Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7WGN
DownloadVisualize
BU of 7wgn by Molmil
X-ray structure of human PPAR delta ligand binding domain-pemafibrate co-crystals obtained by co-crystallization
分子名称: (2~{R})-2-[3-[[1,3-benzoxazol-2-yl-[3-(4-methoxyphenoxy)propyl]amino]methyl]phenoxy]butanoic acid, Peroxisome proliferator-activated receptor delta, octyl beta-D-glucopyranoside
著者Kamata, S, Honda, A, Akahane, M, Machida, Y, Uchii, K, Shiiyama, Y, Masuda, R, Oyama, T, Ishii, I.
登録日2021-12-28
公開日2022-05-25
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.813 Å)
主引用文献Functional and Structural Insights into Human PPAR alpha / delta / gamma Subtype Selectivity of Bezafibrate, Fenofibric Acid, and Pemafibrate.
Int J Mol Sci, 23, 2022
7WGL
DownloadVisualize
BU of 7wgl by Molmil
X-ray structure of human PPAR delta ligand binding domain-bezafibrate co-crystals obtained by co-crystallization
分子名称: 2-[P-[2-P-CHLOROBENZAMIDO)ETHYL]PHENOXY]-2-METHYLPROPIONIC ACID, Peroxisome proliferator-activated receptor delta, octyl beta-D-glucopyranoside
著者Kamata, S, Honda, A, Machida, Y, Uchii, K, Shiiyama, Y, Masuda, R, Oyama, T, Ishii, I.
登録日2021-12-28
公開日2022-05-25
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.091 Å)
主引用文献Functional and Structural Insights into Human PPAR alpha / delta / gamma Subtype Selectivity of Bezafibrate, Fenofibric Acid, and Pemafibrate.
Int J Mol Sci, 23, 2022
5GU5
DownloadVisualize
BU of 5gu5 by Molmil
Crystal structure of p24gamma2 GOLD domain determined by sulfur-SAD
分子名称: BROMIDE ION, Transmembrane emp24 domain-containing protein 5
著者Nagae, M, Yamaguchi, Y.
登録日2016-08-25
公開日2017-01-25
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystallographic analysis of murine p24 gamma 2 Golgi dynamics domain
Proteins, 85, 2017
3FDF
DownloadVisualize
BU of 3fdf by Molmil
Crystal structure of the serine phosphatase of RNA polymerase II CTD (SSU72 superfamily) from Drosophila melanogaster. Orthorhombic crystal form. Northeast Structural Genomics Consortium target FR253.
分子名称: FR253
著者Kuzin, A.P, Chen, Y, Seetharaman, J, Forouhar, F, Chinag, Y, Fang, Y, Cunningham, K, Ma, L.-C, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2008-11-25
公開日2009-01-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Orthorombic crystal structure of serine phosphatase of rna polymerase ii ctd from fly drosofila melanogaster. northeast structural genomics consortium target fr253.
To be Published
3FMV
DownloadVisualize
BU of 3fmv by Molmil
Crystal structure of the serine phosphatase of RNA polymerase II CTD (SSU72 superfamily) from Drosophila melanogaster. Monoclinic crystal form. Northeast Structural Genomics Consortium target FR253.
分子名称: Serine phosphatase of RNA polymerase II CTD
著者Kuzin, A.P, Chen, Y, Seetharaman, J, Forouhar, F, Chinag, Y, Fang, Y, Cunningham, K, Ma, L.-C, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2008-12-22
公開日2009-01-06
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (3.31 Å)
主引用文献Crystal structure of the serine phosphatase of RNA polymerase II CTD (SSU72 superfamily) from Drosophila melanogaster. Monoclinic crystal form. Northeast Structural Genomics Consortium target FR253.
To be Published
5WSF
DownloadVisualize
BU of 5wsf by Molmil
Crystal structure of a cupin protein (tm1459) in osmium (Os)-substituted form II
分子名称: OSMIUM ION, Uncharacterized protein tm1459
著者Fujieda, N, Nakano, T, Taniguchi, Y, Ichihashi, H, Nishikawa, Y, Kurisu, G, Itoh, S.
登録日2016-12-06
公開日2017-05-31
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.11 Å)
主引用文献A Well-Defined Osmium-Cupin Complex: Hyperstable Artificial Osmium Peroxygenase
J. Am. Chem. Soc., 2017
1WVW
DownloadVisualize
BU of 1wvw by Molmil
Crystal structures of kinase domain of DAP kinase in complex with small molecular inhibitors
分子名称: Death-associated protein kinase 1
著者Ueda, Y, Ogata, H, Yamakawa, A, Higuchi, Y.
登録日2004-12-27
公開日2006-04-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of kinase domain of DAP kinase
To be Published
1L7Y
DownloadVisualize
BU of 1l7y by Molmil
Solution NMR Structure of C. elegans Protein ZK652.3. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET WR41.
分子名称: HYPOTHETICAL PROTEIN ZK652.3
著者Cort, J.R, Chiang, Y, Zheng, D, Montelione, G.T, Kennedy, M.A, Northeast Structural Genomics Consortium (NESG)
登録日2002-03-18
公開日2002-08-14
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR structure of conserved eukaryotic protein ZK652.3 from C. elegans: a ubiquitin-like fold.
Proteins, 48, 2002
1WQ2
DownloadVisualize
BU of 1wq2 by Molmil
Neutron Crystal Structure Of Dissimilatory Sulfite Reductase D (DsrD)
分子名称: Protein dsvD, SULFATE ION
著者Chatake, T, Mizuno, N, Voordouw, G, Higuchi, Y, Arai, S, Tanaka, I, Niimura, N.
登録日2004-09-19
公開日2005-09-19
最終更新日2023-10-25
実験手法NEUTRON DIFFRACTION (2.4 Å)
主引用文献Crystallization and preliminary neutron analysis of the dissimilatory sulfite reductase D (DsrD) protein from the sulfate-reducing bacterium Desulfovibrio vulgaris.
Acta Crystallogr.,Sect.D, 59, 2003
1WLK
DownloadVisualize
BU of 1wlk by Molmil
L122E mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
分子名称: FLAVIN MONONUCLEOTIDE, FMN-binding protein
著者Shibata, N, Higuchi, Y.
登録日2004-06-28
公開日2005-07-19
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Determination of the role of the Carboxyl-terminal leucine-122 in FMN-binding protein by mutational and structural analysis.
J.Biochem., 141, 2007
1WZ1
DownloadVisualize
BU of 1wz1 by Molmil
Crystal structure of the Fv fragment complexed with dansyl-lysine
分子名称: Ig heavy chain, Ig light chain, N~6~-{[5-(DIMETHYLAMINO)-1-NAPHTHYL]SULFONYL}-L-LYSINE
著者Nakasako, M, Oka, T, Mashumo, M, Takahashi, H, Shimada, I, Yamaguchi, Y, Kato, K, Arata, Y.
登録日2005-02-21
公開日2006-01-31
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Conformational dynamics of complementarity-determining region H3 of an anti-dansyl Fv fragment in the presence of its hapten
J.Mol.Biol., 351, 2005
1WQV
DownloadVisualize
BU of 1wqv by Molmil
Human Factor Viia-Tissue Factor Complexed with propylsulfonamide-D-Thr-Met-p-aminobenzamidine
分子名称: CALCIUM ION, Coagulation factor VII, N-[DIHYDROXY(PROPYL)-LAMBDA~4~-SULFANYL]THREONYL-N~1~-{4-[AMINO(IMINO)METHYL]BENZYL}METHIONINAMIDE, ...
著者Kadono, S, Sakamoto, A, Kikuchi, Y, Oh-eda, M, Yabuta, N, Koga, T, Hattori, K, Shiraishi, T, Haramura, M, Kodama, H.
登録日2004-10-02
公開日2005-10-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of human factor VIIa/tissue factor in complex with peptide mimetic inhibitor
Biochem.Biophys.Res.Commun., 324, 2004
1WY5
DownloadVisualize
BU of 1wy5 by Molmil
Crystal structure of isoluecyl-tRNA lysidine synthetase
分子名称: Hypothetical UPF0072 protein AQ_1887
著者Nakanishi, K, Fukai, S, Ikeuchi, Y, Soma, A, Sekine, Y, Suzuki, T, Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-02-06
公開日2005-05-03
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献Structural basis for lysidine formation by ATP pyrophosphatase accompanied by a lysine-specific loop and a tRNA-recognition domain.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1WYB
DownloadVisualize
BU of 1wyb by Molmil
Structure of 6-aminohexanoate-dimer hydrolase
分子名称: 6-aminohexanoate-dimer hydrolase
著者Negoro, S, Ohki, T, Shibata, N, Mizuno, N, Wakitani, Y, Tsurukame, J, Matsumoto, K, Kawamoto, I, Takeo, M, Higuchi, Y.
登録日2005-02-09
公開日2005-09-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of 6-aminohexanoate-dimer hydrolase
To be Published
5WSD
DownloadVisualize
BU of 5wsd by Molmil
Crystal structure of a cupin protein (tm1459) in apo form
分子名称: Uncharacterized protein tm1459
著者Fujieda, N, Nakano, T, Taniguchi, Y, Ichihashi, H, Nishikawa, Y, Kurisu, G, Itoh, S.
登録日2016-12-06
公開日2017-05-31
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献A Well-Defined Osmium-Cupin Complex: Hyperstable Artificial Osmium Peroxygenase
J. Am. Chem. Soc., 2017
1WR6
DownloadVisualize
BU of 1wr6 by Molmil
Crystal structure of GGA3 GAT domain in complex with ubiquitin
分子名称: ADP-ribosylation factor binding protein GGA3, ubiquitin
著者Kawasaki, M, Shiba, T, Shiba, Y, Yamaguchi, Y, Matsugaki, N, Igarashi, N, Suzuki, M, Kato, R, Kato, K, Nakayama, K, Wakatsuki, S.
登録日2004-10-12
公開日2005-06-28
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Molecular mechanism of ubiquitin recognition by GGA3 GAT domain.
Genes Cells, 10, 2005
5WSE
DownloadVisualize
BU of 5wse by Molmil
Crystal structure of a cupin protein (tm1459) in osmium (Os) substituted form I
分子名称: OSMIUM ION, Uncharacterized protein tm1459
著者Fujieda, N, Nakano, T, Taniguchi, Y, Ichihashi, H, Nishikawa, Y, Kurisu, G, Itoh, S.
登録日2016-12-06
公開日2017-05-31
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献A Well-Defined Osmium-Cupin Complex: Hyperstable Artificial Osmium Peroxygenase
J. Am. Chem. Soc., 2017
1NI7
DownloadVisualize
BU of 1ni7 by Molmil
NORTHEAST STRUCTURAL GENOMIC CONSORTIUM TARGET ER75
分子名称: Hypothetical protein ygdK
著者Liu, G, Chiang, Y, Acton, T, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
登録日2002-12-21
公開日2003-06-03
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献High-quality homology models derived from NMR and X-ray structures of E. coli proteins YgdK and Suf E suggest that all members of the YgdK/Suf E protein family are enhancers of cysteine desulfurases.
Protein Sci., 14, 2005
1WVX
DownloadVisualize
BU of 1wvx by Molmil
Crystal structures of kinase domain of DAP kinase in complex with small molecular inhibitors
分子名称: 6-(3-AMINOPROPYL)-4,9-DIMETHYLPYRROLO[3,4-C]CARBAZOLE-1,3(2H,6H)-DIONE, Death-associated protein kinase 1
著者Ueda, Y, Ogata, H, Yamakawa, A, Higuchi, Y.
登録日2004-12-27
公開日2006-04-11
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Complex structure of kinase domain of DAP kinase with BDB402
To be Published
1WN1
DownloadVisualize
BU of 1wn1 by Molmil
Crystal Structure of Dipeptiase from Pyrococcus Horikoshii OT3
分子名称: COBALT (II) ION, dipeptidase
著者Jeyakanthan, J, Taka, J, Kitaguchi, Y, Shiro, Y, Yokoyama, S, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-07-26
公開日2005-08-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal Structure of Dipeptiase from Pyrococcus Horikoshii OT3
To be Published
1WVY
DownloadVisualize
BU of 1wvy by Molmil
Crystal structures of kinase domain of DAP kinase in complex with small molecular inhibitors
分子名称: Death-associated protein kinase 1, STAUROSPORINE
著者Ueda, Y, Ogata, H, Yamakawa, A, Higuchi, Y.
登録日2004-12-27
公開日2006-04-11
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Complex structure of kinase domain of DAP kinase with Staurosporine
To be Published
1WLI
DownloadVisualize
BU of 1wli by Molmil
L122Y mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
分子名称: FLAVIN MONONUCLEOTIDE, FMN-binding protein
著者Shibata, N, Higuchi, Y.
登録日2004-06-28
公開日2005-07-19
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Determination of the role of the Carboxyl-terminal leucine-122 in FMN-binding protein by mutational and structural analysis.
J.Biochem., 141, 2007
1WRD
DownloadVisualize
BU of 1wrd by Molmil
Crystal structure of Tom1 GAT domain in complex with ubiquitin
分子名称: Target of Myb protein 1, Ubiquitin
著者Akutsu, M, Kawasaki, M, Katoh, Y, Shiba, T, Yamaguchi, Y, Kato, R, Kato, K, Nakayama, K, Wakatsuki, S.
登録日2004-10-14
公開日2005-10-11
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural basis for recognition of ubiquitinated cargo by Tom1-GAT domain.
Febs Lett., 579, 2005
3KLJ
DownloadVisualize
BU of 3klj by Molmil
Crystal structure of NADH:rubredoxin oxidoreductase from Clostridium acetobutylicum
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, NAD(FAD)-dependent dehydrogenase, NirB-family (N-terminal domain)
著者Nishikawa, K, Shomura, Y, Kawasaki, S, Niimura, Y, Higuchi, Y.
登録日2009-11-08
公開日2010-02-16
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of NADH:rubredoxin oxidoreductase from Clostridium acetobutylicum: a key component of the dioxygen scavenging system in obligatory anaerobes.
Proteins, 78, 2010
1NY1
DownloadVisualize
BU of 1ny1 by Molmil
CRYSTAL STRUCTURE OF B. SUBTILIS POLYSACCHARIDE DEACETYLASE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR127.
分子名称: Probable polysaccharide deacetylase pdaA
著者Forouhar, F, Edstrom, W, Khan, J, Ma, L, Chiang, Y, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2003-02-11
公開日2003-03-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of Polysaccharide Deacetylase (PDAA_BACSU) from B. Subtilis (Pdaa_Bacsu) Northeast Structural Genomics Research Consortium (Nesg) Target Sr127
To be Published

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon