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Structure of the Mango-III (A10U) aptamer bound to TO1-Biotin
分子名称:	1-methyl-4-{[3-(2-oxopropyl)-1,3-benzothiazol-3-ium-2-yl]methyl}quinolin-1-ium, POTASSIUM ION, RNA (35-MER), ...
著者	Trachman, R.J, Ferre-D'Amare, A.R.
登録日	2018-07-31
公開日	2019-04-17
最終更新日	2023-10-11
実験手法	X-RAY DIFFRACTION (2.9 Å)
主引用文献	Structure and functional reselection of the Mango-III fluorogenic RNA aptamer. Nat. Chem. Biol., 15, 2019

6E8S

Structure of the iMango-III aptamer bound to TO1-Biotin
分子名称:	4-[(3-{2-[(2-methoxyethyl)amino]-2-oxoethyl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium, MAGNESIUM ION, POTASSIUM ION, ...
著者	Trachman, R.J, Ferre-D'Amare, A.R.
登録日	2018-07-31
公開日	2019-04-17
最終更新日	2024-03-13
実験手法	X-RAY DIFFRACTION (2.35 Å)
主引用文献	Structure and functional reselection of the Mango-III fluorogenic RNA aptamer. Nat. Chem. Biol., 15, 2019

6E8U

Structure of the Mango-III (A10U) aptamer bound to TO1-Biotin
分子名称:	4-[(3-{2,16-dioxo-20-[(3aR,4R,6aS)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-6,9,12-trioxa-3,15-diazaicosan-1-yl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium, MAGNESIUM ION, POTASSIUM ION, ...
著者	Trachman, R.J, Ferre-D'Amare, A.R.
登録日	2018-07-31
公開日	2019-04-17
最終更新日	2023-10-11
実験手法	X-RAY DIFFRACTION (1.55 Å)
主引用文献	Structure and functional reselection of the Mango-III fluorogenic RNA aptamer. Nat. Chem. Biol., 15, 2019

6E80

Crystal structure of the Corn aptamer in unliganded state
分子名称:	ACETATE ION, IRIDIUM HEXAMMINE ION, IRIDIUM ION, ...
著者	Sjekloca, L, Ferre-D'Amare, A.R.
登録日	2018-07-27
公開日	2019-07-31
最終更新日	2023-10-11
実験手法	X-RAY DIFFRACTION (2.901 Å)
主引用文献	Binding between G Quadruplexes at the Homodimer Interface of the Corn RNA Aptamer Strongly Activates Thioflavin T Fluorescence. Cell Chem Biol, 26, 2019

6E84

Crystal structure of the Corn aptamer in complex with TO
分子名称:	1-methyl-4-[(Z)-(3-methyl-1,3-benzothiazol-2(3H)-ylidene)methyl]quinolin-1-ium, POTASSIUM ION, RNA (36-MER)
著者	Sjekloca, L, Ferre-D'Amare, A.R.
登録日	2018-07-27
公開日	2019-07-31
最終更新日	2023-10-11
実験手法	X-RAY DIFFRACTION (2.901 Å)
主引用文献	Binding between G Quadruplexes at the Homodimer Interface of the Corn RNA Aptamer Strongly Activates Thioflavin T Fluorescence. Cell Chem Biol, 26, 2019

6E82

Crystal structure of the Corn aptamer mutant A14U in complex with ThT
分子名称:	2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium, POTASSIUM ION, RNA (36-MER)
著者	Sjekloca, L, Ferre-D'Amare, A.R.
登録日	2018-07-27
公開日	2019-07-31
最終更新日	2023-10-11
実験手法	X-RAY DIFFRACTION (3.101 Å)
主引用文献	Binding between G Quadruplexes at the Homodimer Interface of the Corn RNA Aptamer Strongly Activates Thioflavin T Fluorescence. Cell Chem Biol, 26, 2019

6E81

Crystal structure of the Corn aptamer in complex with ThT
分子名称:	2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium, POTASSIUM ION, RNA (36-MER)
著者	Sjekloca, L, Ferre-D'Amare, A.R.
登録日	2018-07-27
公開日	2019-07-31
最終更新日	2023-10-11
実験手法	X-RAY DIFFRACTION (2.721 Å)
主引用文献	Binding between G Quadruplexes at the Homodimer Interface of the Corn RNA Aptamer Strongly Activates Thioflavin T Fluorescence. Cell Chem Biol, 26, 2019

2GCV

Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
分子名称:	2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, glmS ribozyme RNA, ...
著者	Klein, D.J, Ferre-D'Amare, A.R.
登録日	2006-03-14
公開日	2006-09-26
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (2.1 Å)
主引用文献	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2GCS

Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
分子名称:	MAGNESIUM ION, glmS ribozyme RNA, glmS ribozyme amino RNA inhibitor
著者	Klein, D.J, Ferre-D'Amare, A.R.
登録日	2006-03-14
公開日	2006-09-26
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (2.1 Å)
主引用文献	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2H0W

Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
分子名称:	2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, glmS ribozyme RNA, ...
著者	Klein, D.J, Ferre-D'Amare, A.R.
登録日	2006-05-15
公開日	2006-09-26
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (2.4 Å)
主引用文献	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2H0Z

Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate
分子名称:	6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, glmS ribozyme RNA, ...
著者	Klein, D.J, Ferre-D'Amare, A.R.
登録日	2006-05-15
公開日	2006-09-26
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (2.7 Å)
主引用文献	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2HO7

Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate
分子名称:	6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, glmS ribozyme RNA, ...
著者	Klein, D.J, Ferre-D'Amare, A.R.
登録日	2006-07-13
公開日	2006-09-26
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (2.9 Å)
主引用文献	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2HOK

Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, calcium ions
分子名称:	CALCIUM ION, THIAMINE DIPHOSPHATE, thi-box riboswitch
著者	Edwards, T.E, Ferre-D'Amare, A.R.
登録日	2006-07-14
公開日	2006-09-19
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (3.2 Å)
主引用文献	Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006

2H0X

Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
分子名称:	MAGNESIUM ION, glmS ribozyme RNA, glmS ribozyme amino RNA inhibitor
著者	Klein, D.J, Ferre-D'Amare, A.R.
登録日	2006-05-15
公開日	2006-09-26
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (2.3 Å)
主引用文献	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2H0S

Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
分子名称:	MAGNESIUM ION, glmS ribozyme RNA, glmS ribozyme deoxy RNA inhibitor
著者	Klein, D.J, Ferre-D'Amare, A.R.
登録日	2006-05-15
公開日	2006-09-26
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (2.35 Å)
主引用文献	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2HO6

Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
分子名称:	2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, glmS ribozyme RNA, ...
著者	Klein, D.J, Ferre-D'Amare, A.R.
登録日	2006-07-13
公開日	2006-09-26
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (2.8 Å)
主引用文献	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2HOM

Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate
分子名称:	CALCIUM ION, MAGNESIUM ION, THIAMIN PHOSPHATE, ...
著者	Edwards, T.E, Ferre-D'Amare, A.R.
登録日	2006-07-14
公開日	2006-09-19
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (2.89 Å)
主引用文献	Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006

2HOL

Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions
分子名称:	BARIUM ION, CALCIUM ION, MAGNESIUM ION, ...
著者	Edwards, T.E, Ferre-D'Amare, A.R.
登録日	2006-07-14
公開日	2006-09-19
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (2.9 Å)
主引用文献	Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006

2HOJ

Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions
分子名称:	MAGNESIUM ION, MANGANESE (II) ION, THIAMINE DIPHOSPHATE, ...
著者	Edwards, T.E, Ferre-D'Amare, A.R.
登録日	2006-07-14
公開日	2006-09-19
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (2.5 Å)
主引用文献	Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006

2HOP

Crystal structure of an E. coli thi-box riboswitch bound to pyrithiamine
分子名称:	1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-(2-HYDROXYETHYL)-2-METHYLPYRIDINIUM, CALCIUM ION, MAGNESIUM ION, ...
著者	Edwards, T.E, Ferre-D'Amare, A.R.
登録日	2006-07-14
公開日	2006-09-19
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (3.3 Å)
主引用文献	Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006

2HOO

Crystal structure of an E. coli thi-box riboswitch bound to benfotiamine
分子名称:	CALCIUM ION, S-BENZOYLTHIAMINE O-MONOPHOSPHATE, thi-box riboswitch
著者	Edwards, T.E, Ferre-D'Amare, A.R.
登録日	2006-07-14
公開日	2006-09-19
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (3 Å)
主引用文献	Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006

6PUP

1.9 A crystal structure of flavodoxin-like domain of Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN
分子名称:	FLAVIN MONONUCLEOTIDE, MANGANESE (II) ION, Wybutosine biosynthesis protein Tyw1
著者	Sjekloca, L, Ferre D'Amare, A.R.
登録日	2019-07-18
公開日	2020-07-29
最終更新日	2024-05-22
実験手法	X-RAY DIFFRACTION (1.89 Å)
主引用文献	Biochemical and structural characterization of the flavodoxin-like domain of the Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN. MicroPubl Biol, 2022, 2022

6OD9

Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser
分子名称:	AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE, CESIUM ION, MAGNESIUM ION, ...
著者	Jones, C.P, Tran, B, Ferre-D'Amare, A.R.
登録日	2019-03-26
公開日	2019-07-17
最終更新日	2023-10-11
実験手法	X-RAY DIFFRACTION (4.102 Å)
主引用文献	Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser. Acta Crystallogr.,Sect.F, 75, 2019

3OT0

Crystal structure of a DNA containing the rigid nitroxide spin-labeled nucleotide C-spin
分子名称:	Spin-labeled DNA
著者	Edwards, T.E.
登録日	2010-09-10
公開日	2011-01-19
最終更新日	2023-09-06
実験手法	X-RAY DIFFRACTION (1.7004 Å)
主引用文献	Crystal structure of a DNA containing the planar, phenoxazine-derived bi-functional spectroscopic probe C. Nucleic Acids Res., 10, 2011

5VHE

DHX36 in complex with the c-Myc G-quadruplex
分子名称:	DEAH (Asp-Glu-Ala-His) box polypeptide 36, DNA (5'-D(APGPGPGPTPGPGPGPTPAPGPGPGPTPGPGPGPTPTPTPTPTPTPT)-3'), POTASSIUM ION
著者	Chen, M, Ferre-D'Amare, A.
登録日	2017-04-13
公開日	2018-06-13
最終更新日	2023-10-04
実験手法	X-RAY DIFFRACTION (3.793 Å)
主引用文献	Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36. Nature, 558, 2018

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