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5YJK
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BU of 5yjk by Molmil
Human kallikrein 7 in complex with 1,4-diazepane-7-one 1-acetamide derivative
分子名称: (R)-2-(6-(5-chloro-2-methoxybenzyl)-3-(2,2-dimethylhydrazono)-7-oxo-1,4-diazepan-1-yl)-N-(3-(methylsulfonyl)phenyl)acetamide, CHLORIDE ION, Kallikrein-7
著者Sugawara, H.
登録日2017-10-11
公開日2017-12-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Discovery and structure-activity relationship study of 1,3,6-trisubstituted 1,4-diazepane-7-ones as novel human kallikrein 7 inhibitors
Bioorg. Med. Chem. Lett., 27, 2017
1Y37
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BU of 1y37 by Molmil
Structure of Fluoroacetate Dehalogenase from Burkholderia sp. FA1
分子名称: Fluoroacetate Dehalogenase, MAGNESIUM ION
著者Omi, R.
登録日2004-11-23
公開日2006-02-28
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal Structure of Fluoroacetate Dehalogenase FA1
To be Published
2YXO
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BU of 2yxo by Molmil
Histidinol Phosphate Phosphatase complexed with Sulfate
分子名称: FE (III) ION, GLYCEROL, Histidinol phosphatase, ...
著者Omi, R.
登録日2007-04-26
公開日2007-11-27
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of Monofunctional Histidinol Phosphate Phosphatase from Thermus thermophilus HB8.
Biochemistry, 46, 2007
2YZ5
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BU of 2yz5 by Molmil
Histidinol Phosphate Phosphatase complexed with Phosphate
分子名称: FE (III) ION, GLYCEROL, Histidinol phosphatase, ...
著者Omi, R.
登録日2007-05-03
公開日2007-11-27
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure of Monofunctional Histidinol Phosphate Phosphatase from Thermus thermophilus HB8.
Biochemistry, 46, 2007
8HSH
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BU of 8hsh by Molmil
Thermus thermophilus RNA polymerase coreenzyme
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Murayama, Y, Ehara, H, Sekine, S.
登録日2022-12-19
公開日2023-05-03
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis of the transcription termination factor Rho engagement with transcribing RNA polymerase from Thermus thermophilus.
Sci Adv, 9, 2023
8HSG
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BU of 8hsg by Molmil
Thermus thermophilus RNA polymerase elongation complex
分子名称: DNA (27-MER), DNA (37-MER), DNA-directed RNA polymerase subunit alpha, ...
著者Murayama, Y, Ehara, H, Sekine, S.
登録日2022-12-19
公開日2023-05-03
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural basis of the transcription termination factor Rho engagement with transcribing RNA polymerase from Thermus thermophilus.
Sci Adv, 9, 2023
8HSL
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BU of 8hsl by Molmil
Thermus thermophilus RNA polymerase bound with an inverted Rho hexamer
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase subunit alpha, ...
著者Murayama, Y, Ehara, H, Sekine, S.
登録日2022-12-19
公開日2023-05-03
実験手法ELECTRON MICROSCOPY (5.8 Å)
主引用文献Structural basis of the transcription termination factor Rho engagement with transcribing RNA polymerase from Thermus thermophilus.
Sci Adv, 9, 2023
8HSJ
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BU of 8hsj by Molmil
Thermus thermophilus transcription termination factor Rho bound with ADP-BeF3
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
著者Murayama, Y, Ehara, H, Sekine, S.
登録日2022-12-19
公開日2023-05-03
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structural basis of the transcription termination factor Rho engagement with transcribing RNA polymerase from Thermus thermophilus.
Sci Adv, 9, 2023
8HSR
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BU of 8hsr by Molmil
Thermus thermophilus Rho-engaged RNAP elongation complex
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA (31-MER), ...
著者Murayama, Y, Ehara, H, Sekine, S.
登録日2022-12-20
公開日2023-05-03
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structural basis of the transcription termination factor Rho engagement with transcribing RNA polymerase from Thermus thermophilus.
Sci Adv, 9, 2023
7CSS
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BU of 7css by Molmil
Solution structure of the topological isomer of Heat-stable enterotoxin produced by Enterotoxigenic Escherichia coli
分子名称: CYS-CYS-GLU-LEU-CYS-CYS-ASN-PRO-ALA-CYS-THR-GLY-CYS
著者Shimamoto, S, Hidaka, Y.
登録日2020-08-17
公開日2020-12-16
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Topological Regulation of the Bioactive Conformation of a Disulfide-Rich Peptide, Heat-Stable Enterotoxin.
Molecules, 25, 2020
7D37
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BU of 7d37 by Molmil
Solution structure of Acm2-precursor peptide of Heat-stable enterotoxin produced by Enterotoxigenic Escherichia coli
分子名称: CYS-CY1-GLU-LEU-CYS-CYS-ASN-PRO-ALA-CY1-THR-GLY-CYS
著者Shimamoto, S, Hidaka, Y.
登録日2020-09-18
公開日2020-12-16
実験手法SOLUTION NMR
主引用文献Topological Regulation of the Bioactive Conformation of a Disulfide-Rich Peptide, Heat-Stable Enterotoxin.
Molecules, 25, 2020
1KA9
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BU of 1ka9 by Molmil
Imidazole Glycerol Phosphate Synthase
分子名称: imidazole glycerol phosphate synthase
著者Omi, R, Miyahara, I, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-11-01
公開日2002-12-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of imidazole glycerol phosphate synthase from Thermus thermophilus HB8: open-closed conformational change and ammonia tunneling.
J.Biochem., 132, 2002
7Y1G
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BU of 7y1g by Molmil
Crystal structure of human PRKACA complexed with DS01080522
分子名称: 1-chloranyl-~{N}-[(~{S})-(3-chloranyl-4-cyano-phenyl)-[(2~{R},4~{S})-4-oxidanylpyrrolidin-2-yl]methyl]-7-methoxy-isoquinoline-6-carboxamide, ZINC ION, cAMP-dependent protein kinase catalytic subunit alpha
著者Suzuki, M, Ubukata, O, Toyoda, A.
登録日2022-06-08
公開日2022-09-28
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Novel protein kinase cAMP-Activated Catalytic Subunit Alpha (PRKACA) inhibitor shows anti-tumor activity in a fibrolamellar hepatocellular carcinoma model.
Biochem.Biophys.Res.Commun., 621, 2022
2Z4G
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BU of 2z4g by Molmil
Histidinol Phosphate Phosphatase from Thermus thermophilus HB8
分子名称: FE (III) ION, GLYCEROL, Histidinol phosphatase, ...
著者Omi, R.
登録日2007-06-17
公開日2007-11-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of Monofunctional Histidinol Phosphate Phosphatase from Thermus thermophilus HB8.
Biochemistry, 46, 2007
3A9Z
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BU of 3a9z by Molmil
Crystal structure of ras selenocysteine lyase in complex with selenopropionate
分子名称: 3-selanylpropanoic acid, PHOSPHATE ION, PYRIDOXAL-5'-PHOSPHATE, ...
著者Omi, R, Hirotsu, K.
登録日2009-11-09
公開日2010-03-16
最終更新日2013-10-30
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Reaction mechanism and molecular basis for selenium/sulfur discrimination of selenocysteine lyase.
J.Biol.Chem., 285, 2010
3A9Y
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BU of 3a9y by Molmil
Crystal structure of rat selenocysteine lyase in complex with L-cysteine
分子名称: CYSTEINE, GLYCEROL, PHOSPHATE ION, ...
著者Omi, R, Hirotsu, K.
登録日2009-11-09
公開日2010-03-16
最終更新日2013-10-30
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Reaction mechanism and molecular basis for selenium/sulfur discrimination of selenocysteine lyase.
J.Biol.Chem., 285, 2010
3A9X
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BU of 3a9x by Molmil
Crystal structure of rat selenocysteine lyase
分子名称: PHOSPHATE ION, PYRIDOXAL-5'-PHOSPHATE, Selenocysteine lyase
著者Omi, R, Hirotsu, K.
登録日2009-11-08
公開日2010-03-16
最終更新日2013-10-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Reaction mechanism and molecular basis for selenium/sulfur discrimination of selenocysteine lyase.
J.Biol.Chem., 285, 2010
1VE4
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BU of 1ve4 by Molmil
ATP-Phosphoribosyltransferase(hisG) from Thermus thermophilus HB8
分子名称: ATP phosphoribosyltransferase, GLYCEROL, SULFATE ION
著者Omi, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-27
公開日2005-06-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Crystal structure of ATP-phosphoribosyltransferase(HisG)
To be Published
1VB3
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BU of 1vb3 by Molmil
Crystal Structure of Threonine Synthase from Escherichia coli
分子名称: 2-OXO-5-PHOSPHONOPENTANOIC ACID, SULFATE ION, Threonine synthase
著者Omi, R.
登録日2004-02-21
公開日2005-06-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of Threonine Synthase from Escherichia coli
To be Published
1V7C
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BU of 1v7c by Molmil
Crystal structure of threonine synthase from thermus thermophilus hb8 in complex with a substrate analogue
分子名称: (2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID, THREONINE SYNTHASE
著者Omi, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-12-16
公開日2003-12-30
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of threonine synthase from Thermus thermophilus HB8: conformational change, substrate recognition, and mechanism.
J.Biol.Chem., 278, 2003
6OHD
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BU of 6ohd by Molmil
P38 in complex with T-3220137
分子名称: 3-(3-tert-butyl-2-oxo-2,3-dihydro-1H-imidazo[4,5-b]pyridin-6-yl)-4-methyl-N-(1,2-oxazol-3-yl)benzamide, Mitogen-activated protein kinase 14
著者Lane, W, Saikatendu, K.
登録日2019-04-05
公開日2019-11-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure-Based Design, Synthesis, and Biological Evaluation of Imidazo[4,5-b]Pyridin-2-one-Based p38 MAP Kinase Inhibitors: Part 2.
Chemmedchem, 14, 2019
6M95
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BU of 6m95 by Molmil
Structure-based Design, Synthesis, and Biological Evaluation of Imidazo[4,5-b]pyridine-2-one based p38 MAP Kinase Inhibitors by scaffold hopping: compound 1
分子名称: (4-benzylpiperidin-1-yl)[2-methoxy-4-(methylsulfanyl)phenyl]methanone, Mitogen-activated protein kinase 14
著者Lane, W, Okada, K.
登録日2018-08-22
公開日2019-04-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure-Based Design, Synthesis, and Biological Evaluation of Imidazo[4,5-b]pyridin-2-one-Based p38 MAP Kinase Inhibitors: Part 1.
Chemmedchem, 14, 2019
6M9L
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BU of 6m9l by Molmil
Structure-based Design, Synthesis, and Biological Evaluation of Imidazo[4,5-b]pyridine-2-one based p38 MAP Kinase Inhibitors by scaffold hopping - compound 10
分子名称: 3-benzyl-6-[(2,4-difluorophenyl)amino]-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one, Mitogen-activated protein kinase 14
著者Lane, W, Okada, K.
登録日2018-08-23
公開日2019-04-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structure-Based Design, Synthesis, and Biological Evaluation of Imidazo[4,5-b]pyridin-2-one-Based p38 MAP Kinase Inhibitors: Part 1.
Chemmedchem, 14, 2019
2BZ7
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BU of 2bz7 by Molmil
Oxidized and reduced structures of a mutant Plastocyanin of fern
分子名称: COPPER (II) ION, PLASTOCYANIN
著者Hulsker, R, Thomassen, E.A.J, Ubbink, M.
登録日2005-08-12
公開日2006-11-20
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Protonation of a Histidine Copper Ligand in Fern Plastocyanin.
J.Am.Chem.Soc., 129, 2007
2BZC
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BU of 2bzc by Molmil
Oxidized and reduced structures of a mutant Plastocyanin of fern
分子名称: COPPER (I) ION, PLASTOCYANIN
著者Hulsker, R, Thomassen, E.A.J, Ubbink, M.
登録日2005-08-15
公開日2006-11-20
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Protonation of a Histidine Copper Ligand in Fern Plastocyanin.
J.Am.Chem.Soc., 129, 2007

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