Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3BM2
DownloadVisualize
BU of 3bm2 by Molmil
Crystal structure of a minimal nitroreductase ydjA from Escherichia coli K12 with and without FMN cofactor
分子名称: Protein ydjA
著者Choi, J.W, Kim, J.S.
登録日2007-12-12
公開日2008-01-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of a minimal nitroreductase, ydjA, from Escherichia coli K12 with and without FMN cofactor
J.Mol.Biol., 377, 2008
3F84
DownloadVisualize
BU of 3f84 by Molmil
Structure of fusion complex of major pilin CfaB and major pilin CfaB of CFA/I pilus from ETEC E. coli
分子名称: CFA/I fimbrial subunit B
著者Xia, D, Li, Y.F.
登録日2008-11-11
公開日2009-08-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structure of CFA/I fimbriae from enterotoxigenic Escherichia coli.
Proc.Natl.Acad.Sci.USA, 106, 2009
6T9C
DownloadVisualize
BU of 6t9c by Molmil
Crystal structure of the complex between PPARgamma LBD and the ligand NV1346 (3a)
分子名称: 4-hexoxy-~{N}-[(2~{S})-3-methyl-1-(oxidanylamino)-1-oxidanylidene-butan-2-yl]benzamide, Peroxisome proliferator-activated receptor gamma
著者Pochetti, G, Montanari, R, Capelli, D.
登録日2019-10-27
公開日2020-02-26
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Insights into PPAR gamma Phosphorylation and Its Inhibition Mechanism.
J.Med.Chem., 63, 2020
7PFP
DownloadVisualize
BU of 7pfp by Molmil
Full-length cryo-EM structure of the native human uromodulin (UMOD)/Tamm-Horsfall protein (THP) filament
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Uromodulin, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Jovine, L, Xu, C, Stsiapanava, A, Carroni, M, Tunyasuvunakool, K, Jumper, J, Wu, B.
登録日2021-08-11
公開日2022-03-16
最終更新日2022-03-30
実験手法ELECTRON MICROSCOPY (6.1 Å)
主引用文献Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH.
Nat.Struct.Mol.Biol., 29, 2022
8IF4
DownloadVisualize
BU of 8if4 by Molmil
Structure of human alpha-2/delta-1 without mirogabalin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Voltage-dependent calcium channel subunit alpha-2/delta-1
著者Kozai, D, Numoto, N, Fujiyoshi, Y.
登録日2023-02-17
公開日2023-04-05
最終更新日2023-04-12
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Recognition Mechanism of a Novel Gabapentinoid Drug, Mirogabalin, for Recombinant Human alpha 2 delta 1, a Voltage-Gated Calcium Channel Subunit.
J.Mol.Biol., 435, 2023
8IF3
DownloadVisualize
BU of 8if3 by Molmil
Structure of human alpha-2/delta-1 with mirogabalin
分子名称: 2-[(1R,5S,6S)-6-(aminomethyl)-3-ethyl-6-bicyclo[3.2.0]hept-3-enyl]acetic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Kozai, D, Numoto, N, Fujiyoshi, Y.
登録日2023-02-17
公開日2023-04-05
最終更新日2023-04-12
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Recognition Mechanism of a Novel Gabapentinoid Drug, Mirogabalin, for Recombinant Human alpha 2 delta 1, a Voltage-Gated Calcium Channel Subunit.
J.Mol.Biol., 435, 2023
3NK4
DownloadVisualize
BU of 3nk4 by Molmil
Crystal structure of full-length sperm receptor ZP3 at 2.0 A resolution
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, CITRATE ANION, Zona pellucida 3
著者Monne, M, Jovine, L.
登録日2010-06-18
公開日2010-11-10
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Insights into Egg Coat Assembly and Egg-Sperm Interaction from the X-Ray Structure of Full-Length ZP3.
Cell(Cambridge,Mass.), 143, 2010
4WRN
DownloadVisualize
BU of 4wrn by Molmil
Crystal structure of the polymerization region of human uromodulin/Tamm-Horsfall protein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Maltose-binding periplasmic protein,Uromodulin, ZINC ION, ...
著者Bokhove, M, De Sanctis, D, Jovine, L.
登録日2014-10-24
公開日2016-01-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献A structured interdomain linker directs self-polymerization of human uromodulin.
Proc.Natl.Acad.Sci.USA, 113, 2016
1RKR
DownloadVisualize
BU of 1rkr by Molmil
CRYSTAL STRUCTURE OF AZURIN-I FROM ALCALIGENES XYLOSOXIDANS NCIMB 11015
分子名称: AZURIN-I, COPPER (II) ION
著者Li, C, Inoue, T, Gotowda, M, Suzuki, S, Yamaguchi, K, Kataoka, K, Kai, Y.
登録日1997-05-17
公開日1998-05-20
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structure of azurin I from the denitrifying bacterium Alcaligenes xylosoxidans NCIMB 11015 at 2.45 A resolution.
Acta Crystallogr.,Sect.D, 54, 1998
1RRP
DownloadVisualize
BU of 1rrp by Molmil
STRUCTURE OF THE RAN-GPPNHP-RANBD1 COMPLEX
分子名称: MAGNESIUM ION, NUCLEAR PORE COMPLEX PROTEIN NUP358, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
著者Vetter, I.R, Nowak, C, Nishimoto, T, Kuhlmann, J, Wittinghofer, A.
登録日1999-01-15
公開日1999-05-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.96 Å)
主引用文献Structure of a Ran-binding domain complexed with Ran bound to a GTP analogue: implications for nuclear transport.
Nature, 398, 1999
8XW9
DownloadVisualize
BU of 8xw9 by Molmil
Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate and fructose 1,6-bisphosphate and UDP
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, MAGNESIUM ION, OXALATE ION, ...
著者Nakashima, R, Taguchi, A.
登録日2024-01-16
公開日2024-07-31
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural Basis of Nucleotide Selectivity in Pyruvate Kinase.
J.Mol.Biol., 436, 2024
8XW8
DownloadVisualize
BU of 8xw8 by Molmil
Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate and fructose 1,6-bisphosphate and GDP
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, GLYCEROL, GUANOSINE-5'-DIPHOSPHATE, ...
著者Nakashima, R, Taguchi, A.
登録日2024-01-16
公開日2024-07-31
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Basis of Nucleotide Selectivity in Pyruvate Kinase.
J.Mol.Biol., 436, 2024
8XW7
DownloadVisualize
BU of 8xw7 by Molmil
Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate and fructose 1,6-bisphosphate and ADP
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, ...
著者Nakashima, R, Taguchi, A.
登録日2024-01-16
公開日2024-07-31
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Basis of Nucleotide Selectivity in Pyruvate Kinase.
J.Mol.Biol., 436, 2024
8XW6
DownloadVisualize
BU of 8xw6 by Molmil
Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate and fructose 1,6-bisphosphate and ATP
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Nakashima, R, Taguchi, A.
登録日2024-01-16
公開日2024-07-31
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Structural Basis of Nucleotide Selectivity in Pyruvate Kinase.
J.Mol.Biol., 436, 2024
8RKH
DownloadVisualize
BU of 8rkh by Molmil
Crystal structure of the ZP-N2 and ZP-N3 domains of mouse ZP2 (mZP2-N2N3)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Zona pellucida sperm-binding protein 2, ...
著者Fahrenkamp, D, de Sanctis, D, Jovine, L.
登録日2023-12-25
公開日2024-03-13
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献ZP2 cleavage blocks polyspermy by modulating the architecture of the egg coat.
Cell, 187, 2024
8RKF
DownloadVisualize
BU of 8rkf by Molmil
Crystal structure of the ZP-N1 and ZP-N2 domains of human ZP2 (hZP2-N1N2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Zona pellucida sperm-binding protein 2
著者Dioguardi, E, Stsiapanava, A, de Sanctis, D, Jovine, L.
登録日2023-12-25
公開日2024-03-13
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献ZP2 cleavage blocks polyspermy by modulating the architecture of the egg coat.
Cell, 187, 2024
8RKE
DownloadVisualize
BU of 8rke by Molmil
Crystal structure of the complete N-terminal region of human ZP2 (hZP2-N1N2N3)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Zona pellucida sperm-binding protein 2, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Fahrenkamp, D, de Sanctis, D, Jovine, L.
登録日2023-12-25
公開日2024-03-13
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献ZP2 cleavage blocks polyspermy by modulating the architecture of the egg coat.
Cell, 187, 2024
8ZLY
DownloadVisualize
BU of 8zly by Molmil
Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate and fructose 1,6-bisphosphate and UDP
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, MAGNESIUM ION, OXALATE ION, ...
著者Nakashima, R, Taguchi, A.
登録日2024-05-21
公開日2024-07-31
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Structural Basis of Nucleotide Selectivity in Pyruvate Kinase.
J.Mol.Biol., 436, 2024
9BF1
DownloadVisualize
BU of 9bf1 by Molmil
Structure of apo-state V. cholerae DdmD
分子名称: Helicase/UvrB N-terminal domain-containing protein
著者Shen, Z.F, Yang, X.Y, Fu, T.M.
登録日2024-04-16
公開日2024-08-21
最終更新日2024-09-04
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献DdmDE eliminates plasmid invasion by DNA-guided DNA targeting.
Cell, 2024
9C6Q
DownloadVisualize
BU of 9c6q by Molmil
Structure of V. cholerae monomeric DdmD bound with ssDNA
分子名称: Helicase/UvrB N-terminal domain-containing protein, ssDNA
著者Shen, Z.F, Yang, X.Y, Fu, T.M.
登録日2024-06-08
公開日2024-08-21
最終更新日2024-09-04
実験手法ELECTRON MICROSCOPY (3.18 Å)
主引用文献DdmDE eliminates plasmid invasion by DNA-guided DNA targeting.
Cell, 2024
9BF5
DownloadVisualize
BU of 9bf5 by Molmil
Structure of V. cholerae DdmD in complex with ssDNA
分子名称: Helicase/UvrB N-terminal domain-containing protein, ssDNA1, ssDNA2
著者Shen, Z.F, Yang, X.Y, Fu, T.M.
登録日2024-04-16
公開日2024-09-04
実験手法ELECTRON MICROSCOPY (3.07 Å)
主引用文献DdmDE eliminates plasmid invasion by DNA-guided DNA targeting.
Cell, 2024
8IAX
DownloadVisualize
BU of 8iax by Molmil
Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with phosphoenolpyruvate and fructose 1,6-bisphosphate
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, MAGNESIUM ION, PHOSPHOENOLPYRUVATE, ...
著者Nakashima, R, Taguchi, A.
登録日2023-02-09
公開日2023-06-14
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance.
J.Biol.Chem., 299, 2023
8IAT
DownloadVisualize
BU of 8iat by Molmil
Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate
分子名称: GLYCEROL, MAGNESIUM ION, OXALATE ION, ...
著者Nakashima, R, Taguchi, A.
登録日2023-02-09
公開日2023-06-14
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance.
J.Biol.Chem., 299, 2023
8IAS
DownloadVisualize
BU of 8ias by Molmil
Crystal structure of Streptococcus pneumoniae pyruvate kinase
分子名称: CITRIC ACID, GLYCEROL, Pyruvate kinase
著者Nakashima, R, Taguchi, A.
登録日2023-02-09
公開日2023-06-14
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance.
J.Biol.Chem., 299, 2023
8IAW
DownloadVisualize
BU of 8iaw by Molmil
Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with phosphoenolpyruvate
分子名称: MAGNESIUM ION, PHOSPHOENOLPYRUVATE, Pyruvate kinase, ...
著者Nakashima, R, Taguchi, A.
登録日2023-02-09
公開日2023-06-14
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance.
J.Biol.Chem., 299, 2023

224931

件を2024-09-11に公開中

PDB statisticsPDBj update infoContact PDBjnumon