1T7H
| X-ray structure of [Lys(-2)-Arg(-1)-des(17-21)]-endothelin-1 peptide | 分子名称: | Endothelin-1 | 著者 | Hoh, F, Cerdan, R, Kaas, Q, Nishi, Y, Chiche, L, Kubo, S, Chino, N, Kobayashi, Y, Dumas, C, Aumelas, A. | 登録日 | 2004-05-10 | 公開日 | 2004-12-21 | 最終更新日 | 2017-10-11 | 実験手法 | X-RAY DIFFRACTION (1.13 Å) | 主引用文献 | High-resolution X-ray structure of the unexpectedly stable dimer of the [Lys(-2)-Arg(-1)-des(17-21)]endothelin-1 peptide Biochemistry, 43, 2004
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1DQ3
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1IZ4
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1J25
| Crystal structure of archaeal XPF/Mus81 homolog, Hef from Pyrococcus furiosus, nuclease domain, Mn cocrystal | 分子名称: | ATP-dependent RNA helicase, putative, MANGANESE (II) ION | 著者 | Nishino, T, Komori, K, Ishino, Y, Morikawa, K. | 登録日 | 2002-12-25 | 公開日 | 2003-04-22 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.78 Å) | 主引用文献 | X-Ray and Biochemical Anatomy of an Archaeal XPF/Rad1/Mus81 Family Nuclease. Similarity between Its Endonuclease Domain and Restriction Enzymes Structure, 11, 2003
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1J24
| Crystal structure of archaeal XPF/Mus81 homolog, Hef from Pyrococcus furiosus, nuclease domain, Ca cocrystal | 分子名称: | ATP-dependent RNA helicase, putative, CALCIUM ION | 著者 | Nishino, T, Komori, K, Ishino, Y, Morikawa, K. | 登録日 | 2002-12-25 | 公開日 | 2003-04-22 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.78 Å) | 主引用文献 | X-Ray and Biochemical Anatomy of an Archaeal XPF/Rad1/Mus81 Family Nuclease. Similarity between Its Endonuclease Domain and Restriction Enzymes Structure, 11, 2003
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1J40
| Direct observation of photolysis-induced tertiary structural changes in human haemoglobin; Crystal structure of alpha(Ni)-beta(Fe-CO) hemoglobin (laser unphotolysed) | 分子名称: | BUT-2-ENEDIAL, CARBON MONOXIDE, Hemoglobin alpha Chain, ... | 著者 | Adachi, S, Park, S.-Y, Tame, J.R.H, Shiro, Y, Shibayama, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2003-02-21 | 公開日 | 2003-07-22 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | 主引用文献 | Direct observation of photolysis-induced tertiary structural changes in hemoglobin Proc.Natl.Acad.Sci.USA, 100, 2003
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8J7R
| Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A (J-K-St/eIF4G focused) | 分子名称: | Eukaryotic translation initiation factor 4 gamma 1, IRES RNA (J-K-St), MAGNESIUM ION | 著者 | Suzuki, H, Fujiyoshi, Y, Imai, S, Shimada, I. | 登録日 | 2023-04-28 | 公開日 | 2023-08-02 | 最終更新日 | 2023-09-13 | 実験手法 | ELECTRON MICROSCOPY (3.7 Å) | 主引用文献 | Dynamically regulated two-site interaction of viral RNA to capture host translation initiation factor. Nat Commun, 14, 2023
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1IZO
| Cytochrome P450 BS beta Complexed with Fatty Acid | 分子名称: | Cytochrome P450 152A1, PALMITOLEIC ACID, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Lee, D.S, Yamada, A, Sugimoto, H, Matsunaga, I, Ogura, H, Ichihara, K, Adachi, S, Park, S.Y, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2002-10-10 | 公開日 | 2003-03-18 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Substrate Recognition and Molecular Mechanism of Fatty Acid Hydroxylation by Cytochrome P450 from Bacillus subtilis. CRYSTALLOGRAPHIC, SPECTROSCOPIC, AND MUTATIONAL STUDIES. J.Biol.Chem., 278, 2003
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7W79
| Heme exporter HrtBA in complex with Mn-AMPPNP | 分子名称: | ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, Putative ABC transport system integral membrane protein, ... | 著者 | Hisano, T, Nakamura, H, Rahman, M.M, Tosha, T, Shirouzu, M, Shiro, Y. | 登録日 | 2021-12-04 | 公開日 | 2022-06-22 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria. Proc.Natl.Acad.Sci.USA, 119, 2022
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7W7A
| Heme exporter in complex with Mn-containing protoporphyrin IX, Mn-anomalous data | 分子名称: | (1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ... | 著者 | Hisano, T, Nakamura, H, Rahman, M.M, Tosha, T, Shirouzu, M, Shiro, Y. | 登録日 | 2021-12-04 | 公開日 | 2022-06-22 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (3.204 Å) | 主引用文献 | Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria. Proc.Natl.Acad.Sci.USA, 119, 2022
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7W7D
| Heme exporter HrtBA in complex with heme | 分子名称: | PROTOPORPHYRIN IX CONTAINING FE, Putative ABC transport system integral membrane protein, Putative ABC transport system, ... | 著者 | Hisano, T, Nakamura, H, Rahman, M.M, Tosha, T, Shiro, Y, Shirouzu, M. | 登録日 | 2021-12-04 | 公開日 | 2022-06-22 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (3.4 Å) | 主引用文献 | Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria. Proc.Natl.Acad.Sci.USA, 119, 2022
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7W7B
| Heme exporter HrtBA in complex with protoporphyrin IX containing manganese(III), high resolution data | 分子名称: | (1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE, DI(HYDROXYETHYL)ETHER, PROTOPORPHYRIN IX CONTAINING MN, ... | 著者 | Hisano, T, Nakamura, H, Rahman, M.M, Tosha, T, Shirouzu, M, Shiro, Y. | 登録日 | 2021-12-04 | 公開日 | 2022-06-22 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria. Proc.Natl.Acad.Sci.USA, 119, 2022
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7W78
| Heme exporter HrtBA in complex with Mg-AMPPNP | 分子名称: | ACETATE ION, DODECANE, GLYCEROL, ... | 著者 | Hisano, T, Nakamura, H, Rahman, M.M, Tosha, T, Shirouzu, M, Shiro, Y. | 登録日 | 2021-12-04 | 公開日 | 2022-06-22 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.884 Å) | 主引用文献 | Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria. Proc.Natl.Acad.Sci.USA, 119, 2022
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7W7C
| Heme exporter in the unliganded form | 分子名称: | Putative ABC transport system integral membrane protein, Putative ABC transport system, ATP-binding protein, ... | 著者 | Rahman, M.M, Hisano, T, Nakamura, H, Tosha, T, Shirouzu, M, Shiro, Y. | 登録日 | 2021-12-04 | 公開日 | 2022-06-22 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria. Proc.Natl.Acad.Sci.USA, 119, 2022
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5H47
| Crystal structure of AOL complexed with 2-MeSe-Fuc | 分子名称: | Uncharacterized protein, methyl 6-deoxy-2-Se-methyl-2-seleno-alpha-L-galactopyranoside | 著者 | Kato, R, Nishikawa, Y, Makyio, H. | 登録日 | 2016-10-31 | 公開日 | 2017-01-25 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Synthesis of seleno-fucose compounds and their application to the X-ray structural determination of carbohydrate-lectin complexes using single/multi-wavelength anomalous dispersion phasing Bioorg. Med. Chem., 25, 2017
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3B4R
| Site-2 Protease from Methanocaldococcus jannaschii | 分子名称: | Putative zinc metalloprotease MJ0392, ZINC ION | 著者 | Jeffrey, P.D, Feng, L, Yan, H, Wu, Z, Yan, N, Wang, Z, Shi, Y. | 登録日 | 2007-10-24 | 公開日 | 2008-01-15 | 最終更新日 | 2024-02-21 | 実験手法 | X-RAY DIFFRACTION (3.3 Å) | 主引用文献 | Structure of a site-2 protease family intramembrane metalloprotease. Science, 318, 2007
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1KWH
| Structure Analysis AlgQ2, a Macromolecule(alginate)-Binding Periplasmic Protein of Sphingomonas sp. A1. | 分子名称: | CALCIUM ION, Macromolecule-Binding Periplasmic Protein | 著者 | Momma, K, Mikami, B, Mishima, Y, Hashimoto, W, Murata, K. | 登録日 | 2002-01-29 | 公開日 | 2002-02-13 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1 at 2.0A resolution. J.Mol.Biol., 316, 2002
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5H1R
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5H1Q
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5ZFU
| Structure of the ExbB/ExbD hexameric complex (ExbB6ExbD3TM) | 分子名称: | 22-mer peptide from Biopolymer transport protein ExbD, Biopolymer transport protein ExbB | 著者 | Yonekura, K, Yamashita, Y, Matsuoka, R, Maki-Yonekura, S. | 登録日 | 2018-03-07 | 公開日 | 2018-05-09 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (6.7 Å) | 主引用文献 | Hexameric and pentameric complexes of the ExbBD energizer in the Ton system. Elife, 7, 2018
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5ZFV
| Structure of the ExbB/ExbD pentameric complex (ExbB5ExbD1TM) | 分子名称: | 22-mer peptide from Biopolymer transport protein ExbD, Biopolymer transport protein ExbB | 著者 | Yonekura, K, Yamashita, Y, Matsuoka, R, Maki-Yonekura, S. | 登録日 | 2018-03-07 | 公開日 | 2018-05-09 | 実験手法 | ELECTRON MICROSCOPY (7.1 Å) | 主引用文献 | Hexameric and pentameric complexes of the ExbBD energizer in the Ton system. Elife, 7, 2018
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1J41
| Direct observation of photolysis-induced tertiary structural changes in human haemoglobin; Crystal structure of alpha(Ni)-beta(Fe) hemoglobin (laser photolysed) | 分子名称: | BUT-2-ENEDIAL, CARBON MONOXIDE, Hemoglobin alpha Chain, ... | 著者 | Adachi, S, Park, S.-Y, Tame, J.R.H, Shiro, Y, Shibayama, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2003-02-21 | 公開日 | 2003-07-22 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | 主引用文献 | Direct observation of photolysis-induced tertiary structural changes in hemoglobin Proc.Natl.Acad.Sci.USA, 100, 2003
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1ITY
| Solution structure of the DNA binding domain of human TRF1 | 分子名称: | TRF1 | 著者 | Nishikawa, T, Okamura, H, Nagadoi, A, Konig, P, Rhodes, D, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2002-02-15 | 公開日 | 2002-03-06 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of a telomeric DNA complex of human TRF1 Structure, 9, 2001
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1J05
| The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment | 分子名称: | GLYCEROL, PHOSPHATE ION, anti-CEA mAb T84.66, ... | 著者 | Kondo, H, Nishimura, Y, Shiroishi, M, Asano, R, Noro, N, Tsumoto, K, Kumagai, I. | 登録日 | 2002-11-01 | 公開日 | 2003-12-16 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment To be Published
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1V6R
| Solution Structure of Endothelin-1 with its C-terminal Folding | 分子名称: | Endothelin-1 | 著者 | Takashima, H, Mimura, N, Ohkubo, T, Yoshida, T, Tamaoki, H, Kobayashi, Y. | 登録日 | 2003-12-03 | 公開日 | 2004-03-16 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Distributed Computing and NMR Constraint-Based High-Resolution Structure
Determination: Applied for Bioactive Peptide Endothelin-1 To Determine C-Terminal
Folding J.Am.Chem.Soc., 126, 2004
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