5ZJG
 
 | | Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens complexed with Gly-Gly | | 分子名称: | GLYCEROL, GLYCINE, Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03 L-subunit, ... | | 著者 | Hibi, T, Imaoka, M, Itoh, T, Wakayama, M. | | 登録日 | 2018-03-20 | | 公開日 | 2019-01-16 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.702 Å) | | 主引用文献 | Crystal structure analysis and enzymatic characterization of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens.
Biosci. Biotechnol. Biochem., 83, 2019
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3WG6
 | | Crystal structure of conjugated polyketone reductase C1 from Candida parapsilosis complexed with NADPH | | 分子名称: | Conjugated polyketone reductase C1, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | | 著者 | Qin, H.-M, Yamamura, A, Miyakawa, T, Maruoka, S, Ohtsuka, J, Nagata, K, Kataoka, M, Shimizu, S, Tanokura, M. | | 登録日 | 2013-07-28 | | 公開日 | 2013-08-21 | | 最終更新日 | 2024-05-29 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Crystal structure of conjugated polyketone reductase (CPR-C1) from Candida parapsilosis IFO 0708 complexed with NADPH.
Proteins, 81, 2013
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5AZZ
 | | Crystal structure of seleno-insulin | | 分子名称: | Insulin A chain, Insulin B chain | | 著者 | Watanabe, S, Okumura, M, Arai, K, Takei, T, Asahina, Y, Hojo, H, Iwaoka, M, Inaba, K. | | 登録日 | 2015-10-23 | | 公開日 | 2017-05-03 | | 最終更新日 | 2017-06-14 | | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | | 主引用文献 | Preparation of Selenoinsulin as a Long-Lasting Insulin Analogue.
Angew. Chem. Int. Ed. Engl., 56, 2017
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1VBG
 | | Pyruvate Phosphate Dikinase from Maize | | 分子名称: | MAGNESIUM ION, SULFATE ION, pyruvate,orthophosphate dikinase | | 著者 | Nakanishi, T, Nakatsu, T, Matsuoka, M, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2004-02-26 | | 公開日 | 2005-03-08 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005
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1V7W
 | | Crystal structure of Vibrio proteolyticus chitobiose phosphorylase in complex with GlcNAc | | 分子名称: | 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... | | 著者 | Hidaka, M, Honda, Y, Nirasawa, S, Kitaoka, M, Hayashi, K, Wakagi, T, Shoun, H, Fushinobu, S. | | 登録日 | 2003-12-24 | | 公開日 | 2004-06-22 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Chitobiose phosphorylase from Vibrio proteolyticus, a member of glycosyl transferase family 36, has a clan GH-L-like (alpha/alpha)(6) barrel fold.
Structure, 12, 2004
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1V7V
 | | Crystal structure of Vibrio proteolyticus chitobiose phosphorylase | | 分子名称: | CALCIUM ION, chitobiose phosphorylase | | 著者 | Hidaka, M, Honda, Y, Nirasawa, S, Kitaoka, M, Hayashi, K, Wakagi, T, Shoun, H, Fushinobu, S. | | 登録日 | 2003-12-24 | | 公開日 | 2004-06-22 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Chitobiose phosphorylase from Vibrio proteolyticus, a member of glycosyl transferase family 36, has a clan GH-L-like (alpha/alpha)(6) barrel fold.
Structure, 12, 2004
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1VBH
 | | Pyruvate Phosphate Dikinase with bound Mg-PEP from Maize | | 分子名称: | MAGNESIUM ION, PHOSPHOENOLPYRUVATE, SULFATE ION, ... | | 著者 | Nakanishi, T, Nakatsu, T, Matsuoka, M, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2004-02-26 | | 公開日 | 2005-03-08 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005
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2CQT
 | | Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Crystallized from Sodium/Potassium Phosphate | | 分子名称: | Cellobiose Phosphorylase, GLYCEROL, PHOSPHATE ION, ... | | 著者 | Hidaka, M, Kitaoka, M, Hayashi, K, Wakagi, T, Shoun, H, Fushinobu, S. | | 登録日 | 2005-05-20 | | 公開日 | 2006-05-16 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Structural dissection of the reaction mechanism of cellobiose phosphorylase.
Biochem.J., 398, 2006
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2CQS
 | | Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Crystallized from Ammonium Sulfate | | 分子名称: | Cellobiose Phosphorylase, SULFATE ION, beta-D-glucopyranose | | 著者 | Hidaka, M, Kitaoka, M, Hayashi, K, Wakagi, T, Shoun, H, Fushinobu, S. | | 登録日 | 2005-05-20 | | 公開日 | 2006-05-16 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Structural dissection of the reaction mechanism of cellobiose phosphorylase.
Biochem.J., 398, 2006
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3ED1
 | | Crystal Structure of Rice GID1 complexed with GA3 | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, GIBBERELLIN A3, Gibberellin receptor GID1, ... | | 著者 | Shimada, A, Nakatsu, T, Ueguchi-Tanaka, M, Kato, H, Matsuoka, M. | | 登録日 | 2008-09-02 | | 公開日 | 2008-11-25 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Structural basis for gibberellin recognition by its receptor GID1.
Nature, 456, 2008
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2CW7
 | | Crystal structure of intein homing endonuclease II | | 分子名称: | Endonuclease PI-PkoII, SULFATE ION | | 著者 | Matsumura, H, Takahashi, H, Inoue, T, Hashimoto, H, Nishioka, M, Fujiwara, S, Takagi, M, Imanaka, T, Kai, Y. | | 登録日 | 2005-06-17 | | 公開日 | 2006-04-18 | | 最終更新日 | 2024-04-03 | | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | | 主引用文献 | Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
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2CW8
 | | Crystal structure of intein homing endonuclease II | | 分子名称: | Endonuclease PI-PkoII, GLYCEROL, SULFATE ION | | 著者 | Matsumura, H, Takahashi, H, Inoue, T, Hashimoto, H, Nishioka, M, Fujiwara, S, Takagi, M, Imanaka, T, Kai, Y. | | 登録日 | 2005-06-17 | | 公開日 | 2006-04-18 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
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1V7X
 | | Crystal structure of Vibrio proteolyticus chitobiose phosphorylase in complex with GlcNAc and sulfate | | 分子名称: | 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... | | 著者 | Hidaka, M, Honda, Y, Nirasawa, S, Kitaoka, M, Hayashi, K, Wakagi, T, Shoun, H, Fushinobu, S. | | 登録日 | 2003-12-24 | | 公開日 | 2004-06-22 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Chitobiose phosphorylase from Vibrio proteolyticus, a member of glycosyl transferase family 36, has a clan GH-L-like (alpha/alpha)(6) barrel fold.
Structure, 12, 2004
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3WFZ
 | | Crystal structure of Galacto-N-Biose/Lacto-N-Biose I Phosphorylase C236Y Mutant | | 分子名称: | 2-acetamido-2-deoxy-alpha-D-glucopyranose, Lacto-N-biose phosphorylase | | 著者 | Koyama, Y, Hidaka, M, Kawakami, M, Nishimoto, M, Kitaoka, M. | | 登録日 | 2013-07-25 | | 公開日 | 2013-10-09 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | | 主引用文献 | Directed evolution to enhance thermostability of galacto-N-biose/lacto-N-biose I phosphorylase.
Protein Eng.Des.Sel., 26, 2013
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4R07
 | | Crystal structure of human TLR8 in complex with ORN06 | | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3'-O-[(R)-{[(2R,3aR,4R,6R,6aR)-6-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-hydroxy-2-oxidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]uridine 5'-(dihydrogen phosphate), ... | | 著者 | Tanji, H, Ohto, U, Shibata, T, Taoka, M, Yamauchi, Y, Isobe, T, Miyake, K, Shimizu, T. | | 登録日 | 2014-07-30 | | 公開日 | 2015-01-14 | | 最終更新日 | 2020-07-29 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Toll-like receptor 8 senses degradation products of single-stranded RNA
Nat.Struct.Mol.Biol., 22, 2015
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1N3Y
 | | Crystal structure of the alpha-X beta2 integrin I domain | | 分子名称: | Integrin alpha-X | | 著者 | Vorup-Jensen, T, Ostermeier, C, Shimaoka, M, Hommel, U, Springer, T.A. | | 登録日 | 2002-10-30 | | 公開日 | 2003-02-18 | | 最終更新日 | 2024-04-03 | | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | | 主引用文献 | Structure and allosteric regulation of the alpha X beta 2 integrin I domain.
Proc.Natl.Acad.Sci.USA, 100, 2003
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4TKC
 | | Japanese Marasmius oreades lectin complexed with mannose | | 分子名称: | GLYCEROL, Mannose recognizing lectin, alpha-D-mannopyranose, ... | | 著者 | Noma, Y, Shimokawa, M, Maeganeku, C, Motoshima, H, Watanabe, K, Minami, Y, Yagi, F. | | 登録日 | 2014-05-26 | | 公開日 | 2015-06-03 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (1.29 Å) | | 主引用文献 | Structure of Japanese Marasmius oreades lectin complexed with mannose.
To Be Published
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3WQ8
 | | Monomer structure of hyperthermophilic beta-glucosidase mutant forming a dodecameric structure in the crystal form | | 分子名称: | Beta-glucosidase | | 著者 | Nakabayashi, M, Kataoka, M, Watanabe, M, Ishikawa, K. | | 登録日 | 2014-01-23 | | 公開日 | 2014-07-09 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.81 Å) | | 主引用文献 | Monomer structure of a hyperthermophilic beta-glucosidase mutant forming a dodecameric structure in the crystal form.
Acta Crystallogr.,Sect.F, 70, 2014
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3AI2
 | | The crystal structure of L-sorbose reductase from Gluconobacter frateurii complexed with NADPH | | 分子名称: | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-sorbose reductase | | 著者 | Kubota, K, Nagata, K, Okai, M, Miyazono, K, Tanokura, M. | | 登録日 | 2010-05-07 | | 公開日 | 2011-02-09 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
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2ZAM
 | | Crystal structure of mouse SKD1/VPS4B apo-form | | 分子名称: | Vacuolar protein sorting-associating protein 4B | | 著者 | Inoue, M, Kawasaki, M, Kamikubo, H, Kataoka, M, Kato, R, Yoshimori, T, Wakatsuki, S. | | 登録日 | 2007-10-08 | | 公開日 | 2008-10-07 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | | 主引用文献 | Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
Traffic, 9, 2008
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2Z1N
 | | Crystal structure of APE0912 from Aeropyrum pernix K1 | | 分子名称: | SODIUM ION, dehydrogenase | | 著者 | Ichimura, T, Yamamura, A, Mimoto, F, Ohtsuka, J, Miyazono, K, Okai, M, Kamo, M, Lee, W.-C, Nagata, K, Tanokura, M. | | 登録日 | 2007-05-10 | | 公開日 | 2008-03-18 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | A unique catalytic triad revealed by the crystal structure of APE0912, a short-chain dehydrogenase/reductase family protein from Aeropyrum pernix K1
Proteins, 70, 2008
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2ZAO
 | | Crystal structure of mouse SKD1/VPS4B ADP-form | | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, Vacuolar protein sorting-associating protein 4B | | 著者 | Inoue, M, Kawasaki, M, Kamikubo, H, Kataoka, M, Kato, R, Yoshimori, T, Wakatsuki, S. | | 登録日 | 2007-10-08 | | 公開日 | 2008-10-07 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | | 主引用文献 | Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
Traffic, 9, 2008
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8OZ0
 | | Structure of a human 48S translation initiation complex with eIF4F and eIF4A | | 分子名称: | 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... | | 著者 | Brito Querido, J, Sokabe, M, Diaz-Lopez, I, Gordiyenko, Y, Fraser, C.S, Ramakrishnan, V. | | 登録日 | 2023-05-06 | | 公開日 | 2024-02-07 | | 最終更新日 | 2024-04-24 | | 実験手法 | ELECTRON MICROSCOPY (3.5 Å) | | 主引用文献 | The structure of a human translation initiation complex reveals two independent roles for the helicase eIF4A.
Nat.Struct.Mol.Biol., 31, 2024
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3AI1
 | | The crystal structure of L-sorbose reductase from Gluconobacter frateurii complexed with NADPH and L-sorbose reveals the structure bases of its catalytic mechanism and high substrate selectivity | | 分子名称: | NADPH-sorbose reductase | | 著者 | Kubota, K, Nagata, K, Okai, M, Miyazono, K, Tanokura, M. | | 登録日 | 2010-05-06 | | 公開日 | 2011-02-09 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.38 Å) | | 主引用文献 | The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
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3RI9
 | | Xylanase C from Aspergillus kawachii F131W mutant | | 分子名称: | Endo-1,4-beta-xylanase 3 | | 著者 | Fushinobu, S, Uno, T, Kitaoka, M, Hayashi, K, Matsuzawa, H, Wakagi, T. | | 登録日 | 2011-04-13 | | 公開日 | 2011-09-21 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Mutational analysis of fungal family 11 xylanases on pH optimum determination
J.APPL.GLYOSCI., 58, 2011
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