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7U1X
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BU of 7u1x by Molmil
Structure of SPAC806.04c protein from fission yeast covalently bound to BeF3
分子名称: Damage-control phosphatase SPAC806.04c, PHOSPHATE ION, ZINC ION
著者Jacewicz, A, Sanchez, A.M, Shuman, S.
登録日2022-02-22
公開日2022-06-01
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Fission yeast Duf89 and Duf8901 are cobalt/nickel-dependent phosphatase-pyrophosphatases that act via a covalent aspartyl-phosphate intermediate.
J.Biol.Chem., 298, 2022
6E33
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Crystal Structure of Pho7-DNA complex
分子名称: DNA (5'-D(*GP*AP*TP*TP*TP*GP*AP*AP*TP*GP*TP*CP*CP*GP*AP*AP*GP*GP*AP*T)-3'), DNA (5'-D(*TP*CP*CP*TP*TP*CP*GP*GP*AP*CP*AP*TP*TP*CP*AP*AP*AP*TP*CP*A)-3'), Uncharacterized transcriptional regulatory protein C27B12.11c, ...
著者Garg, A, Goldgur, Y, Shuman, S.
登録日2018-07-13
公開日2018-10-24
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.705 Å)
主引用文献Distinctive structural basis for DNA recognition by the fission yeast Zn2Cys6 transcription factor Pho7 and its role in phosphate homeostasis.
Nucleic Acids Res., 46, 2018
6VT4
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Naegleria gruberi RNA ligase R149A mutant apo
分子名称: RNA Ligase
著者Unciuleac, M.C, Goldgur, Y, Shuman, S.
登録日2020-02-12
公開日2020-04-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020
6VTE
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Naegleria gruberi RNA Ligase K170M mutant with AMP and Mn
分子名称: ADENOSINE MONOPHOSPHATE, MANGANESE (II) ION, RNA ligase
著者Unciuleac, M.C, Goldgur, Y, Shuman, S.
登録日2020-02-12
公開日2020-04-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020
6VT6
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Naegleria gruberi RNA ligase K170A mutant with ATP and Mn
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, RNA Ligase
著者Unciuleac, M.C, Goldgur, Y, Shuman, S.
登録日2020-02-12
公開日2020-04-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.969 Å)
主引用文献Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020
6VTG
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Naegleria gruberi RNA ligase E227A mutant apo
分子名称: RNA ligase
著者Unciuleac, M.C, Goldgur, Y, Shuman, S.
登録日2020-02-12
公開日2020-04-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020
6VT9
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Naegleria gruberi RNA ligase E227A mutant with ATP and Mn
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, RNA ligase
著者Unciuleac, M.C, Goldgur, Y, Shuman, S.
登録日2020-02-12
公開日2020-04-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020
6VT3
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Naegleria gruberi RNA ligase K326A mutant apo
分子名称: RNA Ligase
著者Unciuleac, M.C, Goldgur, Y, Shuman, S.
登録日2020-02-12
公開日2020-04-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.844 Å)
主引用文献Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020
6VTD
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BU of 6vtd by Molmil
Naegleria gruberi RNA ligase R149A mutant with ATP and Mn
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, RNA Ligase
著者Unciuleac, M.C, Goldgur, Y, Shuman, S.
登録日2020-02-12
公開日2020-04-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020
6VT5
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Naegleria gruberi RNA ligase R4a K121A mutant apo
分子名称: RNA Ligase
著者Unciuleac, M.C, Goldgur, Y, Shuman, S.
登録日2020-02-12
公開日2020-04-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020
6VTF
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Naegleria gruberi RNA ligase with PPi
分子名称: PYROPHOSPHATE 2-, RNA ligase
著者Unciuleac, M.C, Goldgur, Y, Shuman, S.
登録日2020-02-12
公開日2020-04-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.71 Å)
主引用文献Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020
6VT0
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Naegleria gruberi RNA ligase K170A mutant apo
分子名称: RNA Ligase
著者Unciuleac, M.C, Goldgur, Y, Shuman, S.
登録日2020-02-12
公開日2020-04-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.002 Å)
主引用文献Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020
6VTB
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BU of 6vtb by Molmil
Naegleria gruberi RNA ligase K326A mutant with ATP and Mn
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, RNA ligase
著者Unciuleac, M.C, Goldgur, Y, Shuman, S.
登録日2020-02-12
公開日2020-04-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.547 Å)
主引用文献Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020
6VT1
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Naegleria gruberi RNA ligase D172A mutant apo
分子名称: ADENOSINE MONOPHOSPHATE, RNA Ligase
著者Unciuleac, M.C, Goldgur, Y, Shuman, S.
登録日2020-02-12
公開日2020-04-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.381 Å)
主引用文献Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020
4XBA
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BU of 4xba by Molmil
Hnt3
分子名称: Aprataxin-like protein, GLYCEROL, GUANOSINE, ...
著者Jacewicz, A, Chauleau, M, Shuman, S.
登録日2014-12-16
公開日2015-06-03
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献DNA3'pp5'G de-capping activity of aprataxin: effect of cap nucleoside analogs and structural basis for guanosine recognition.
Nucleic Acids Res., 43, 2015
6VT8
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Naegleria gruberi RNA ligase E312A mutant with AMP and Mn
分子名称: ADENOSINE MONOPHOSPHATE, MANGANESE (II) ION, RNA Ligase
著者Unciuleac, M.C, Goldgur, Y, Shuman, S.
登録日2020-02-12
公開日2020-04-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.998 Å)
主引用文献Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020
4YKL
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Hnt3 in complex with DNA and guanosine
分子名称: Aprataxin-like protein, CHLORIDE ION, DNA (5'-D(*GP*AP*AP*TP*CP*AP*TP*AP*AP*C)-3'), ...
著者Jacewicz, A, Chauleau, M, Shuman, S.
登録日2015-03-04
公開日2015-06-03
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献DNA3'pp5'G de-capping activity of aprataxin: effect of cap nucleoside analogs and structural basis for guanosine recognition.
Nucleic Acids Res., 43, 2015
8E1H
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Asp1 kinase in complex with ADP Mg 5-IP7
分子名称: (1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate, ADENOSINE-5'-DIPHOSPHATE, Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase, ...
著者Goldgur, Y, Shuman, S, Benjamin, B.
登録日2022-08-10
公開日2022-11-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of Fission Yeast Inositol Pyrophosphate Kinase Asp1 in Ligand-Free, Substrate-Bound, and Product-Bound States.
Mbio, 13, 2022
8E1I
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Asp1 kinase in complex with ATP Mg 5-IP7
分子名称: (1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate, ADENOSINE-5'-TRIPHOSPHATE, Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase, ...
著者Goldgur, Y, Shuman, S, Benjamin, B.
登録日2022-08-10
公開日2022-11-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structures of Fission Yeast Inositol Pyrophosphate Kinase Asp1 in Ligand-Free, Substrate-Bound, and Product-Bound States.
Mbio, 13, 2022
8E1S
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Asp1 kinase in complex with ADPNP Mn IP6
分子名称: INOSITOL HEXAKISPHOSPHATE, Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase, MANGANESE (II) ION, ...
著者Goldgur, Y, Shuman, S, Benjamin, B.
登録日2022-08-11
公開日2022-11-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Structures of Fission Yeast Inositol Pyrophosphate Kinase Asp1 in Ligand-Free, Substrate-Bound, and Product-Bound States.
Mbio, 13, 2022
8E1T
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Asp1 kinase in complex with ADPNP Mg IP7
分子名称: (1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate, Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase, MAGNESIUM ION, ...
著者Goldgur, Y, Shuman, S, Benjamin, B.
登録日2022-08-11
公開日2022-11-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Structures of Fission Yeast Inositol Pyrophosphate Kinase Asp1 in Ligand-Free, Substrate-Bound, and Product-Bound States.
Mbio, 13, 2022
8E1J
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Asp1 kinase in complex with 1,5-IP8
分子名称: (1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)], Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase
著者Goldgur, Y, Shuman, S, Benjamin, B.
登録日2022-08-10
公開日2022-11-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structures of Fission Yeast Inositol Pyrophosphate Kinase Asp1 in Ligand-Free, Substrate-Bound, and Product-Bound States.
Mbio, 13, 2022
8E1V
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Asp1 kinase in complex with ADPNP Mg IP6
分子名称: INOSITOL HEXAKISPHOSPHATE, Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase, MAGNESIUM ION, ...
著者Goldgur, Y, Shuman, S, Benjamin, B.
登録日2022-08-11
公開日2022-11-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of Fission Yeast Inositol Pyrophosphate Kinase Asp1 in Ligand-Free, Substrate-Bound, and Product-Bound States.
Mbio, 13, 2022
5HFZ
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Mmi1 YTH domain
分子名称: YTH domain-containing protein mmi1
著者Chatterjee, D, Goldgur, Y, Shuman, S.
登録日2016-01-07
公開日2016-02-10
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Transcription of lncRNA prt, clustered prt RNA sites for Mmi1 binding, and RNA polymerase II CTD phospho-sites govern the repression of pho1 gene expression under phosphate-replete conditions in fission yeast.
Rna, 22, 2016
5H8A
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Mmi1 YTH domain
分子名称: YTH domain-containing protein mmi1
著者Chatterjee, D, Goldgur, Y, Shuman, S.
登録日2015-12-23
公開日2016-01-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.751 Å)
主引用文献Transcription of lncRNA prt, clustered prt RNA sites for Mmi1 binding, and RNA polymerase II CTD phospho-sites govern the repression of pho1 gene expression under phosphate-replete conditions in fission yeast.
Rna, 22, 2016

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