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8ISK
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BU of 8isk by Molmil
Pr conformer of Zea mays phytochrome A1 - ZmphyA1-Pr
分子名称: 3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, Phytochrome
著者Zhang, Y, Ma, C, Zhao, J, Gao, N, Wang, J.
登録日2023-03-20
公開日2023-08-09
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural insights into plant phytochrome A as a highly sensitized photoreceptor.
Cell Res., 33, 2023
8ISJ
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BU of 8isj by Molmil
Pr conformer of Arabidopsis thaliana phytochrome A - AtphyA-Pr
分子名称: 3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, Phytochrome A
著者Zhang, Y, Ma, C, Zhao, J, Gao, N, Wang, J.
登録日2023-03-20
公開日2023-08-09
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural insights into plant phytochrome A as a highly sensitized photoreceptor.
Cell Res., 33, 2023
8IHM
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BU of 8ihm by Molmil
Eaf3 CHD domain bound to the nucleosome
分子名称: Chromatin modification-related protein EAF3, DNA (164-MER), DNA (165-MER), ...
著者Zhang, Y, Gang, C.
登録日2023-02-23
公開日2024-03-20
実験手法ELECTRON MICROSCOPY (3.58 Å)
主引用文献Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme.
Cell Res., 33, 2023
8IHN
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BU of 8ihn by Molmil
Cryo-EM structure of the Rpd3S core complex
分子名称: CALCIUM ION, Chromatin modification-related protein EAF3, Histone H3, ...
著者Zhang, Y, Gang, C.
登録日2023-02-23
公開日2024-03-20
実験手法ELECTRON MICROSCOPY (3.37 Å)
主引用文献Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme.
Cell Res., 33, 2023
8IHT
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BU of 8iht by Molmil
Rpd3S bound to the nucleosome
分子名称: CALCIUM ION, Chromatin modification-related protein EAF3, DNA (164-MER), ...
著者Zhang, Y, Gang, C.
登録日2023-02-23
公開日2024-03-20
実験手法ELECTRON MICROSCOPY (3.72 Å)
主引用文献Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme.
Cell Res., 33, 2023
7ESD
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BU of 7esd by Molmil
Mature Donggang virus
分子名称: Genome polyprotein
著者Zhang, Y, Liang, D.
登録日2021-05-10
公開日2022-05-18
最終更新日2022-06-29
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Replication is the key barrier during the dual-host adaptation of mosquito-borne flaviviruses.
Proc.Natl.Acad.Sci.USA, 119, 2022
6A37
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BU of 6a37 by Molmil
X-ray structure of cyclohexanone monooxygenase from Acinetobacter calcoaceticus
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Putative flavin-binding monooxygenase
著者Zhang, Y, Yu, H.L, Xu, J.H.
登録日2018-06-15
公開日2019-03-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.204 Å)
主引用文献Engineering of Cyclohexanone Monooxygenase for the Enantioselective Synthesis of (S)-Omeprazole
Acs Sustain Chem Eng
7DDY
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BU of 7ddy by Molmil
Crystal structure of an acetyl xylan esterase AlAXEase
分子名称: G-D-S-L family lipolytic protein
著者Zhang, Y, Li, P.Y, Zhang, Y.Z.
登録日2020-10-30
公開日2021-06-02
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.505 Å)
主引用文献Active site architecture of an acetyl xylan esterase indicates a novel cold adaptation strategy.
J.Biol.Chem., 297, 2021
7EN7
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BU of 7en7 by Molmil
The crystal structure of Escherichia coli MurR in complex with N-acetylmuramic-acid-6-phosphate
分子名称: (2R)-2-[(2R,3R,4R,5S,6R)-3-acetamido-2,5-bis(oxidanyl)-6-(phosphonooxymethyl)oxan-4-yl]oxypropanoic acid, HTH-type transcriptional regulator MurR
著者Zhang, Y, Chen, W, Ji, Q.
登録日2021-04-16
公開日2022-04-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献Molecular basis for cell-wall recycling regulation by transcriptional repressor MurR in Escherichia coli.
Nucleic Acids Res., 50, 2022
7EN5
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BU of 7en5 by Molmil
The crystal structure of Escherichia coli MurR in complex with N-acetylglucosamine-6-phosphate
分子名称: 2-METHOXYETHANOL, 2-acetamido-2-deoxy-6-O-phosphono-beta-D-glucopyranose, GLYCEROL, ...
著者Zhang, Y, Chen, W, Ji, Q.
登録日2021-04-16
公開日2022-04-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Molecular basis for cell-wall recycling regulation by transcriptional repressor MurR in Escherichia coli.
Nucleic Acids Res., 50, 2022
7EN6
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BU of 7en6 by Molmil
The crystal structure of Escherichia coli MurR in apo form
分子名称: HTH-type transcriptional regulator MurR, PHOSPHATE ION
著者Zhang, Y, Chen, W, Ji, Q.
登録日2021-04-16
公開日2022-04-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.276 Å)
主引用文献Molecular basis for cell-wall recycling regulation by transcriptional repressor MurR in Escherichia coli.
Nucleic Acids Res., 50, 2022
7DTJ
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BU of 7dtj by Molmil
Crystal structure of the RecA2 domain of RNA helicase CGH-1 in C. elegans
分子名称: ATP-dependent RNA helicase cgh-1
著者Zhang, Y, Lv, M.Q, Hong, J.J.
登録日2021-01-05
公開日2021-03-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.402 Å)
主引用文献Structural and biochemical insights into the recognition of RNA helicase CGH-1 by CAR-1 in C. elegans.
Biochem.Biophys.Res.Commun., 549, 2021
6I5X
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BU of 6i5x by Molmil
Crystal structure of Aspergillus fumigatus phosphomannomutase
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
著者Zhang, Y, Raimi, O.G, Ferenbach, A.T, van Aalten, D.M.F.
登録日2018-11-15
公開日2019-11-27
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of Aspergillus fumigatus phosphomannomutase
To Be Published
7W7W
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BU of 7w7w by Molmil
E2 Pi of SERCA2b
分子名称: MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2, TETRAFLUOROALUMINATE ION
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7W7T
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BU of 7w7t by Molmil
The E1-BeF3- 2Ca2+ of SERCA2b
分子名称: BERYLLIUM TRIFLUORIDE ION, CALCIUM ION, MAGNESIUM ION, ...
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7W7U
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BU of 7w7u by Molmil
The 'Ca2+-unbound' BeF3- of SERCA2b
分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7W7V
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BU of 7w7v by Molmil
'late' E2P of SERCA2b
分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7E1T
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BU of 7e1t by Molmil
Crystal structure of Rab9A-GTP-Nde1
分子名称: GUANOSINE-5'-TRIPHOSPHATE, Isoform 2 of Nuclear distribution protein nudE homolog 1, MAGNESIUM ION, ...
著者Zhang, Y, Zhang, T, Ding, J.
登録日2021-02-03
公開日2021-10-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Nde1 is a Rab9 effector for loading late endosomes to cytoplasmic dynein motor complex.
Structure, 30, 2022
7EU7
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BU of 7eu7 by Molmil
Structure of the human GluN1-GluN2A NMDA receptor in complex with S-ketamine, glycine and glutamate
分子名称: (2~{S})-2-(2-chlorophenyl)-2-(methylamino)cyclohexan-1-one, 2-acetamido-2-deoxy-beta-D-glucopyranose, GLUTAMIC ACID, ...
著者Zhang, Y, Zhang, T, Zhu, S.
登録日2021-05-16
公開日2021-08-04
最終更新日2022-10-26
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural basis of ketamine action on human NMDA receptors.
Nature, 596, 2021
7F3I
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BU of 7f3i by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P212121
分子名称: RNA (5'-R(*GP*UP*(5MC)P*CP*(5MC))-3'), Y-box-binding protein 2
著者Zhang, Y, Huang, Y.
登録日2021-06-16
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P212121
To Be Published
7F3K
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BU of 7f3k by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
分子名称: RNA (5'-R(*UP*CP*AP*UP*(5MC)P*U)-3'), SULFATE ION, Y-box-binding protein 2
著者Zhang, Y, Huang, Y.
登録日2021-06-16
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
To Be Published
7F3L
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BU of 7f3l by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62
分子名称: RNA (5'-R(P*CP*AP*UP*(5MC))-3'), Y-box-binding protein 2
著者Zhang, Y, Huang, Y.
登録日2021-06-16
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62
To Be Published
7F3J
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BU of 7f3j by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1
分子名称: RNA (5'-R(*UP*CP*AP*UP*(5MC))-3'), Y-box-binding protein 2
著者Zhang, Y, Huang, Y.
登録日2021-06-16
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1
To Be Published
7WHP
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BU of 7whp by Molmil
Pentameric turret of Bombyx mori cytoplasmic polyhedrosis virus after spike detaches.
分子名称: ADENOSINE-5'-TRIPHOSPHATE, S-ADENOSYLMETHIONINE, Structural protein VP3
著者Zhang, Y, Cui, Y, Sun, J, Zhou, Z.H.
登録日2021-12-31
公開日2022-02-02
最終更新日2022-02-16
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Multiple conformations of trimeric spikes visualized on a non-enveloped virus.
Nat Commun, 13, 2022
7WHM
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Closed spike of Bombyx mori cytoplasmic polyhedrosis virus
分子名称: PPPDE domain-containing protein
著者Zhang, Y, Cui, Y, Sun, J, Zhou, Z.H.
登録日2021-12-31
公開日2022-02-02
最終更新日2022-02-16
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Multiple conformations of trimeric spikes visualized on a non-enveloped virus.
Nat Commun, 13, 2022

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