3BVN
 
 | | High resolution crystal structure of HLA-B*1402 in complex with the latent membrane protein 2 peptide (LMP2) of Epstein-Barr virus | | 分子名称: | Beta-2-microglobulin, HLA class I histocompatibility antigen, B*1402 alpha chain, ... | | 著者 | Kumar, P, Vahedi-Faridi, A, Saenger, W, Uchanska-Ziegler, B, Ziegler, A. | | 登録日 | 2008-01-07 | | 公開日 | 2009-02-03 | | 最終更新日 | 2023-08-30 | | 実験手法 | X-RAY DIFFRACTION (2.55 Å) | | 主引用文献 | Structural basis for T cell alloreactivity among three HLA-B14 and HLA-B27 antigens
J.Biol.Chem., 284, 2009
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3BXN
 | | The high resolution crystal structure of HLA-B*1402 complexed with a Cathepsin A signal sequence peptide, pCatA | | 分子名称: | Cathepsin A signal sequence octapeptide, GLYCEROL, HLA-B*1402 extracellular domain, ... | | 著者 | Kumar, P, Vahedi-Faridi, A, Saenger, W, Uchanska-Ziegler, B, Ziegler, A. | | 登録日 | 2008-01-14 | | 公開日 | 2009-02-03 | | 最終更新日 | 2023-08-30 | | 実験手法 | X-RAY DIFFRACTION (1.864 Å) | | 主引用文献 | Structural basis for T cell alloreactivity among three HLA-B14 and HLA-B27 antigens
J.Biol.Chem., 284, 2009
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6A80
 | | Crystal Structure of putative amino acid binding periplasmic ABC transporter protein from Candidatus Liberibacter asiaticus in complex with cystine | | 分子名称: | 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ... | | 著者 | Kumar, P, Kesari, P, Ghosh, D.K, Kumar, P, Sharma, A.K. | | 登録日 | 2018-07-05 | | 公開日 | 2019-06-12 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.56 Å) | | 主引用文献 | Crystal structures of a putative periplasmic cystine-binding protein from Candidatus Liberibacter asiaticus: insights into an adapted mechanism of ligand binding.
Febs J., 286, 2019
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6A8S
 | | Crystal Structure of the putative amino acid-binding periplasmic ABC transporter protein from Candidatus Liberibacter asiaticus in complex with Cysteine | | 分子名称: | 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ... | | 著者 | Kumar, P, Kesari, P, Ghosh, D.K, Kumar, P, Sharma, A.K. | | 登録日 | 2018-07-10 | | 公開日 | 2019-06-12 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.05 Å) | | 主引用文献 | Crystal structures of a putative periplasmic cystine-binding protein from Candidatus Liberibacter asiaticus: insights into an adapted mechanism of ligand binding.
Febs J., 286, 2019
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6AA1
 | | Crystal structure of putative amino acid binding periplasmic ABC transporter protein from Candidatus Liberibacter asiaticus bound with citrate | | 分子名称: | 1,2-ETHANEDIOL, CITRIC ACID, DI(HYDROXYETHYL)ETHER, ... | | 著者 | Kumar, P, Kesari, P, Ghosh, D.K, Kumar, P, Sharma, A.K. | | 登録日 | 2018-07-16 | | 公開日 | 2019-06-12 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.86 Å) | | 主引用文献 | Crystal structures of a putative periplasmic cystine-binding protein from Candidatus Liberibacter asiaticus: insights into an adapted mechanism of ligand binding.
Febs J., 286, 2019
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5WXU
 | | 11S globulin from Wrightia tinctoria reveals auxin binding site | | 分子名称: | 11S globulin, 1H-INDOL-3-YLACETIC ACID, CITRATE ANION, ... | | 著者 | Kumar, P, Kesari, P, Dhindwal, S, Kumar, P. | | 登録日 | 2017-01-09 | | 公開日 | 2018-05-23 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | A novel function for globulin in sequestering plant hormone: Crystal structure of Wrightia tinctoria 11S globulin in complex with auxin.
Sci Rep, 7, 2017
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6AAL
 | | Crystal Structure of putative amino acid binding periplasmic ABC transporter protein from Candidatus Liberibacter asiaticus in complex with Arginine | | 分子名称: | 1,2-ETHANEDIOL, ACETATE ION, ARGININE, ... | | 著者 | Kumar, P, Kesari, P, Ghosh, D.K, Kumar, P, Sharma, A.K. | | 登録日 | 2018-07-18 | | 公開日 | 2019-06-12 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | | 主引用文献 | Crystal structures of a putative periplasmic cystine-binding protein from Candidatus Liberibacter asiaticus: insights into an adapted mechanism of ligand binding.
Febs J., 286, 2019
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6IXI
 | | structure of Cd-bound periplasmic metal binding protein from candidatus liberibacter asiaticus | | 分子名称: | ACETATE ION, CADMIUM ION, GLYCEROL, ... | | 著者 | Kumar, P, Sharma, N, Dalal, V, Ghosh, D.K, Kumar, P, Sharma, A.K. | | 登録日 | 2018-12-10 | | 公開日 | 2020-01-15 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.07 Å) | | 主引用文献 | Characterization of the heavy metal binding properties of periplasmic metal uptake protein CLas-ZnuA2.
Metallomics, 12, 2020
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6O5U
 | | AAC-VIa bound to Kanamycin A | | 分子名称: | Aminoglycoside N(3)-acetyltransferase, KANAMYCIN A, MAGNESIUM ION | | 著者 | Kumar, P, Cuneo, M.J. | | 登録日 | 2019-03-04 | | 公開日 | 2019-09-25 | | 最終更新日 | 2023-10-11 | | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | | 主引用文献 | Low-Barrier and Canonical Hydrogen Bonds Modulate Activity and Specificity of a Catalytic Triad.
Angew.Chem.Int.Ed.Engl., 58, 2019
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8GYR
 | | Crystal structure of a variable region segment of Leptospira host-interacting outer surface protein, LigA | | 分子名称: | 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ... | | 著者 | Kumar, P, Akif, M. | | 登録日 | 2022-09-23 | | 公開日 | 2023-06-28 | | 最終更新日 | 2024-02-07 | | 実験手法 | X-RAY DIFFRACTION (1.87 Å) | | 主引用文献 | Crystal structure of a variable region segment of Leptospira host-interacting outer surface protein, LigA, reveals the orientation of Ig-like domains.
Int.J.Biol.Macromol., 244, 2023
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7QDJ
 | | Racemic structure of PK-10 and PK-11 | | 分子名称: | GLYCEROL, MALONATE ION, PK-10+PK-11, ... | | 著者 | Kumar, P, Paterson, N.G, Woolfson, D.N. | | 登録日 | 2021-11-27 | | 公開日 | 2022-04-27 | | 最終更新日 | 2022-07-27 | | 実験手法 | X-RAY DIFFRACTION (1.44 Å) | | 主引用文献 | De novo design of discrete, stable 3 10 -helix peptide assemblies.
Nature, 607, 2022
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7QDI
 | | Structure of octameric left-handed 310-helix bundle: D-310HD | | 分子名称: | 1,2-ETHANEDIOL, 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-(2-METHOXYETHOXY)ETHANOL, ... | | 著者 | Kumar, P, Paterson, N.G, Woolfson, D.N. | | 登録日 | 2021-11-27 | | 公開日 | 2022-04-27 | | 最終更新日 | 2022-07-27 | | 実験手法 | X-RAY DIFFRACTION (2.34 Å) | | 主引用文献 | De novo design of discrete, stable 3 10 -helix peptide assemblies.
Nature, 607, 2022
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7QDK
 | | A trimeric de novo coiled-coil assembly: CC-TypeN-LaLd | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CC-TypeN-LaLd, GLYCEROL, ... | | 著者 | Kumar, P, Paterson, N.G, Woolfson, D.N. | | 登録日 | 2021-11-27 | | 公開日 | 2022-04-27 | | 最終更新日 | 2022-07-27 | | 実験手法 | X-RAY DIFFRACTION (1.41 Å) | | 主引用文献 | De novo design of discrete, stable 3 10 -helix peptide assemblies.
Nature, 607, 2022
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6NP4
 | | AAC-VIa bound to Tobramycin | | 分子名称: | Aminoglycoside N(3)-acetyltransferase, MAGNESIUM ION, TOBRAMYCIN | | 著者 | Kumar, P, Cuneo, M.J. | | 登録日 | 2019-01-17 | | 公開日 | 2019-09-25 | | 最終更新日 | 2023-10-11 | | 実験手法 | X-RAY DIFFRACTION (1.151 Å) | | 主引用文献 | Low-Barrier and Canonical Hydrogen Bonds Modulate Activity and Specificity of a Catalytic Triad.
Angew.Chem.Int.Ed.Engl., 58, 2019
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6NP1
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6NP3
 | | AAC-VIa bound to Gentamicin | | 分子名称: | (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, Aminoglycoside N(3)-acetyltransferase, MAGNESIUM ION | | 著者 | Kumar, P, Cuneo, M.J. | | 登録日 | 2019-01-17 | | 公開日 | 2019-09-25 | | 最終更新日 | 2023-10-11 | | 実験手法 | X-RAY DIFFRACTION (1.15 Å) | | 主引用文献 | Low-Barrier and Canonical Hydrogen Bonds Modulate Activity and Specificity of a Catalytic Triad.
Angew.Chem.Int.Ed.Engl., 58, 2019
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6NP5
 | | AAC-VIa bound to Kanamycin B | | 分子名称: | (1R,2S,3S,4R,6S)-4,6-DIAMINO-3-[(3-AMINO-3-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]-2-HYDROXYCYCLOHEXYL 2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSIDE, Aminoglycoside N(3)-acetyltransferase, MAGNESIUM ION | | 著者 | Kumar, P, Cuneo, M.J. | | 登録日 | 2019-01-17 | | 公開日 | 2019-09-25 | | 最終更新日 | 2023-10-11 | | 実験手法 | X-RAY DIFFRACTION (1.353 Å) | | 主引用文献 | Low-Barrier and Canonical Hydrogen Bonds Modulate Activity and Specificity of a Catalytic Triad.
Angew.Chem.Int.Ed.Engl., 58, 2019
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6NP2
 | | AAC-VIa bound to Sisomicin | | 分子名称: | (1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside, Aminoglycoside N(3)-acetyltransferase, MAGNESIUM ION | | 著者 | Kumar, P, Cuneo, M.J. | | 登録日 | 2019-01-17 | | 公開日 | 2019-09-25 | | 最終更新日 | 2023-10-11 | | 実験手法 | X-RAY DIFFRACTION (1.2 Å) | | 主引用文献 | Low-Barrier and Canonical Hydrogen Bonds Modulate Activity and Specificity of a Catalytic Triad.
Angew.Chem.Int.Ed.Engl., 58, 2019
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3H3U
 | | Crystal structure of CRP (cAMP receptor Protein) from Mycobacterium tuberculosis | | 分子名称: | ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY CRP/FNR-FAMILY), SULFATE ION | | 著者 | Kumar, P, Joshi, D.C, Akif, M, Akhter, Y, Hasnain, S.E, Mande, S.C. | | 登録日 | 2009-04-17 | | 公開日 | 2010-02-02 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | | 主引用文献 | Mapping conformational transitions in cyclic AMP receptor protein: crystal structure and normal-mode analysis of Mycobacterium tuberculosis apo-cAMP receptor protein
Biophys.J., 98, 2010
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5E33
 | | Structure of human DPP3 in complex with met-enkephalin | | 分子名称: | Dipeptidyl peptidase 3, MAGNESIUM ION, Met-enkephalin, ... | | 著者 | Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K. | | 登録日 | 2015-10-01 | | 公開日 | 2016-04-13 | | 最終更新日 | 2024-01-10 | | 実験手法 | X-RAY DIFFRACTION (1.837 Å) | | 主引用文献 | Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
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5E3A
 | | Structure of human DPP3 in complex with opioid peptide leu-enkephalin | | 分子名称: | Dipeptidyl peptidase 3, Leu-enkephalin, MAGNESIUM ION, ... | | 著者 | Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K. | | 登録日 | 2015-10-02 | | 公開日 | 2016-04-13 | | 最終更新日 | 2024-01-10 | | 実験手法 | X-RAY DIFFRACTION (2.05 Å) | | 主引用文献 | Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
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5E3C
 | | Structure of human DPP3 in complex with hemorphin like opioid peptide IVYPW | | 分子名称: | Dipeptidyl peptidase 3, IVYPW, MAGNESIUM ION, ... | | 著者 | Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K. | | 登録日 | 2015-10-02 | | 公開日 | 2016-04-13 | | 最終更新日 | 2024-01-10 | | 実験手法 | X-RAY DIFFRACTION (2.765 Å) | | 主引用文献 | Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
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5EGY
 | | Structure of ligand free human DPP3 in closed form. | | 分子名称: | Dipeptidyl peptidase 3, MAGNESIUM ION, ZINC ION | | 著者 | Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K. | | 登録日 | 2015-10-27 | | 公開日 | 2016-04-13 | | 最終更新日 | 2024-01-10 | | 実験手法 | X-RAY DIFFRACTION (2.741 Å) | | 主引用文献 | Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
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5EHH
 | | Structure of human DPP3 in complex with endomorphin-2. | | 分子名称: | Dipeptidyl peptidase 3, Endomorphin-2, MAGNESIUM ION, ... | | 著者 | Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K. | | 登録日 | 2015-10-28 | | 公開日 | 2016-04-13 | | 最終更新日 | 2024-01-10 | | 実験手法 | X-RAY DIFFRACTION (2.38 Å) | | 主引用文献 | Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
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5E2Q
 | | Structure of human DPP3 in complex with angiotensin-II | | 分子名称: | Dipeptidyl peptidase 3, MAGNESIUM ION, POTASSIUM ION, ... | | 著者 | Kumar, P, Reisinger, M, Reithofer, V, Gruber, K. | | 登録日 | 2015-10-01 | | 公開日 | 2016-04-13 | | 最終更新日 | 2024-01-10 | | 実験手法 | X-RAY DIFFRACTION (2.404 Å) | | 主引用文献 | Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
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