Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6F2B
DownloadVisualize
BU of 6f2b by Molmil
Crystal structure of the complex Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO1 with Fe(II)/alpha-ketoglutarate
分子名称: 2-OXOGLUTARIC ACID, FE (II) ION, L-lysine 3-hydroxylase
著者Isabet, T, Stura, E.A, Legrand, P, Zaparucha, A, Bastard, K.
登録日2017-11-24
公開日2018-11-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family.
Sci Rep, 8, 2018
6EXF
DownloadVisualize
BU of 6exf by Molmil
Crystal structure of the complex Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO5 with Fe(II)/Lysine
分子名称: FE (III) ION, GLYCEROL, L-lysine 4-hydroxylase, ...
著者Isabet, T, Stura, E, Legrand, P, Zaparucha, A, Bastard, K.
登録日2017-11-08
公開日2018-11-14
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family.
Sci Rep, 8, 2018
6F9P
DownloadVisualize
BU of 6f9p by Molmil
Crystal structure of the Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO5 with Re(II)
分子名称: CHLORIDE ION, GLYCEROL, L-lysine 4-hydroxylase, ...
著者Isabet, T, Stura, E, Legrand, P, Zaparucha, A, Bastard, K.
登録日2017-12-15
公開日2018-11-14
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family.
Sci Rep, 8, 2018
6EUO
DownloadVisualize
BU of 6euo by Molmil
Crystal structure of APO Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO5
分子名称: D-MALATE, FE (III) ION, GLYCEROL, ...
著者Isabet, T, Stura, E, Legrand, P, Zaparucha, A, Bastard, K.
登録日2017-10-30
公開日2018-11-14
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family.
Sci Rep, 8, 2018
6FI9
DownloadVisualize
BU of 6fi9 by Molmil
Crystal Structure of a zinc-responsive MarR family member, Lactococcus lactis ZitR
分子名称: Transcriptional regulator ZitR, ZINC ION
著者Varela, P.F, Legrand, P.
登録日2018-01-17
公開日2019-02-20
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Biophysical and structural characterization of a zinc-responsive repressor of the MarR superfamily.
PLoS ONE, 14, 2019
6EXH
DownloadVisualize
BU of 6exh by Molmil
Crystal structure of the complex Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO5 with Fe(II)/succinate/(4R)-4-hydroxy-L-lysine
分子名称: 4-HYDROXY-LYSINE, FE (III) ION, GLYCEROL, ...
著者Isabet, T, Stura, E, Legrand, P, Zaparucha, A, Bastard, K.
登録日2017-11-08
公開日2018-11-14
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family.
Sci Rep, 8, 2018
6F2E
DownloadVisualize
BU of 6f2e by Molmil
Crystal structure of the APO Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO1
分子名称: ACETIC ACID, L-lysine 3-hydroxylase
著者Isabet, T, Stura, E.A, Legrand, P, Zaparucha, A, Bastard, K.
登録日2017-11-24
公開日2018-11-14
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family.
Sci Rep, 8, 2018
6EUR
DownloadVisualize
BU of 6eur by Molmil
Crystal structure of the complex Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO5 with Fe(II)/alpha-ketoglutarate
分子名称: 2-OXOGLUTARIC ACID, FE (III) ION, GLYCEROL, ...
著者Isabet, T, Stura, E, Legrand, P, Zaparucha, A, Bastard, K.
登録日2017-10-31
公開日2018-11-14
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family.
Sci Rep, 8, 2018
6F6J
DownloadVisualize
BU of 6f6j by Molmil
Crystal structure of the Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO1 with Fe(II)/succinate/(3S)-3-hydroxy-L-lysine
分子名称: (2~{S},3~{R})-2,6-bis(azanyl)-3-oxidanyl-hexanoic acid, ACETATE ION, FE (III) ION, ...
著者Isabet, T, Stura, E.A, Legrand, P, Zaparucha, A, Bastard, K.
登録日2017-12-05
公開日2018-11-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family.
Sci Rep, 8, 2018
6ZPA
DownloadVisualize
BU of 6zpa by Molmil
Cyanophage S-2L HD phosphohydrolase (DatZ) bound to dA and one catalytic Zn2+ ion
分子名称: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, DatZ, LITHIUM ION, ...
著者Czernecki, D, Legrand, P, Delarue, M.
登録日2020-07-08
公開日2021-03-03
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (0.86000258 Å)
主引用文献How cyanophage S-2L rejects adenine and incorporates 2-aminoadenine to saturate hydrogen bonding in its DNA.
Nat Commun, 12, 2021
6ZPC
DownloadVisualize
BU of 6zpc by Molmil
Cyanophage S-2L HD phosphohydrolase (DatZ) bound to dATP
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DatZ, LITHIUM ION, ...
著者Czernecki, D, Legrand, P, Delarue, M.
登録日2020-07-08
公開日2021-03-03
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.2683593 Å)
主引用文献How cyanophage S-2L rejects adenine and incorporates 2-aminoadenine to saturate hydrogen bonding in its DNA.
Nat Commun, 12, 2021
6ZP9
DownloadVisualize
BU of 6zp9 by Molmil
Cyanophage S-2L Primase-Polymerase (PrimPol), AEP domain (PP-N190)
分子名称: CALCIUM ION, PrimPol AEP domain (PP-N190)
著者Czernecki, D, Legrand, P, Delarue, M.
登録日2020-07-08
公開日2021-03-03
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.50002229 Å)
主引用文献How cyanophage S-2L rejects adenine and incorporates 2-aminoadenine to saturate hydrogen bonding in its DNA.
Nat Commun, 12, 2021
6ZPB
DownloadVisualize
BU of 6zpb by Molmil
Cyanophage S-2L HD phosphohydrolase (DatZ) bound to dA and two catalytic Co2+ ions
分子名称: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, COBALT (II) ION, DatZ
著者Czernecki, D, Legrand, P, Delarue, M.
登録日2020-07-08
公開日2021-03-03
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.72097385 Å)
主引用文献How cyanophage S-2L rejects adenine and incorporates 2-aminoadenine to saturate hydrogen bonding in its DNA.
Nat Commun, 12, 2021
6ZUF
DownloadVisualize
BU of 6zuf by Molmil
Urea-based Foldamer Inhibitor chimera C2 in complex with ASF1 Histone chaperone
分子名称: C2 foldamer/peptide hybrid inhibitor of histone chaperone ASF1, GLYCEROL, Histone chaperone ASF1A, ...
著者Bakail, M, Mbianda, J, Perrin, E.M, Guerois, R, Legrand, P, Traore, S, Douat, C, Guichard, G, Ochsenbein, F.
登録日2020-07-22
公開日2021-06-09
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.798 Å)
主引用文献Optimal anchoring of a foldamer inhibitor of ASF1 histone chaperone through backbone plasticity.
Sci Adv, 7, 2021
7AWQ
DownloadVisualize
BU of 7awq by Molmil
Structure of the thermostabilized EAAT1 cryst-E386Q mutant in complex with L-ASP, sodium ions and the allosteric inhibitor UCPH101
分子名称: 2-Amino-5,6,7,8-tetrahydro-4-(4-methoxyphenyl)-7-(naphthalen-1-yl)-5-oxo-4H-chromene-3-carbonitrile, ASPARTIC ACID, BARIUM ION, ...
著者Canul-Tec, J.C, Legrand, P, Reyes, N.
登録日2020-11-08
公開日2021-10-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献The ion-coupling mechanism of human excitatory amino acid transporters.
Embo J., 41, 2022
7AWM
DownloadVisualize
BU of 7awm by Molmil
Structure of the thermostabilized EAAT1 cryst mutant in complex with L-ASP, three sodium ions and the allosteric inhibitor UCPH101
分子名称: 2-Amino-5,6,7,8-tetrahydro-4-(4-methoxyphenyl)-7-(naphthalen-1-yl)-5-oxo-4H-chromene-3-carbonitrile, ASPARTIC ACID, BARIUM ION, ...
著者Canul-Tec, J.C, Legrand, P, Reyes, N.
登録日2020-11-08
公開日2021-10-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献The ion-coupling mechanism of human excitatory amino acid transporters.
Embo J., 41, 2022
7AWN
DownloadVisualize
BU of 7awn by Molmil
Structure of the thermostabilized EAAT1 cryst mutant in complex with rubidium and barium and the allosteric inhibitor UCPH101
分子名称: 2-Amino-5,6,7,8-tetrahydro-4-(4-methoxyphenyl)-7-(naphthalen-1-yl)-5-oxo-4H-chromene-3-carbonitrile, BARIUM ION, Excitatory amino acid transporter 1,Neutral amino acid transporter B(0),Excitatory amino acid transporter 1, ...
著者Canul-Tec, J.C, Legrand, P, Reyes, N.
登録日2020-11-08
公開日2021-10-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.92 Å)
主引用文献The ion-coupling mechanism of human excitatory amino acid transporters.
Embo J., 41, 2022
7AWL
DownloadVisualize
BU of 7awl by Molmil
Structure of the thermostabilized EAAT1 cryst-II mutant in complex with barium and the allosteric inhibitor UCPH101
分子名称: 2-Amino-5,6,7,8-tetrahydro-4-(4-methoxyphenyl)-7-(naphthalen-1-yl)-5-oxo-4H-chromene-3-carbonitrile, BARIUM ION, Excitatory amino acid transporter 1, ...
著者Canul-Tec, J.C, Legrand, P, Reyes, N.
登録日2020-11-08
公開日2021-10-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献The ion-coupling mechanism of human excitatory amino acid transporters.
Embo J., 41, 2022
7AWP
DownloadVisualize
BU of 7awp by Molmil
Structure of the thermostabilized EAAT1 cryst-II mutant in complex with rubidium and barium ions and the allosteric inhibitor UCPH101
分子名称: 2-Amino-5,6,7,8-tetrahydro-4-(4-methoxyphenyl)-7-(naphthalen-1-yl)-5-oxo-4H-chromene-3-carbonitrile, BARIUM ION, Excitatory amino acid transporter 1,Neutral amino acid transporter B(0),Excitatory amino acid transporter 1, ...
著者Canul-Tec, J.C, Legrand, P, Reyes, N.
登録日2020-11-08
公開日2021-10-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.91 Å)
主引用文献The ion-coupling mechanism of human excitatory amino acid transporters.
Embo J., 41, 2022
7ANQ
DownloadVisualize
BU of 7anq by Molmil
Complete PCSK9 C-ter domain in complex with VHH P1.40
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Proprotein convertase subtilisin/kexin type 9, SULFATE ION, ...
著者Ciccone, L, Legrand, P, Stura, E.A, Dive, V, Seidahn, N.G, Fruchart Gaillard, C.
登録日2020-10-12
公開日2021-10-20
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Molecular interactions of PCSK9 with an inhibitory nanobody, CAP1 and HLA-C: Functional regulation of LDLR levels.
Mol Metab, 67, 2022
6SCY
DownloadVisualize
BU of 6scy by Molmil
U34-tRNA thiolase NcsA from Methanococcus maripaludis with its [4Fe-4S] cluster
分子名称: IRON/SULFUR CLUSTER, SULFATE ION, ZINC ION, ...
著者Bimai, O, Legrand, P, Golinelli-Pimpaneau, B.
登録日2019-07-25
公開日2020-08-26
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献The thiolation of uridine 34 in tRNA, which controls protein translation, depends on a [4Fe-4S] cluster in the archaeum Methanococcus maripaludis.
Sci Rep, 13, 2023
6TMR
DownloadVisualize
BU of 6tmr by Molmil
Mokola virus glycoprotein, monomeric post-fusion conformation
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein, TERBIUM(III) ION
著者Belot, L, Roche, S, Legrand, P, Gaudin, Y, Albertini, A.
登録日2019-12-05
公開日2020-02-19
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.893 Å)
主引用文献Crystal structure of Mokola virus glycoprotein in its post-fusion conformation.
Plos Pathog., 16, 2020
6T1Z
DownloadVisualize
BU of 6t1z by Molmil
LmrP from L. lactis, in an outward-open conformation, bound to Hoechst 33342
分子名称: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE, 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DODECYL-ALPHA-D-MALTOSIDE, ...
著者Hutchin, A, Debruycker, V, Masureel, M, Legrand, P, Remaut, H, Govaerts, C.
登録日2019-10-07
公開日2020-07-29
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献An embedded lipid in the multidrug transporter LmrP suggests a mechanism for polyspecificity.
Nat.Struct.Mol.Biol., 27, 2020
8AUC
DownloadVisualize
BU of 8auc by Molmil
Structure of peptidoglycan hydrolase Cg1735 from Corynebacterium glutamicum, trigonal crystal form
分子名称: Cell wall-associated hydrolases (Invasion-associated proteins), TETRACHLOROPLATINATE(II)
著者Gaday, Q, Wehenkel, A.M, Alzari, P.M, Legrand, P.
登録日2022-08-25
公開日2023-01-18
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献FtsEX-independent control of RipA-mediated cell separation in Corynebacteriales.
Proc.Natl.Acad.Sci.USA, 119, 2022
8AA9
DownloadVisualize
BU of 8aa9 by Molmil
Crystal structure of the Rpa1 AROD-OB-1 domains
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Replication factor A
著者Madru, C, Legrand, P, Sauguet, L.
登録日2022-06-30
公開日2023-05-03
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献DNA-binding mechanism and evolution of replication protein A.
Nat Commun, 14, 2023

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon