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2RVQ
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Solution structure of the isolated histone H2A-H2B heterodimer
分子名称: Histone H2A type 1-B/E, Histone H2B type 1-J
著者Moriwaki, Y, Yamane, T, Ohtomo, H, Ikeguchi, M, Kurita, J, Sato, M, Nagadoi, A, Shimojo, H, Nishimura, Y.
登録日2016-03-28
公開日2016-05-25
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of the isolated histone H2A-H2B heterodimer
Sci Rep, 6, 2016
2RSO
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Solution structure of the chromodomain of Swi6
分子名称: Chromatin-associated protein swi6
著者Shimojo, H, Nishimura, Y.
登録日2012-04-18
公開日2012-08-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
Mol.Cell, 47, 2012
2RSN
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Solution structure of the chromodomain of Chp1 in complex with H3K9me3 peptide
分子名称: Chromo domain-containing protein 1, peptide from Histone H3
著者Shimojo, H, Nishimura, Y.
登録日2012-04-18
公開日2012-08-29
実験手法SOLUTION NMR
主引用文献Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
Mol.Cell, 47, 2012
1JF6
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Crystal structure of thermoactinomyces vulgaris r-47 alpha-amylase mutant F286Y
分子名称: ALPHA AMYLASE II, CALCIUM ION
著者Ohtaki, A, Kondo, S, Shimura, Y, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2001-06-20
公開日2002-05-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the Phe286-replaced mutant TVAIIs
CARBOHYDR.RES., 334, 2001
2SXL
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SEX-LETHAL RBD1, NMR, MINIMIZED AVERAGE STRUCTURE
分子名称: SEX-LETHAL PROTEIN
著者Inoue, M, Muto, Y, Sakamoto, H, Kigawa, T, Takio, K, Shimura, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1997-07-16
公開日1998-07-22
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献A characteristic arrangement of aromatic amino acid residues in the solution structure of the amino-terminal RNA-binding domain of Drosophila sex-lethal.
J.Mol.Biol., 272, 1997
1ETM
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STRUCTURAL CHARACTERISTICS FOR BIOLOGICAL ACTIVITY OF HEAT-STABLE ENTEROTOXIN PRODUCED BY ENTEROTOXIGENIC ESCHERICHIA COLI: X-RAY CRYSTALLOGRAPHY OF WEAKLY TOXIC AND NONTOXIC ANALOGS
分子名称: 5-BETA-MERCAPTOPROPIONATE HEAT-STABLE ENTEROTOXIN
著者Sato, T, Shimonishi, Y.
登録日1994-03-15
公開日1996-01-29
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (0.89 Å)
主引用文献Structural characteristics for biological activity of heat-stable enterotoxin produced by enterotoxigenic Escherichia coli: X-ray crystallography of weakly toxic and nontoxic analogs.
Biochemistry, 33, 1994
1ETL
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STRUCTURAL CHARACTERISTICS FOR BIOLOGICAL ACTIVITY OF HEAT-STABLE ENTEROTOXIN PRODUCED BY ENTEROTOXIGENIC ESCHERICHIA COLI: X-RAY CRYSTALLOGRAPHY OF WEAKLY TOXIC AND NONTOXIC ANALOGS
分子名称: 5-BETA-MERCAPTOPROPIONATE HEAT-STABLE ENTEROTOXIN
著者Sato, T, Shimonishi, Y.
登録日1994-03-15
公開日1996-01-29
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (0.89 Å)
主引用文献Structural characteristics for biological activity of heat-stable enterotoxin produced by enterotoxigenic Escherichia coli: X-ray crystallography of weakly toxic and nontoxic analogs.
Biochemistry, 33, 1994
1ETN
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MOLECULAR STRUCTURE OF THE TOXIC DOMAIN OF HEAT-STABLE ENTEROTOXIN PRODUCED BY A PATHOGENIC STRAIN OF ESCHERICHIA COLI
分子名称: 5-BETA-MERCAPTOPROPIONATE HEAT-STABLE ENTEROTOXIN
著者Sato, T, Shimonishi, Y.
登録日1994-03-15
公開日1996-01-29
最終更新日2017-11-29
実験手法X-RAY DIFFRACTION (0.89 Å)
主引用文献Molecular structure of the toxin domain of heat-stable enterotoxin produced by a pathogenic strain of Escherichia coli. A putative binding site for a binding protein on rat intestinal epithelial cell membranes.
J.Biol.Chem., 266, 1991
1D8K
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SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA
分子名称: GENERAL TRANSCRIPTION FACTOR TFIIE-BETA
著者Okuda, M, Watanabe, Y, Okamura, H, Hanaoka, F, Ohkuma, Y, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1999-10-25
公開日2000-04-26
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.
EMBO J., 19, 2000
2RVN
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Solution structure of the chromodomain of HP1a with the phosphorylated N-terminal tail complexed with H3K9me3 peptide
分子名称: 18-mer peptide of Histone H3, Chromobox protein homolog 5
著者Kawaguchi, A, Nishimura, Y.
登録日2015-12-18
公開日2016-03-16
実験手法SOLUTION NMR
主引用文献Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail
Sci Rep, 6, 2016
2RVL
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Solution structure of the chromodomain of HP1alpha with the N-terminal tail
分子名称: Chromobox protein homolog 5
著者Kawaguchi, A, Nishimura, Y.
登録日2015-12-18
公開日2016-03-16
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail
Sci Rep, 6, 2016
1D8J
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SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA
分子名称: GENERAL TRANSCRIPTION FACTOR TFIIE-BETA
著者Okuda, M, Watanabe, Y, Okamura, H, Hanaoka, F, Ohkuma, Y, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1999-10-25
公開日2000-04-26
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.
EMBO J., 19, 2000
1MBF
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
分子名称: MYB PROTO-ONCOGENE PROTEIN
著者Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-05-19
公開日1995-07-31
最終更新日2024-10-16
実験手法SOLUTION NMR
主引用文献Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBH
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2
分子名称: C-MYB
著者Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-05-19
公開日1995-09-15
最終更新日2024-06-05
実験手法SOLUTION NMR
主引用文献Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBJ
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
分子名称: MYB PROTO-ONCOGENE PROTEIN
著者Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-05-19
公開日1995-07-31
最終更新日2024-06-05
実験手法SOLUTION NMR
主引用文献Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBE
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
分子名称: MYB PROTO-ONCOGENE PROTEIN
著者Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-05-19
公開日1995-07-31
最終更新日2024-06-05
実験手法SOLUTION NMR
主引用文献Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBK
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
分子名称: MYB PROTO-ONCOGENE PROTEIN
著者Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-05-19
公開日1995-07-31
最終更新日2024-06-05
実験手法SOLUTION NMR
主引用文献Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBG
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2
分子名称: MYB PROTO-ONCOGENE PROTEIN
著者Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-05-19
公開日1995-07-31
最終更新日2024-06-05
実験手法SOLUTION NMR
主引用文献Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
2RNR
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Solution structure of the complex between TFIIE alpha C-terminal acidic domain and TFIIH p62 PH domain
分子名称: TFIIH basal transcription factor complex p62 subunit, Transcription initiation factor IIE subunit alpha
著者Okuda, M, Nishimura, Y.
登録日2008-01-31
公開日2008-04-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH
Embo J., 27, 2008
3J3Z
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Structure of MA28-7 neutralizing antibody Fab fragment from electron cryo-microscopy of enterovirus 71 complexed with a Fab fragment
分子名称: MA28-7 neutralizing antibody heavy chain, MA28-7 neutralizing antibody light chain
著者Lee, H, Cifuente, J.O, Ashley, R.E, Conway, J.F, Makhov, A.M, Tano, Y, Shimizu, H, Nishimura, Y, Hafenstein, S.
登録日2013-05-21
公開日2013-08-28
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (23.4 Å)
主引用文献A strain-specific epitope of enterovirus 71 identified by cryo-electron microscopy of the complex with fab from neutralizing antibody.
J.Virol., 87, 2013
2MLQ
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Human CCR2 Membrane-Proximal C-Terminal Region (PRO-C) in a frount bound form
分子名称: MCP-1 receptor
著者Esaki, K, Yoshinaga, S, Tsuji, T, Toda, E, Terashima, Y, Saitoh, T, Kohda, D, Kohno, T, Osawa, M, Ueda, T, Shimada, I, Matsushima, K, Terasawa, H.
登録日2014-03-04
公開日2014-10-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT.
Febs J., 281, 2014
2MLO
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Human CCR2 Membrane-Proximal C-Terminal Region (PRO-C) in a Membrane bound form
分子名称: MCP-1 receptor
著者Esaki, K, Yoshinaga, S, Tsuji, T, Toda, E, Terashima, Y, Saitoh, T, Kohda, D, Kohno, T, Osawa, M, Ueda, T, Shimada, I, Matsushima, K, Terasawa, H.
登録日2014-03-04
公開日2014-10-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT.
Febs J., 281, 2014
5H0Q
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Crystal structure of lipid binding protein Nakanori at 1.5A
分子名称: Lipid binding protein
著者Makino, A, Abe, M, Ishitsuka, R, Murate, M, Kishimoto, T, Sakai, S, Hullin-Matsuda, F, Shimada, Y, Inaba, T, Miyatake, H, Tanaka, H, Kurahashi, A, Pack, C.G, Kasai, R.S, Kubo, S, Schieber, N.L, Dohmae, N, Tochio, N, Hagiwara, K, Sasaki, Y, Aida, Y, Fujimori, F, Kigawa, T, Nishikori, K, Parton, R.G, Kusumi, A, Sako, Y, Anderluh, G, Yamashita, M, Kobayashi, T, Greimel, P, Kobayashi, T.
登録日2016-10-06
公開日2016-10-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.501 Å)
主引用文献A novel sphingomyelin/cholesterol domain-specific probe reveals the dynamics of the membrane domains during virus release and in Niemann-Pick type C
FASEB J., 31, 2017
1A0A
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PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX
分子名称: DNA (5'-D(*CP*TP*AP*GP*TP*CP*CP*CP*AP*CP*GP*TP*GP*TP*GP*AP*G )-3'), DNA (5'-D(*CP*TP*CP*AP*CP*AP*CP*GP*TP*GP*GP*GP*AP*CP*TP*AP*G )-3'), PROTEIN (PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4)
著者Shimizu, T, Toumoto, A, Ihara, K, Shimizu, M, Kyogoku, Y, Ogawa, N, Oshima, Y, Hakoshima, T.
登録日1997-11-27
公開日1998-03-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of PHO4 bHLH domain-DNA complex: flanking base recognition.
EMBO J., 16, 1997
2RVB
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Solution structure of the complex between XPC acidic domain and TFIIH p62 PH domain
分子名称: DNA repair protein complementing XP-C cells, General transcription factor IIH subunit 1
著者Okuda, M, Nishimura, Y.
登録日2015-07-01
公開日2015-09-09
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural Insight into the Mechanism of TFIIH Recognition by the Acidic String of the Nucleotide Excision Repair Factor XPC.
Structure, 23, 2015

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