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6EQ1
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BU of 6eq1 by Molmil
Structure of the periplasmic binding protein (PBP) MelB (Atu4661) in complex with stachyose from agrobacterium fabrum C58
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Vigouroux, A, Morera, S.
登録日2017-10-12
公開日2018-04-11
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
J. Biol. Chem., 293, 2018
6EPY
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BU of 6epy by Molmil
Structure of the PBP MelB (Atu4661) in complex with raffinose from A.fabrum C58
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Periplasmic alpha-galactoside-binding protein, ...
著者Morera, S, Vigouroux, A.
登録日2017-10-12
公開日2018-04-11
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
J. Biol. Chem., 293, 2018
6FI9
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BU of 6fi9 by Molmil
Crystal Structure of a zinc-responsive MarR family member, Lactococcus lactis ZitR
分子名称: Transcriptional regulator ZitR, ZINC ION
著者Varela, P.F, Legrand, P.
登録日2018-01-17
公開日2019-02-20
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Biophysical and structural characterization of a zinc-responsive repressor of the MarR superfamily.
PLoS ONE, 14, 2019
3SW8
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BU of 3sw8 by Molmil
Strep Peptide Deformylase with a time dependent dichlorobenzamide-reverse hydroxamic acid
分子名称: 2,3-dichloro-N-{2-[formyl(hydroxy)amino]ethyl}benzamide, NICKEL (II) ION, Peptide deformylase 3, ...
著者Campobasso, N, Smith, K.J.
登録日2011-07-13
公開日2011-07-27
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.702 Å)
主引用文献Understanding the origins of time-dependent inhibition by polypeptide deformylase inhibitors.
Biochemistry, 50, 2011
5OTA
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BU of 5ota by Molmil
Structure of the periplasmic binding protein (PBP) NocT from Agrobacterium tumefaciens C58 in complex with octopinic acid
分子名称: (2~{S})-5-azanyl-2-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]pentanoic acid, 1,2-ETHANEDIOL, Nopaline-binding periplasmic protein
著者Vigouroux, A, Morera, S.
登録日2017-08-21
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
4P0I
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BU of 4p0i by Molmil
Structure of the PBP NocT
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Nopaline-binding periplasmic protein
著者Vigouroux, A, Morera, S.
登録日2014-02-21
公開日2014-10-22
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
4POW
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BU of 4pow by Molmil
Structure of the PBP NocT in complex with pyronopaline
分子名称: 1,2-ETHANEDIOL, 1-[(1S)-4-carbamimidamido-1-carboxybutyl]-5-oxo-D-proline, Nopaline-binding periplasmic protein
著者Morera, S, Vigouroux, A.
登録日2014-02-26
公開日2014-10-22
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
5ORG
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BU of 5org by Molmil
Structure of the periplasmic binding protein (PBP) OccJ from A. tumefaciens B6 in complex with octopine.
分子名称: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
著者Vigouroux, A, Morera, S.
登録日2017-08-16
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
4PP0
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BU of 4pp0 by Molmil
Structure of the PBP NocT-M117N in complex with pyronopaline
分子名称: 1,2-ETHANEDIOL, 1-[(1S)-4-carbamimidamido-1-carboxybutyl]-5-oxo-D-proline, DI(HYDROXYETHYL)ETHER, ...
著者Morera, S, Vigouroux, A.
登録日2014-02-26
公開日2014-10-22
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
5OT8
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BU of 5ot8 by Molmil
Structure of the periplasmic binding protein (PBP) NocT-G97S mutant from A. tumefaciens C58 in complex with octopine.
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Vigouroux, A, Morera, S.
登録日2017-08-21
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5ORE
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BU of 5ore by Molmil
Structure of the periplasmic binding protein (PBP) OccJ from agrobacterium tumefaciens B6
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Octopine-binding periplasmic protein
著者Vigouroux, A, Morera, S.
登録日2017-08-16
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OTC
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BU of 5otc by Molmil
Structure of the periplasmic binding protein (PBP) NocT from Agrobacterium tumefaciens C58 in complex with noroctopinic acid.
分子名称: (2~{S})-5-azanyl-2-(2-hydroxy-2-oxoethylamino)pentanoic acid, 1,2-ETHANEDIOL, CHLORIDE ION, ...
著者Vigouroux, A, Morera, S.
登録日2017-08-21
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OVZ
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BU of 5ovz by Molmil
High resolution structure of the PBP NocT in complex with nopaline
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, N-[(1S)-4-carbamimidamido-1-carboxybutyl]-D-glutamic acid, ...
著者Vigouroux, A, Morera, S.
登録日2017-08-30
公開日2018-10-10
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
5OT9
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BU of 5ot9 by Molmil
Structure of the periplasmic binding protein (PBP) NocT from A.tumefaciens C58 in complex with histopine.
分子名称: 1,2-ETHANEDIOL, Histopine, Nopaline-binding periplasmic protein
著者Vigouroux, A, Morera, S.
登録日2017-08-21
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
4QCI
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BU of 4qci by Molmil
PDGF-B blocking antibody bound to PDGF-BB
分子名称: Platelet-derived growth factor subunit B, anti-PDGF-BB antibody - Light Chain, anti-PDGF-BB antibody - Heavy chain
著者Kuai, J, Mosyak, L, Tam, M, LaVallie, E, Pullen, N, Carven, G.
登録日2014-05-12
公開日2015-03-11
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Characterization of Binding Mode of Action of a Blocking Anti-Platelet-Derived Growth Factor (PDGF)-B Monoclonal Antibody, MOR8457, Reveals Conformational Flexibility and Avidity Needed for PDGF-BB To Bind PDGF Receptor-beta.
Biochemistry, 54, 2015
6HU8
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BU of 6hu8 by Molmil
Apo form of the competence regulator ComR from Streptococcus vestibularis
分子名称: Transcriptional regulator ComR
著者Nessler, S, Thuillier, J, Ledesma, L, Hols, P.
登録日2018-10-05
公開日2019-10-23
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.894 Å)
主引用文献Molecular dissection of pheromone selectivity in the competence signaling system ComRS of streptococci.
Proc.Natl.Acad.Sci.USA, 117, 2020
6HLY
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BU of 6hly by Molmil
Structure in P212121 form of the PBP AgtB in complex with agropinic acid from A.tumefacien R10
分子名称: 1,2-ETHANEDIOL, Agropine permease, agropinic acid
著者Morera, S, Marty, L, Vigouroux, A.
登録日2018-09-11
公開日2018-12-26
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural basis for two efficient modes of agropinic acid opine import into the bacterial pathogenAgrobacterium tumefaciens.
Biochem. J., 476, 2019
6HLZ
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BU of 6hlz by Molmil
Structure in C2 form of the PBP AgtB from A.tumefacien R10 in complex with agropinic acid
分子名称: 1,2-ETHANEDIOL, 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, Agropine permease, ...
著者Morera, S, Marty, L, Vigouroux, A.
登録日2018-09-11
公開日2018-12-26
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Structural basis for two efficient modes of agropinic acid opine import into the bacterial pathogenAgrobacterium tumefaciens.
Biochem. J., 476, 2019
6HM2
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BU of 6hm2 by Molmil
Structure in P1 form of the PBP AgtB in complex with agropinic acid from A.tumefacien R10
分子名称: 1,2-ETHANEDIOL, Agropine permease, SODIUM ION, ...
著者Morera, S, Marty, L, Vigouroux, A.
登録日2018-09-12
公開日2018-12-26
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Structural basis for two efficient modes of agropinic acid opine import into the bacterial pathogenAgrobacterium tumefaciens.
Biochem. J., 476, 2019
6HUA
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BU of 6hua by Molmil
the competence regulator ComR from Streptococcus vestibularis in complex with its cognate signaling peptide XIP
分子名称: Uncharacterized protein, XIP signaling peptide
著者Nessler, S, Thuillier, J, Ledesma, L, Hols, P.
登録日2018-10-05
公開日2019-10-23
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.389 Å)
主引用文献Molecular dissection of pheromone selectivity in the competence signaling system ComRS of streptococci.
Proc.Natl.Acad.Sci.USA, 117, 2020
6HLX
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BU of 6hlx by Molmil
Structure of the PBP AgaA in complex with agropinic acid from A.tumefacien R10
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETATE ION, ...
著者Morera, S, Marty, L, Vigouroux, A.
登録日2018-09-11
公開日2018-12-26
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural basis for two efficient modes of agropinic acid opine import into the bacterial pathogenAgrobacterium tumefaciens.
Biochem. J., 476, 2019
6HQH
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BU of 6hqh by Molmil
Structure of Agrobacterium tumefaciens B6 strain PBP SocA complexed with Deoxyfructosylglutamine (DFG) at 1.8 A resolution
分子名称: 1,2-ETHANEDIOL, Deoxyfructosylglutamine, Membrane-bound lytic murein transglycosylase F
著者Morera, S, Marty, L.
登録日2018-09-25
公開日2018-10-31
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Basis for High Specificity of Amadori Compound and Mannopine Opine Binding in Bacterial Pathogens.
J.Biol.Chem., 291, 2016
3SVJ
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BU of 3svj by Molmil
Strep Peptide Deformylase with a time dependent thiazolidine amide
分子名称: (4R)-3-(4-[4-(2-chlorophenyl)piperazin-1-yl]-6-{[2-methyl-6-(methylcarbamoyl)phenyl]amino}-1,3,5-triazin-2-yl)-N-methyl-1,3-thiazolidine-4-carboxamide, GLYCEROL, NICKEL (II) ION, ...
著者Campobasso, N, Ward, P.
登録日2011-07-12
公開日2011-07-27
最終更新日2014-11-12
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Understanding the origins of time-dependent inhibition by polypeptide deformylase inhibitors.
Biochemistry, 50, 2011
3STR
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BU of 3str by Molmil
Strep Peptide Deformylase with a time dependent thiazolidine hydroxamic acid
分子名称: (4R)-3-(4-[4-(2-chlorophenyl)piperazin-1-yl]-6-{[2-methyl-6-(methylcarbamoyl)phenyl]amino}-1,3,5-triazin-2-yl)-N-[2-(hydroxyamino)-2-oxoethyl]-1,3-thiazolidine-4-carboxamide, GLYCEROL, NICKEL (II) ION, ...
著者Campobasso, N, Ward, P.
登録日2011-07-11
公開日2011-07-27
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Understanding the origins of time-dependent inhibition by polypeptide deformylase inhibitors.
Biochemistry, 50, 2011
4Y1C
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BU of 4y1c by Molmil
Cyclic hexapeptide cyc[NdPopPKID] in complex with HIV-1 integrase core domain
分子名称: CADMIUM ION, Cyclic hexapeptide cyc[NdPopPKID], Integrase, ...
著者Wielens, J, Chalmers, D.K.
登録日2015-02-07
公開日2015-02-25
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献HEXAPEPTIDE MIMETICS OF LEDGF IN COMPLEX WITH HIV-1 INTEGRASE
To Be Published

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件を2024-07-31に公開中

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