacterium Xylella fastidiosa
分子名称: IMIDAZOLE, Periplasmic divalent cation tolerance protein
著者Medrano, F.J, Benedetti, C.E.
登録日2006-11-09
公開日2007-01-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献Crystal structure of CutA from the phytopathgen bacterium Xylella fastidiosa
To be published
2KQ5
DownloadVisualize
BU of 2kq5 by Molmil
Solution NMR structure of a section of the repeat domain of the type III effector protein PthA
分子名称: Avirulence protein
著者Neves, J.L, Sforca, M.L, Murakami, M.T, Benedetti, C.E, Zeri, A.C.
登録日2009-10-28
公開日2010-09-01
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献An NMR-based structural model of the PthA repeat region reveals a TPR fold that would account for protein-protein and protein-DNA interactions
To be Published
7KMP
DownloadVisualize
BU of 7kmp by Molmil
Crystal structure of the GH31 alpha-xylosidase (Xac1773) from Xanthomonas citri
分子名称: Alpha-xylosidase, GLYCEROL, POTASSIUM ION
著者Vieira, P.S, Murakami, M.T.
登録日2020-11-03
公開日2021-05-26
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.556 Å)
主引用文献Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Nature Communications, 12, 2021
7KMM
DownloadVisualize
BU of 7kmm by Molmil
Crystal structure of XAC1771, a novel carbohydrate acetylesterase from Xanthomonas citri
分子名称: Sialic acid-specific 9-O-acetylesterase, ZINC ION
著者Vieira, P.S, Murakami, M.T.
登録日2020-11-03
公開日2021-05-26
最終更新日2021-07-07
実験手法X-RAY DIFFRACTION (1.899 Å)
主引用文献Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Nature Communications, 12, 2021
7KMO
DownloadVisualize
BU of 7kmo by Molmil
Crystal structure of the GH35 beta-galactosidase (Xac1772) from Xanthomonas citri in complex with galactose
分子名称: Beta-galactosidase, GH35, GLYCEROL, ...
著者Vieira, P.S, Murakami, M.T.
登録日2020-11-03
公開日2021-05-26
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.753 Å)
主引用文献Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Nature Communications, 12, 2021
7KMQ
DownloadVisualize
BU of 7kmq by Molmil
Crystal structure of the GH95 alpha-L-1,2-fucosidase (Xac1774) from Xanthomonas citri
分子名称: CALCIUM ION, GLYCEROL, Glyco_hyd_65N_2 domain-containing protein
著者Vieira, P.S, Murakami, M.T.
登録日2020-11-03
公開日2021-05-26
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.045 Å)
主引用文献Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Nature Communications, 12, 2021
7KNC
DownloadVisualize
BU of 7knc by Molmil
Crystal structure of the GH31 alpha-xylosidase (Xac1773) from Xanthomonas citri
分子名称: Alpha-xylosidase, GLYCEROL, POTASSIUM ION, ...
著者Vieira, P.S, Murakami, M.T.
登録日2020-11-04
公開日2021-05-26
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.873 Å)
主引用文献Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Nature Communications, 12, 2021
7KN8
DownloadVisualize
BU of 7kn8 by Molmil
Crystal structure of the GH74 xyloglucanase from Xanthomonas campestris (Xcc1752)
分子名称: 1,2-ETHANEDIOL, Cellulase, IODIDE ION, ...
著者Araujo, E.A, Vieira, P.S, Murakami, M.T, Polikarpov, I.
登録日2020-11-04
公開日2021-05-26
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Nature Communications, 12, 2021
7KMN
DownloadVisualize
BU of 7kmn by Molmil
Crystal structure of XAC1772, a GH35 xyloglucan-active beta-galactosidase from Xanthomonas citri
分子名称: Beta-galactosidase, GH35 family, SULFATE ION
著者Vieira, P.S, Murakami, M.T.
登録日2020-11-03
公開日2021-05-26
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Nature Communications, 12, 2021

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon