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8AA0
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BU of 8aa0 by Molmil
Levan utilisation machinery (utilisome) with levan fructo-oligosaccharides DP 8-12
分子名称: DUF4960 domain-containing protein, Glycoside hydrolase family 32, MAGNESIUM ION, ...
著者White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
登録日2022-06-29
公開日2023-06-07
最終更新日2023-06-21
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
8AA2
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BU of 8aa2 by Molmil
Inactive levan utilisation machinery (utilisome) in the presence of levan fructo-oligosaccharides DP 15-25
分子名称: DUF4960 domain-containing protein, Glycoside hydrolase family 32, MAGNESIUM ION, ...
著者White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
登録日2022-06-29
公開日2023-06-07
最終更新日2023-06-21
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
8AA3
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BU of 8aa3 by Molmil
Core SusCD transporter units from the inactive levan utilisome in the presence of levan fructo-oligosaccharides DP 15-25
分子名称: MAGNESIUM ION, SusC homolog, SusD homolog, ...
著者White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
登録日2022-06-29
公開日2023-06-07
最終更新日2023-06-21
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
8A9Y
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BU of 8a9y by Molmil
Substrate-free levan utilisation machinery (utilisome)
分子名称: DUF4960 domain-containing protein, Glycoside hydrolase family 32, MAGNESIUM ION, ...
著者White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
登録日2022-06-29
公開日2023-06-07
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
8BMX
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BU of 8bmx by Molmil
Bacteroides thetaiotaomicron B12 TonB dependent transporter in complex with a surface lipoprotein
分子名称: Putative TonB-linked outer membrane receptor, YncE family protein
著者Abellon-Ruiz, J, Jana, K, Silale, A, Basle, A, Kleinekathofer, U, van den Berg, B.
登録日2022-11-11
公開日2023-09-20
実験手法X-RAY DIFFRACTION (3.72 Å)
主引用文献BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8BYM
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BU of 8bym by Molmil
Outer membrane attachment porin OmpM1 from Veillonella parvula
分子名称: S-layer homology domain-containing protein
著者Silale, A, van den Berg, B.
登録日2022-12-13
公開日2023-11-08
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
8BYT
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BU of 8byt by Molmil
Outer membrane attachment porin OmpM1 from Veillonella parvula, C3 symmetry
分子名称: S-layer homology domain-containing protein
著者Silale, A, van den Berg, B.
登録日2022-12-13
公開日2023-11-08
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (2.78 Å)
主引用文献Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
8BYS
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BU of 8bys by Molmil
Outer membrane attachment porin OmpM1 from Veillonella parvula, native
分子名称: S-layer homology domain-containing protein
著者Silale, A, van den Berg, B.
登録日2022-12-13
公開日2023-11-08
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (3.28 Å)
主引用文献Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
8BZ2
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BU of 8bz2 by Molmil
Crystal structure of outer membrane attachment porin OmpM1 SLH domain
分子名称: S-layer homology domain-containing protein, SULFATE ION
著者Silale, A, van den Berg, B.
登録日2022-12-14
公開日2023-11-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
8BMZ
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BU of 8bmz by Molmil
Bacteroides thetaiotaomicron surface lipoprotein BT1954 bound to adenosylcobalamin
分子名称: Adenosylcobalamin, CHLORIDE ION, Putative surface layer protein, ...
著者Abellon-Ruiz, J, Jana, K, Silale, A, Basle, A, Kleinekathofer, U, van den Berg, B.
登録日2022-11-11
公開日2023-08-16
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8BMY
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BU of 8bmy by Molmil
Bacteroides thetaiotaomicron surface lipoprotein bound to cyanocobalamin
分子名称: CHLORIDE ION, CYANOCOBALAMIN, Putative surface layer protein, ...
著者Abellon-Ruiz, J, Jana, K, Silale, A, Basle, A, Kleinekathofer, U, van den Berg, B.
登録日2022-11-11
公開日2023-08-16
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8BN0
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BU of 8bn0 by Molmil
Bacteroides thetaiotaomicron surface protein BT1954 bound to
分子名称: CHLORIDE ION, COB(II)INAMIDE, CYANIDE ION, ...
著者Abellon-Ruiz, J, Jana, K, Silale, A, Basle, A, Kleinekathofer, U, van den Berg, B.
登録日2022-11-11
公開日2023-08-16
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
1TLY
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BU of 1tly by Molmil
Tsx structure
分子名称: Nucleoside-specific channel-forming protein tsx
著者Ye, J, van den Berg, B.
登録日2004-06-10
公開日2004-08-24
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Crystal structure of the bacterial nucleoside transporter Tsx.
Embo J., 23, 2004
1TLW
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BU of 1tlw by Molmil
Tsx structure complexed with thymidine
分子名称: Nucleoside-specific channel-forming protein tsx, THYMIDINE
著者Ye, J, van den Berg, B.
登録日2004-06-10
公開日2004-08-24
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystal structure of the bacterial nucleoside transporter Tsx.
Embo J., 23, 2004
1TLZ
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BU of 1tlz by Molmil
Tsx structure complexed with uridine
分子名称: Nucleoside-specific channel-forming protein tsx, URIDINE
著者Ye, J, van den Berg, B.
登録日2004-06-10
公開日2004-08-24
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystal structure of the bacterial nucleoside transporter Tsx.
Embo J., 23, 2004
4KAX
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BU of 4kax by Molmil
Crystal structure of the Grp1 PH domain in complex with Arf6-GTP
分子名称: ADP-ribosylation factor 6, CITRIC ACID, Cytohesin-3, ...
著者Lambright, D.G, Malaby, A.W, van den Berg, B.
登録日2013-04-23
公開日2013-08-14
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural basis for membrane recruitment and allosteric activation of cytohesin family Arf GTPase exchange factors.
Proc.Natl.Acad.Sci.USA, 110, 2013
3BS0
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BU of 3bs0 by Molmil
Crystal structure of the P. putida toluene transporter TodX
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, TodX
著者Hearn, E.M, Patel, D.R, van den Berg, B.
登録日2007-12-21
公開日2008-06-10
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Outer-membrane transport of aromatic hydrocarbons as a first step in biodegradation.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2F1C
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BU of 2f1c by Molmil
Crystal structure of the monomeric porin OmpG
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Outer membrane protein G
著者Subbarao, G.V, van den Berg, B.
登録日2005-11-14
公開日2006-06-27
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of the Monomeric Porin OmpG.
J.Mol.Biol., 360, 2006
2R4P
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BU of 2r4p by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant G212E
分子名称: LAURYL DIMETHYLAMINE-N-OXIDE, Long-chain fatty acid transport protein
著者Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
登録日2007-08-31
公開日2008-09-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Transmembrane passage of hydrophobic compounds through a protein channel wall
Nature, 458, 2009
2R4O
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BU of 2r4o by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant delta NPA
分子名称: LAURYL DIMETHYLAMINE-N-OXIDE, Long-chain fatty acid transport protein
著者Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
登録日2007-08-31
公開日2008-09-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Transmembrane passage of hydrophobic compounds through a protein channel wall
Nature, 458, 2009
2R88
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BU of 2r88 by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant delta S3 kink
分子名称: Long-chain fatty acid transport protein
著者Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
登録日2007-09-10
公開日2008-09-23
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Transmembrane passage of hydrophobic compounds through a protein channel wall
Nature, 458, 2009
2R89
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BU of 2r89 by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant delta N3
分子名称: Long-chain fatty acid transport protein
著者Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
登録日2007-09-10
公開日2008-09-23
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献From the Cover: Ligand-gated diffusion across the bacterial outer membrane.
Proc.Natl.Acad.Sci.USA, 108, 2011
2R8A
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BU of 2r8a by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant delta N8
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Long-chain fatty acid transport protein
著者Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
登録日2007-09-10
公開日2008-09-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献From the Cover: Ligand-gated diffusion across the bacterial outer membrane.
Proc.Natl.Acad.Sci.USA, 108, 2011
3DWO
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BU of 3dwo by Molmil
Crystal structure of a Pseudomonas aeruginosa FadL homologue
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Probable outer membrane protein, SULFATE ION
著者Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
登録日2008-07-22
公開日2008-12-16
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Transmembrane passage of hydrophobic compounds through a protein channel wall.
Nature, 458, 2009
3DWN
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BU of 3dwn by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant A77E/S100R
分子名称: LAURYL DIMETHYLAMINE-N-OXIDE, Long-chain fatty acid transport protein
著者Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
登録日2008-07-22
公開日2008-12-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Transmembrane passage of hydrophobic compounds through a protein channel wall.
Nature, 458, 2009

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