Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6K4D
DownloadVisualize
BU of 6k4d by Molmil
Ancestral luciferase AncLamp in complex with ATP and D-luciferin
分子名称: (4S)-2-(6-hydroxy-1,3-benzothiazol-2-yl)-4,5-dihydro-1,3-thiazole-4-carboxylic acid, Ancestral luciferase AncLamp, [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (4S)-2-(6-oxidanyl-1,3-benzothiazol-2-yl)-4,5-dihydro-1,3-thiazole-4-carboxylate
著者Oba, Y, Konishi, K, Yano, D, Kato, D, Shirai, T.
登録日2019-05-23
公開日2020-05-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Resurrecting the ancient glow of the fireflies.
Sci Adv, 6, 2020
6K4C
DownloadVisualize
BU of 6k4c by Molmil
Ancestral luciferase AncLamp in complex with DLSA
分子名称: 5'-O-[N-(DEHYDROLUCIFERYL)-SULFAMOYL] ADENOSINE, Ancestral luciferase AncLamp, MAGNESIUM ION
著者Oba, Y, Konishi, K, Yano, D, Kato, D, Shirai, T.
登録日2019-05-23
公開日2020-05-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Resurrecting the ancient glow of the fireflies.
Sci Adv, 6, 2020
6KOG
DownloadVisualize
BU of 6kog by Molmil
Ketosynthase domain in tenuazonic acid synthetase 1 (TAS1).
分子名称: GLYCEROL, Hybrid PKS-NRPS synthetase TAS1, SULFATE ION
著者Yun, C.S, Nishimoto, K, Motoyama, T, Hino, T, Nagano, S, Osada, H.
登録日2019-08-10
公開日2020-07-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Unique features of the ketosynthase domain in a nonribosomal peptide synthetase-polyketide synthase hybrid enzyme, tenuazonic acid synthetase 1.
J.Biol.Chem., 295, 2020
6KO7
DownloadVisualize
BU of 6ko7 by Molmil
Crystal structure of the Ethidium bound RamR determined with XtaLAB Synergy
分子名称: ETHIDIUM, Putative regulatory protein, SULFATE ION
著者Matsumoto, T, Nakashima, R, Yamano, A, Nishino, K.
登録日2019-08-08
公開日2019-10-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Development of a structure determination method using a multidrug-resistance regulator protein as a framework.
Biochem.Biophys.Res.Commun., 518, 2019
6KO9
DownloadVisualize
BU of 6ko9 by Molmil
Crystal structure of the Gefitinib Intermediate 1 bound RamR determined with XtaLAB Synergy
分子名称: 4-[(3-chloranyl-4-fluoranyl-phenyl)amino]-7-methoxy-quinazolin-6-ol, Putative regulatory protein, SULFATE ION
著者Matsumoto, T, Nakashima, R, Yamano, A, Nishino, K.
登録日2019-08-08
公開日2019-10-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Development of a structure determination method using a multidrug-resistance regulator protein as a framework.
Biochem.Biophys.Res.Commun., 518, 2019
6KO8
DownloadVisualize
BU of 6ko8 by Molmil
Crystal structure of the Cholic acid bound RamR determined with XtaLAB Synergy
分子名称: CHOLIC ACID, Putative regulatory protein, SULFATE ION
著者Matsumoto, T, Nakashima, R, Yamano, A, Nishino, K.
登録日2019-08-08
公開日2019-10-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Development of a structure determination method using a multidrug-resistance regulator protein as a framework.
Biochem.Biophys.Res.Commun., 518, 2019
2ZZ9
DownloadVisualize
BU of 2zz9 by Molmil
Structure of aquaporin-4 S180D mutant at 2.8 A resolution by electron crystallography
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Aquaporin-4
著者Tani, K, Mitsuma, T, Hiroaki, Y, Kamegawa, A, Nishikawa, K, Tanimura, Y, Fujiyoshi, Y.
登録日2009-02-06
公開日2009-06-09
最終更新日2023-11-08
実験手法ELECTRON CRYSTALLOGRAPHY (2.8 Å)
主引用文献Mechanism of Aquaporin-4's Fast and Highly Selective Water Conduction and Proton Exclusion.
J.Mol.Biol., 389, 2009
2Z9U
DownloadVisualize
BU of 2z9u by Molmil
Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti at 2.0 A resolution
分子名称: Aspartate aminotransferase, GLYCEROL, SULFATE ION
著者Yoshikane, Y, Yokochi, N, Yamasaki, M, Mizutani, K, Ohnishi, K, Mikami, B, Hayashi, H, Yagi, T.
登録日2007-09-26
公開日2007-11-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099
J.Biol.Chem., 283, 2008
2Z1I
DownloadVisualize
BU of 2z1i by Molmil
Crystal structure of E.coli RNase HI surface charged mutant(Q4R/T40E/Q72H/Q76K/Q80E/T92K/Q105K/Q113R/Q115K)
分子名称: Ribonuclease HI
著者You, D.J, Fukuchi, S, Nishikawa, K, Koga, Y, Takano, K, Kanaya, S.
登録日2007-05-08
公開日2007-11-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Protein Thermostabilization Requires a Fine-tuned Placement of Surface-charged Residues
J.Biochem.(Tokyo), 142, 2007
2Z1J
DownloadVisualize
BU of 2z1j by Molmil
Crystal structure of E.coli RNase HI surface charged mutant(Q4R/T40E/Q72H/Q76K/Q80E/T92K/Q105K/Q113R/Q115K/N143K/T145K)
分子名称: Ribonuclease HI
著者You, D.J, Fukuchi, S, Nishikawa, K, Koga, Y, Takano, K, Kanaya, S.
登録日2007-05-08
公開日2007-11-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Protein Thermostabilization Requires a Fine-tuned Placement of Surface-charged Residues
J.Biochem.(Tokyo), 142, 2007
2Z9V
DownloadVisualize
BU of 2z9v by Molmil
Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxamine
分子名称: 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL, Aspartate aminotransferase, GLYCEROL, ...
著者Yoshikane, Y, Yokochi, N, Yamasaki, M, Mizutani, K, Ohnishi, K, Mikami, B, Hayashi, H, Yagi, T.
登録日2007-09-26
公開日2007-11-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099
J.Biol.Chem., 283, 2008
2Z9X
DownloadVisualize
BU of 2z9x by Molmil
Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxyl-L-alanine
分子名称: 3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE, ALANINE, Aspartate aminotransferase, ...
著者Yoshikane, Y, Yokochi, N, Yamasaki, M, Mizutani, K, Ohnishi, K, Mikami, B, Hayashi, H, Yagi, T.
登録日2007-09-26
公開日2007-11-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099
J.Biol.Chem., 283, 2008
3T37
DownloadVisualize
BU of 3t37 by Molmil
Crystal structure of pyridoxine 4-oxidase from Mesorbium loti
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Probable dehydrogenase
著者Mugo, A.N, Kobayashi, J, Mikami, B, Ohnishi, K, Yagi, T.
登録日2011-07-25
公開日2012-08-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.193 Å)
主引用文献Structure biology and crystallization communication
TO BE PUBLISHED
2D57
DownloadVisualize
BU of 2d57 by Molmil
Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography
分子名称: Aquaporin-4
著者Hiroaki, Y, Tani, K, Kamegawa, A, Gyobu, N, Nishikawa, K, Suzuki, H, Walz, T, Sasaki, S, Mitsuoka, K, Kimura, K, Mizoguchi, A, Fujiyoshi, Y.
登録日2005-10-29
公開日2006-01-31
最終更新日2023-11-08
実験手法ELECTRON CRYSTALLOGRAPHY (3.2 Å)
主引用文献Implications of the Aquaporin-4 Structure on Array Formation and Cell Adhesion
J.Mol.Biol., 355, 2005
7BU4
DownloadVisualize
BU of 7bu4 by Molmil
Crystal structure of CK2a1 complexed with KY49
分子名称: 4-(6-aminocarbonyl-8-oxidanylidene-9-phenyl-7H-purin-2-yl)benzoic acid, Casein Kinase 2 subunit alpha
著者Tsuyuguchi, M, Kinoshita, T.
登録日2020-04-04
公開日2021-04-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.70227313 Å)
主引用文献Design, synthesis and SAR studies of protein kinase CK2 inhibitors with a purine scaffold
To Be Published
3BM1
DownloadVisualize
BU of 3bm1 by Molmil
Crystal structure of a minimal nitroreductase ydjA from Escherichia coli K12 with and without FMN cofactor
分子名称: FLAVIN MONONUCLEOTIDE, Protein ydjA
著者Choi, J.W, Kim, J.S.
登録日2007-12-12
公開日2008-01-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a minimal nitroreductase, ydjA, from Escherichia coli K12 with and without FMN cofactor
J.Mol.Biol., 377, 2008
7VR9
DownloadVisualize
BU of 7vr9 by Molmil
Crystal structure of human serum albumin complex with aripiprazole and myristic acid
分子名称: 7-[4-[4-[2,3-bis(chloranyl)phenyl]piperazin-1-yl]butoxy]-3,4-dihydro-1H-quinolin-2-one, MYRISTIC ACID, Serum albumin
著者Kawai, A, Yamasaki, K, Otagiri, M.
登録日2021-10-22
公開日2022-02-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Effects of Myristate on the Induced Circular Dichroism Spectra of Aripiprazole Bound to Human Serum Albumin: A Structural-Chemical Investigation
Acs Omega, 7, 2022
7WKZ
DownloadVisualize
BU of 7wkz by Molmil
Crystal structure of the HSA complex with mycophenolate and aripiprazole
分子名称: 7-[4-[4-[2,3-bis(chloranyl)phenyl]piperazin-1-yl]butoxy]-3,4-dihydro-1H-quinolin-2-one, MYCOPHENOLIC ACID, Serum albumin
著者Kawai, A, Yamasaki, K.
登録日2022-01-12
公開日2022-12-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.992 Å)
主引用文献Structural Basis of the Change in the Interaction Between Mycophenolic Acid and Subdomain IIA of Human Serum Albumin During Renal Failure.
J.Med.Chem., 66, 2023
7D6J
DownloadVisualize
BU of 7d6j by Molmil
Human serum albumin complexed with benzbromarone
分子名称: Serum albumin, [3,5-bis(bromanyl)-4-oxidanyl-phenyl]-(2-ethyl-1-benzofuran-3-yl)methanone
著者Kawai, A, Yamasaki, K.
登録日2020-09-30
公開日2021-02-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.29 Å)
主引用文献Interaction of Benzbromarone with Subdomains IIIA and IB/IIA on Human Serum Albumin as the Primary and Secondary Binding Regions.
Mol Pharm., 18, 2021
7X7X
DownloadVisualize
BU of 7x7x by Molmil
Human serum albumin complex with deschloro-aripiprazole
分子名称: 7-[4-(4-phenylpiperazin-1-yl)butoxy]-3,4-dihydro-1H-quinolin-2-one, PHOSPHATE ION, Serum albumin
著者Kawai, A, Otagiri, M.
登録日2022-03-10
公開日2022-09-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Chlorine Atoms of an Aripiprazole Molecule Control the Geometry and Motion of Aripiprazole and Deschloro-aripiprazole in Subdomain IIIA of Human Serum Albumin.
Acs Omega, 7, 2022
3H1T
DownloadVisualize
BU of 3h1t by Molmil
The fragment structure of a putative HsdR subunit of a type I restriction enzyme from Vibrio vulnificus YJ016
分子名称: Type I site-specific restriction-modification system, R (Restriction) subunit
著者Park, S.Y, Lee, H.J, Kim, J.S.
登録日2009-04-13
公開日2009-10-20
最終更新日2019-11-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The fragment structure of a putative HsdR subunit of a type I restriction enzyme from Vibrio vulnificus YJ016: implications for DNA restriction and translocation activity
Nucleic Acids Res., 2009
6L48
DownloadVisualize
BU of 6l48 by Molmil
Structure of the human sterol O-acyltransferase 1 in resting state
分子名称: CHOLESTEROL, Sterol O-acyltransferase 1
著者Chen, L, Guan, C, Niu, Y.
登録日2019-10-16
公開日2020-04-29
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural insights into the inhibition mechanism of human sterol O-acyltransferase 1 by a competitive inhibitor.
Nat Commun, 11, 2020
6L47
DownloadVisualize
BU of 6l47 by Molmil
Structure of the human sterol O-acyltransferase 1 in complex with CI-976
分子名称: 2,2-dimethyl-N-(2,4,6-trimethoxyphenyl)dodecanamide, CHOLESTEROL, Sterol O-acyltransferase 1
著者Chen, L, Guan, C, Niu, Y.
登録日2019-10-16
公開日2020-04-29
最終更新日2020-10-07
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural insights into the inhibition mechanism of human sterol O-acyltransferase 1 by a competitive inhibitor.
Nat Commun, 11, 2020
3BF7
DownloadVisualize
BU of 3bf7 by Molmil
1.1 resolution structure of ybfF, a new esterase from Escherichia coli: a unique substrate-binding crevice generated by domain arrangement
分子名称: Esterase YbfF
著者Park, S.K, Kim, J.S.
登録日2007-11-21
公開日2008-01-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献High-resolution structure of ybfF from Escherichia coli K12: a unique substrate-binding crevice generated by domain arrangement
J.Mol.Biol., 376, 2008
3BF8
DownloadVisualize
BU of 3bf8 by Molmil
1.1 resolution structure of ybfF, a new esterase from Escherichia coli: a unique substrate-binding crevice generated by domain arrangement
分子名称: Esterase YbfF, MALONIC ACID
著者Park, S.K, Kim, J.S.
登録日2007-11-21
公開日2008-01-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献High-resolution structure of ybfF from Escherichia coli K12: a unique substrate-binding crevice generated by domain arrangement
J.Mol.Biol., 376, 2008

223532

件を2024-08-07に公開中

PDB statisticsPDBj update infoContact PDBjnumon