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4YY2
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BU of 4yy2 by Molmil
Computationally designed left-handed alpha/alpha toroid with 3 repeats in space group P212121
分子名称: SODIUM ION, dTor_3x33L
著者Hallinan, J.P, Bradley, P, Stoddard, B.L.
登録日2015-03-23
公開日2015-12-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.854 Å)
主引用文献Rational design of alpha-helical tandem repeat proteins with closed architectures.
Nature, 528, 2015
4YXY
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BU of 4yxy by Molmil
Computationally designed left-handed alpha/alpha toroid with 9 repeats; two linked rings of 12 repeats each structure
分子名称: dTor_9x31L
著者Doyle, L, Stoddard, B.L, Bradley, P.
登録日2015-03-23
公開日2015-12-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.203 Å)
主引用文献Rational design of alpha-helical tandem repeat proteins with closed architectures.
Nature, 528, 2015
4YIT
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BU of 4yit by Molmil
Crystal Structure of LAGLIDADG Meganuclease I-AabMI Bound to Uncleaved DNA
分子名称: CALCIUM ION, DNA (25-MER), DNA (25MER), ...
著者Hallinan, J.P, Stoddard, B.L.
登録日2015-03-02
公開日2016-03-23
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.24 Å)
主引用文献Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity.
Structure, 24, 2016
4Z1Z
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BU of 4z1z by Molmil
Crystal Structure of Meganuclease I-SmaMI Bound to Uncleaveable DNA with a TTCT Central Four
分子名称: CALCIUM ION, DNA (28-MER), GLYCEROL, ...
著者Hallinan, J.P, Stoddard, B.L.
登録日2015-03-27
公開日2016-03-30
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity.
Structure, 24, 2016
4Z20
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BU of 4z20 by Molmil
Crystal Structure of Meganuclease I-SmaMI Bound to Uncleaveable DNA with a TTGT Central Four
分子名称: CALCIUM ION, DNA (26-MER), GLYCEROL, ...
著者Hallinan, J.P, Stoddard, B.L.
登録日2015-03-27
公開日2016-03-30
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity.
Structure, 24, 2016
4YXX
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BU of 4yxx by Molmil
Computationally designed left-handed alpha/alpha toroid with 6 repeats
分子名称: dTor_6x35L
著者Doyle, L, Bolduc, J, Stoddard, B.L, Bradley, P.
登録日2015-03-23
公開日2015-12-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Rational design of alpha-helical tandem repeat proteins with closed architectures.
Nature, 528, 2015
4YXZ
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BU of 4yxz by Molmil
Computationally designed left-handed alpha/alpha toroid with 9 repeats
分子名称: dTor_9x31L
著者Doyle, L, Stoddard, B.L, Bradley, P.
登録日2015-03-23
公開日2015-12-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.496 Å)
主引用文献Rational design of alpha-helical tandem repeat proteins with closed architectures.
Nature, 528, 2015
4YY5
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BU of 4yy5 by Molmil
Computationally designed left-handed alpha/alpha toroid with 3 repeats in space group P43212
分子名称: dTor_3x33L
著者Hallinan, J.P, Bradley, P, Stoddard, B.L.
登録日2015-03-23
公開日2015-12-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.78 Å)
主引用文献Rational design of alpha-helical tandem repeat proteins with closed architectures.
Nature, 528, 2015
8E0L
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BU of 8e0l by Molmil
Homotrimeric variant of tcTRP9, BGL06
分子名称: BGL06
著者Kennedy, M.A, Kibler, R, Stoddard, B.L.
登録日2022-08-09
公開日2023-04-12
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Homotrimeric variant of tcTRP9, BGL06
To Be Published
8E0M
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Homotrimeric variant of tcTRP9, BGL15
分子名称: BGL15
著者Kibler, R, Stoddard, B.L, Kennedy, M.A.
登録日2022-08-09
公開日2023-04-12
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Homotrimeric variant of tcTRP9, BGL15
To Be Published
8E0O
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Heterotrimeric variant of tcTRP9, hetBGL03-15-18
分子名称: hetBGL03-15-18a, hetBGL03-15-18b, hetBGL03-15-18c
著者Kibler, R, Stoddard, B.L, Kennedy, M.A.
登録日2022-08-09
公開日2023-04-12
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Heterotrimeric variant of tcTRP9, hetBGL03-15-18
To Be Published
8E12
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BU of 8e12 by Molmil
Homotrimeric variant of tcTRP9, BGL14
分子名称: BGL14
著者Kibler, R, Stoddard, B.L, Kennedy, M.A.
登録日2022-08-09
公開日2023-04-12
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Homotrimeric variant of tcTRP9, BGL14
To Be Published
8E0N
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BU of 8e0n by Molmil
Homotrimeric variant of tcTRP9, BGL18
分子名称: BGL18
著者Kibler, R, Stoddard, B.L, Kennedy, M.A.
登録日2022-08-09
公開日2023-04-12
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Homotrimeric variant of tcTRP9, BGL18
To Be Published
8EMC
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BU of 8emc by Molmil
CryoEM characterization of BrxL -- a unique AAA+ phage restriction Factor.
分子名称: Protease Lon-related BREX system protein BrxL
著者Shen, B.W, Stoddard, B.L.
登録日2022-09-27
公開日2023-02-01
最終更新日2023-05-17
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structure, substrate binding and activity of a unique AAA+ protein: the BrxL phage restriction factor.
Nucleic Acids Res., 51, 2023
8EMH
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BU of 8emh by Molmil
CryoEM characterization of a unique AAA+ BrxL phage restriction factor
分子名称: DNA (63-MER), DNA (64-MER), Protease Lon-related BREX system protein BrxL
著者Shen, B.W, Stoddard, B.L.
登録日2022-09-27
公開日2023-02-01
最終更新日2023-05-17
実験手法ELECTRON MICROSCOPY (3.63 Å)
主引用文献Structure, substrate binding and activity of a unique AAA+ protein: the BrxL phage restriction factor.
Nucleic Acids Res., 51, 2023
8EIL
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BU of 8eil by Molmil
C-Terminal Domain of BrxL from Acinetobacter BREX type I phage restriction system
分子名称: MALONIC ACID, Protease Lon-related BREX system protein BrxL, SUCCINIC ACID
著者Doyle, L.A, Stoddard, B.L, Kaiser, B.
登録日2022-09-15
公開日2023-02-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structure, substrate binding and activity of a unique AAA+ protein: the BrxL phage restriction factor.
Nucleic Acids Res., 51, 2023
8EPX
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BU of 8epx by Molmil
Type IIS Restriction Endonuclease PaqCI, DNA bound
分子名称: CALCIUM ION, DNA 1a, DNA 1b, ...
著者Kennedy, M.A, Stoddard, B.L.
登録日2022-10-06
公開日2023-03-22
最終更新日2023-06-07
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献Structures, activity and mechanism of the Type IIS restriction endonuclease PaqCI.
Nucleic Acids Res., 51, 2023
8EM1
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BU of 8em1 by Molmil
Type IIS Restriction Endonuclease PaqCI, DNA Unbound
分子名称: 1,2-ETHANEDIOL, PaqCI, DNA Unbound
著者Kennedy, M.A, Stoddard, B.L.
登録日2022-09-26
公開日2023-03-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structures, activity and mechanism of the Type IIS restriction endonuclease PaqCI.
Nucleic Acids Res., 51, 2023
3E54
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BU of 3e54 by Molmil
Archaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNA
分子名称: DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DTP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(*DTP*DTP*DGP*DGP*DCP*DTP*DAP*DCP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(P*DGP*DAP*DGP*DAP*DGP*DTP*DCP*DAP*DG)-3'), ...
著者Nomura, N, Nomura, Y, Sussman, D, Stoddard, B.L.
登録日2008-08-13
公開日2008-12-30
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Recognition of a common rDNA target site in archaea and eukarya by analogous LAGLIDADG and His-Cys box homing endonucleases
Nucleic Acids Res., 36, 2008
3E0L
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BU of 3e0l by Molmil
Computationally Designed Ammelide Deaminase
分子名称: Guanine deaminase, ZINC ION
著者Murphy, P.M, Bolduc, J.M, Gallaher, J.L, Stoddard, B.L, Baker, D.
登録日2008-07-31
公開日2009-03-03
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Alteration of enzyme specificity by computational loop remodeling and design.
Proc.Natl.Acad.Sci.USA, 106, 2009
3EH8
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BU of 3eh8 by Molmil
Crystal structure of Y2 I-AniI variant (F13Y/S111Y)/DNA complex with calcium
分子名称: 31-MER, CALCIUM ION, Intron-encoded DNA endonuclease I-AniI
著者Takeuchi, R, Stoddard, B.L.
登録日2008-09-11
公開日2009-01-13
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Optimization of in vivo activity of a bifunctional homing endonuclease and maturase reverses evolutionary degradation.
Nucleic Acids Res., 37, 2009
1IDC
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BU of 1idc by Molmil
ISOCITRATE DEHYDROGENASE FROM E.COLI (MUTANT K230M), STEADY-STATE INTERMEDIATE COMPLEX DETERMINED BY LAUE CRYSTALLOGRAPHY
分子名称: 2-OXALOSUCCINIC ACID, ISOCITRATE DEHYDROGENASE, MAGNESIUM ION
著者Bolduc, J.M, Dyer, D.H, Scott, W.G, Singer, P, Sweet, R.M, Koshland Junior, D.E, Stoddard, B.L.
登録日1995-01-18
公開日1996-03-08
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Mutagenesis and Laue structures of enzyme intermediates: isocitrate dehydrogenase.
Science, 268, 1995
1IDF
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BU of 1idf by Molmil
ISOCITRATE DEHYDROGENASE K230M MUTANT APO ENZYME
分子名称: ISOCITRATE DEHYDROGENASE
著者Bolduc, J.M, Dyer, D.H, Scott, W.G, Singer, P, Sweet, R.M, Koshland Junior, D.E, Stoddard, B.L.
登録日1995-01-18
公開日1996-03-08
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Mutagenesis and Laue structures of enzyme intermediates: isocitrate dehydrogenase.
Science, 268, 1995
1K70
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BU of 1k70 by Molmil
The Structure of Escherichia coli Cytosine Deaminase bound to 4-Hydroxy-3,4-Dihydro-1H-Pyrimidin-2-one
分子名称: 4-HYDROXY-3,4-DIHYDRO-1H-PYRIMIDIN-2-ONE, Cytosine Deaminase, FE (III) ION
著者Ireton, G.C, McDermott, G, Black, M.E, Stoddard, B.L.
登録日2001-10-17
公開日2002-02-06
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The structure of Escherichia coli cytosine deaminase.
J.Mol.Biol., 315, 2002
1K6W
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BU of 1k6w by Molmil
The Structure of Escherichia coli Cytosine Deaminase
分子名称: Cytosine Deaminase, FE (III) ION
著者Ireton, G.C, McDermott, G, Black, M.E, Stoddard, B.L.
登録日2001-10-17
公開日2002-02-06
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献The structure of Escherichia coli cytosine deaminase.
J.Mol.Biol., 315, 2002

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