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5ZOW
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BU of 5zow by Molmil
Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 288 K (2)
分子名称: 1,2-ETHANEDIOL, COPPER (II) ION, Phenylethylamine oxidase, ...
著者Murakawa, T, Baba, S, Kawano, Y, Hayashi, H, Yano, T, Tanizawa, K, Kumasaka, T, Yamamoto, M, Okajima, T.
登録日2018-04-16
公開日2018-12-19
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.778 Å)
主引用文献In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
5ZP5
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BU of 5zp5 by Molmil
Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 277 K (1)
分子名称: COPPER (II) ION, Phenylethylamine oxidase, SODIUM ION
著者Murakawa, T, Baba, S, Kawano, Y, Hayashi, H, Yano, T, Tanizawa, K, Kumasaka, T, Yamamoto, M, Okajima, T.
登録日2018-04-16
公開日2018-12-19
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.767 Å)
主引用文献In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
5ZPJ
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BU of 5zpj by Molmil
Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pH 6 at 288 K (1)
分子名称: 1,2-ETHANEDIOL, COPPER (II) ION, Phenylethylamine oxidase, ...
著者Murakawa, T, Baba, S, Kawano, Y, Hayashi, H, Yano, T, Tanizawa, K, Kumasaka, T, Yamamoto, M, Okajima, T.
登録日2018-04-16
公開日2018-12-19
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.647 Å)
主引用文献In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
5ZPB
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BU of 5zpb by Molmil
Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 283 K (3)
分子名称: 1,2-ETHANEDIOL, COPPER (II) ION, Phenylethylamine oxidase, ...
著者Murakawa, T, Baba, S, Kawano, Y, Hayashi, H, Yano, T, Tanizawa, K, Kumasaka, T, Yamamoto, M, Okajima, T.
登録日2018-04-16
公開日2018-12-19
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.793 Å)
主引用文献In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
5ZPS
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BU of 5zps by Molmil
Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pH 10 at 288 K (1)
分子名称: 1,2-ETHANEDIOL, COPPER (II) ION, PHENYLACETALDEHYDE, ...
著者Murakawa, T, Baba, S, Kawano, Y, Hayashi, H, Yano, T, Tanizawa, K, Kumasaka, T, Yamamoto, M, Okajima, T.
登録日2018-04-16
公開日2018-12-19
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.748 Å)
主引用文献In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
3AGI
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BU of 3agi by Molmil
High resolution X-ray analysis of Arg-lysozyme complex in the presence of 500 mM Arg
分子名称: ACETATE ION, ARGININE, CHLORIDE ION, ...
著者Ito, L, Shiraki, K, Hasegawa, K, Baba, S, Kumasaka, T.
登録日2010-03-31
公開日2011-03-23
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献High-resolution X-ray analysis reveals binding of arginine to aromatic residues of lysozyme surface: implication of suppression of protein aggregation by arginine
Protein Eng.Des.Sel., 24, 2011
3AGH
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BU of 3agh by Molmil
X-ray analysis of lysozyme in the presence of 200 mM Arg
分子名称: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
著者Ito, L, Shiraki, K, Hasegawa, K, Baba, S, Kumasaka, T.
登録日2010-03-31
公開日2011-03-23
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献High-resolution X-ray analysis reveals binding of arginine to aromatic residues of lysozyme surface: implication of suppression of protein aggregation by arginine
Protein Eng.Des.Sel., 24, 2011
2ZW2
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BU of 2zw2 by Molmil
Crystal Structure of Formylglycinamide Ribonucleotide Amidotransferase III from SULFOLOBUS TOKODAII (STPURS)
分子名称: GLYCEROL, Putative uncharacterized protein STS178
著者Suzuki, S, Tamura, S, Okada, K, Baba, S, Kumasaka, T, Nakagawa, N, Masui, R, Kuramitsu, S, Sampei, G, Kawai, G.
登録日2008-11-27
公開日2009-11-17
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal Structure of Formylglycinamide Ribonucleotide Amidotransferase III from SULFOLOBUS TOKODAII (STPURS)
To be Published
3AJN
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BU of 3ajn by Molmil
Structural basis of glycine amide on suppression of protein aggregation by high resolution X-ray analysis
分子名称: AMINOMETHYLAMIDE, CHLORIDE ION, Lysozyme C, ...
著者Ito, L, Shiraki, K, Hasegawa, K, Kumasaka, T.
登録日2010-06-09
公開日2011-02-16
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Glycine amide shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation
Febs Lett., 585, 2011
3ATO
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BU of 3ato by Molmil
Glycine ethyl ester shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
著者Ito, L, Shiraki, K, Hasegawa, K, Kumasaka, T.
登録日2011-01-06
公開日2012-03-07
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.17 Å)
主引用文献Glycine ethyl ester shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation
To be Published
3ATN
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BU of 3atn by Molmil
Glycine ethyl ester shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION
著者Ito, L, Shiraki, K, Hasegawa, K, Kumasaka, T.
登録日2011-01-06
公開日2012-03-07
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.17 Å)
主引用文献Glycine ethyl ester shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation
To be Published
1HJB
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BU of 1hjb by Molmil
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
分子名称: CCAAT/ENHANCER BINDING PROTEIN BETA, DNA (5'-(*CP*CP*GP*CP*AP*AP*CP*CP*AP*CP* AP*GP*AP*GP*TP*TP*TP*GP*GP*AP*AP*AP*TP*CP*TP*T)-3'), DNA (5'-(*GP*AP*AP*GP*AP*TP*TP*TP*CP*CP* AP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP*TP*TP*GP*CP*G)-3'), ...
著者Tahirov, T.H, Ogata, K.
登録日2001-01-11
公開日2001-03-09
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural Analyses of DNA Recognition by the Aml1/Runx-1 Runt Domain and its Allosteric Control by Cbfbeta
Cell(Cambridge,Mass.), 104, 2001
1HJC
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BU of 1hjc by Molmil
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
分子名称: DNA (5'-(*GP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP* TP*TP*GP*CP*G)-3'), DNA (5'-(CP*CP*GP*CP*AP*AP*CP*CP*AP*CP*AP* GP*AP*GP*TP*T)-3'), RUNT-RELATED TRANSCRIPTION FACTOR 1
著者Tahirov, T.H, Ogata, K.
登録日2001-01-11
公開日2001-03-09
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structural Analyses of DNA Recognition by the Aml1/Runx-1 Runt Domain and its Allosteric Control by Cbfbeta
Cell(Cambridge,Mass.), 104, 2001
1GTW
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BU of 1gtw by Molmil
crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter
分子名称: 5'-D(*AP*AP*TP*GP*TP*GP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*CP*AP*CP*AP*T)-3', CAAT/ENHANCER BINDING PROTEIN BETA
著者Tahirov, T.H, Ogata, K.
登録日2002-01-22
公開日2004-02-06
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural Basis for Flexible Base Recognition by C/Ebpbeta
To be Published
1GU4
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BU of 1gu4 by Molmil
Crystal structure of C/EBPBETA BZIP homodimer bound to a high affinity DNA fragment
分子名称: 5'-D(*AP*AP*TP*AP*TP*TP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*AP*AP*TP*AP*T)-3', CAAT/ENHANCER BINDING PROTEIN BETA
著者Tahirov, T.H, Ogata, K.
登録日2002-01-23
公開日2003-06-26
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Basis for Flexible Base Recognition by C/Ebpbeta
To be Published
1GU5
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BU of 1gu5 by Molmil
Crystal structure of C/EBPBETA BZIP homodimer bound to a DNA fragment from the MIM-1 promoter
分子名称: 5'-D(*AP*TP*GP*AP*TP*TP*GP*GP*CP*CP* AP*AP*CP*AP*CP*A)-3', 5'-D(*TP*TP*GP*TP*GP*TP*TP*GP*GP*CP* CP*AP*AP*TP*CP*A)-3', CAAT/ENHANCER BINDING PROTEIN BETA
著者Tahirov, T.H, Ogata, K.
登録日2002-01-24
公開日2003-06-26
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Basis for Flexible Base Recognition by C/Ebpbeta
To be Published
3KKQ
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BU of 3kkq by Molmil
Crystal structure of M-Ras P40D in complex with GDP
分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ras-related protein M-Ras
著者Muraoka, S, Shima, F, Liao, J, Ijiri, Y, Matsumoto, K, Ye, M, Inoue, T, Kataoka, T.
登録日2009-11-06
公開日2010-06-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structural basis for conformational dynamics of GTP-bound Ras protein
J.Biol.Chem., 285, 2010
3KKM
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BU of 3kkm by Molmil
Crystal structure of H-Ras T35S in complex with GppNHp
分子名称: GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
著者Muraoka, S, Shima, F, Liao, J, Ijiri, Y, Matsumoto, K, Ye, M, Inoue, T, Kataoka, T.
登録日2009-11-06
公開日2010-06-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis for conformational dynamics of GTP-bound Ras protein
J.Biol.Chem., 285, 2010
3KKP
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BU of 3kkp by Molmil
Crystal structure of M-Ras P40D in complex with GppNHp
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein M-Ras
著者Muraoka, S, Shima, F, Liao, J, Ijiri, Y, Matsumoto, K, Ye, M, Inoue, T, Kataoka, T.
登録日2009-11-06
公開日2010-06-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Structural basis for conformational dynamics of GTP-bound Ras protein
J.Biol.Chem., 285, 2010
1H8A
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BU of 1h8a by Molmil
CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3
分子名称: CAAT/ENHANCER BINDING PROTEIN BETA, DNA(5'-(*CP*CP*AP*GP*TP*CP*CP*GP*TP*TP*AP* AP*GP*GP*AP*TP*TP*GP*CP*GP*CP*CP*AP*CP*AP*T)-3'), DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3'), ...
著者Tahirov, T.H, Ogata, K.
登録日2001-01-31
公開日2002-01-28
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Mechanism of C-Myb-C/Ebpbeta Cooperation from Separated Sites on a Promoter
Cell(Cambridge,Mass.), 108, 2002
1H89
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BU of 1h89 by Molmil
CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2
分子名称: CAAT/ENHANCER BINDING PROTEIN BETA, DNA(5'-(*CP*CP*AP*GP*TP*CP*CP*GP*TP*TP*AP* AP*GP*GP*AP*TP*TP*GP*CP*GP*CP*CP*AP*CP*AP*T)-3'), DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3'), ...
著者Tahirov, T.H, Ogata, K.
登録日2001-01-30
公開日2002-01-28
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Mechanism of C-Myb-C/Ebpbeta Cooperation from Separated Sites on a Promoter
Cell(Cambridge,Mass.), 108, 2002
2LWI
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BU of 2lwi by Molmil
Solution structure of H-RasT35S mutant protein in complex with Kobe2601
分子名称: 2-(2,4-dinitrophenyl)-N-(4-fluorophenyl)hydrazinecarbothioamide, GTPase HRas, MAGNESIUM ION, ...
著者Araki, M, Tamura, A, Shima, F, Kataoka, T.
登録日2012-08-01
公開日2013-05-22
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献In silico discovery of small-molecule Ras inhibitors that display antitumor activity by blocking the Ras-effector interaction.
Proc.Natl.Acad.Sci.USA, 110, 2013
1IO4
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BU of 1io4 by Molmil
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
分子名称: CAAT/ENHANCER BINDING PROTEIN BETA, CORE-BINDING FACTOR, BETA SUBUNIT, ...
著者Tahirov, T.H, Ogata, K.
登録日2001-01-10
公開日2001-03-12
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta.
Cell(Cambridge,Mass.), 104, 2001
8Y1Q
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BU of 8y1q by Molmil
Crystal structure of Aquifex aeolicus dUTPase complexed with dUMP.
分子名称: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE, Deoxyuridine 5'-triphosphate nucleotidohydrolase, MAGNESIUM ION
著者Fukui, K, Murakawa, T, Yano, T.
登録日2024-01-25
公開日2024-11-06
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献dUTP pyrophosphatases from hyperthermophilic eubacterium and archaeon: Structural and functional examinations on the suitability for PCR application.
Protein Sci., 33, 2024
8Y1W
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BU of 8y1w by Molmil
Crystal structure of Thermococcus pacificus dUTPase complexed with dUMP.
分子名称: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, GLYCEROL, PHOSPHATE ION, ...
著者Fukui, K, Murakawa, T, Yano, T.
登録日2024-01-25
公開日2024-11-06
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献dUTP pyrophosphatases from hyperthermophilic eubacterium and archaeon: Structural and functional examinations on the suitability for PCR application.
Protein Sci., 33, 2024

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