4XPO
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![BU of 4xpo by Molmil](/molmil-images/mine/4xpo) | Crystal structure of a novel alpha-galactosidase from Pedobacter saltans | 分子名称: | 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-glucosidase | 著者 | Miyazaki, T, Ishizaki, Y, Ichikawa, M, Nishikawa, A, Tonozuka, T. | 登録日 | 2015-01-17 | 公開日 | 2015-05-20 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Structural and biochemical characterization of novel bacterial alpha-galactosidases belonging to glycoside hydrolase family 31 Biochem.J., 469, 2015
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4XPR
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![BU of 4xpr by Molmil](/molmil-images/mine/4xpr) | Crystal structure of the mutant D365A of Pedobacter saltans GH31 alpha-galactosidase | 分子名称: | 1,2-ETHANEDIOL, Alpha-glucosidase | 著者 | Miyazaki, T, Ishizaki, Y, Ichikawa, M, Nishikawa, A, Tonozuka, T. | 登録日 | 2015-01-17 | 公開日 | 2015-05-20 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.01 Å) | 主引用文献 | Structural and biochemical characterization of novel bacterial alpha-galactosidases belonging to glycoside hydrolase family 31 Biochem.J., 469, 2015
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4XPP
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![BU of 4xpp by Molmil](/molmil-images/mine/4xpp) | Crystal structure of Pedobacter saltans GH31 alpha-galactosidase complexed with D-galactose | 分子名称: | 1,2-ETHANEDIOL, Alpha-glucosidase, beta-D-galactopyranose | 著者 | Miyazaki, T, Ishizaki, Y, Ichikawa, M, Nishikawa, A, Tonozuka, T. | 登録日 | 2015-01-17 | 公開日 | 2015-05-20 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structural and biochemical characterization of novel bacterial alpha-galactosidases belonging to glycoside hydrolase family 31 Biochem.J., 469, 2015
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4XPQ
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![BU of 4xpq by Molmil](/molmil-images/mine/4xpq) | Crystal structure of Pedobacter saltans GH31 alpha-galactosidase complexed with L-fucose | 分子名称: | 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-glucosidase, ... | 著者 | Miyazaki, T, Ishizaki, Y, Ichikawa, M, Nishikawa, A, Tonozuka, T. | 登録日 | 2015-01-17 | 公開日 | 2015-05-20 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Structural and biochemical characterization of novel bacterial alpha-galactosidases belonging to glycoside hydrolase family 31 Biochem.J., 469, 2015
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1JIB
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![BU of 1jib by Molmil](/molmil-images/mine/1jib) | Complex of Alpha-amylase II (TVA II) from Thermoactinomyces vulgaris R-47 with Maltotetraose Based on a Crystal Soaked with Maltohexaose. | 分子名称: | NEOPULLULANASE, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | 著者 | Yokota, T, Tonozuka, T, Shimura, Y, Ichikawa, K, Kamitori, S, Sakano, Y. | 登録日 | 2001-07-02 | 公開日 | 2001-07-25 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (3.3 Å) | 主引用文献 | Structures of Thermoactinomyces vulgaris R-47 alpha-amylase II complexed with substrate analogues. Biosci.Biotechnol.Biochem., 65, 2001
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4XPS
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![BU of 4xps by Molmil](/molmil-images/mine/4xps) | Crystal structure of the mutant D365A of Pedobacter saltans GH31 alpha-galactosidase complexed with p-nitrophenyl-alpha-galactopyranoside | 分子名称: | 1,2-ETHANEDIOL, Alpha-glucosidase, P-NITROPHENOL, ... | 著者 | Miyazaki, T, Ishizaki, Y, Ichikawa, M, Nishikawa, A, Tonozuka, T. | 登録日 | 2015-01-17 | 公開日 | 2015-05-20 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Structural and biochemical characterization of novel bacterial alpha-galactosidases belonging to glycoside hydrolase family 31 Biochem.J., 469, 2015
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1JF6
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![BU of 1jf6 by Molmil](/molmil-images/mine/1jf6) | Crystal structure of thermoactinomyces vulgaris r-47 alpha-amylase mutant F286Y | 分子名称: | ALPHA AMYLASE II, CALCIUM ION | 著者 | Ohtaki, A, Kondo, S, Shimura, Y, Tonozuka, T, Sakano, Y, Kamitori, S. | 登録日 | 2001-06-20 | 公開日 | 2002-05-22 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the Phe286-replaced mutant TVAIIs CARBOHYDR.RES., 334, 2001
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1JI2
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![BU of 1ji2 by Molmil](/molmil-images/mine/1ji2) | Improved X-ray Structure of Thermoactinomyces vulgaris R-47 alpha-Amylase 2 | 分子名称: | ALPHA-AMYLASE II, CALCIUM ION | 著者 | Kamitori, S, Abe, A, Ohtaki, A, Kaji, A, Tonozuka, T, Sakano, Y. | 登録日 | 2001-06-28 | 公開日 | 2002-06-05 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution. J.Mol.Biol., 318, 2002
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1JF5
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![BU of 1jf5 by Molmil](/molmil-images/mine/1jf5) | CRYSTAL STRUCTURE OF THERMOACTINOMYCES VULGARIS R-47 ALPHA-AMYLASE 2 MUTANT F286A | 分子名称: | ALPHA AMYLASE II, CALCIUM ION | 著者 | Ohtaki, A, Kondo, S, Shimura, Y, Tonozuka, T, Sakano, Y, Kamitori, S. | 登録日 | 2001-06-20 | 公開日 | 2002-05-22 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the Phe286-replaced mutant TVAIIs CARBOHYDR.RES., 334, 2001
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2LCF
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![BU of 2lcf by Molmil](/molmil-images/mine/2lcf) | Solution structure of GppNHp-bound H-RasT35S mutant protein | 分子名称: | GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | 著者 | Araki, M, Shima, F, Yoshikawa, Y, Muraoka, S, Ijiri, Y, Nagahara, Y, Shirono, T, Kataoka, T, Tamura, A. | 登録日 | 2011-04-28 | 公開日 | 2011-09-28 | 最終更新日 | 2024-05-01 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of the state 1 conformer of GTP-bound H-Ras protein and distinct dynamic properties between the state 1 and state 2 conformers. J.Biol.Chem., 286, 2011
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2D0H
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![BU of 2d0h by Molmil](/molmil-images/mine/2d0h) | Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P2, a pullulan model oligosaccharide | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... | 著者 | Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | 登録日 | 2005-08-02 | 公開日 | 2006-07-11 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages Febs J., 272, 2005
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2D0F
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![BU of 2d0f by Molmil](/molmil-images/mine/2d0f) | Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N complexed with P2, a pullulan model oligosaccharide | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ... | 著者 | Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | 登録日 | 2005-08-02 | 公開日 | 2006-07-11 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (2.08 Å) | 主引用文献 | Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages Febs J., 272, 2005
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2D2O
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![BU of 2d2o by Molmil](/molmil-images/mine/2d2o) | Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft | 分子名称: | CALCIUM ION, Neopullulanase 2, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | 著者 | Ohtaki, A, Mizuno, M, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | 登録日 | 2005-09-13 | 公開日 | 2006-08-29 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft Carbohydr.Res., 341, 2006
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2D0G
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![BU of 2d0g by Molmil](/molmil-images/mine/2d0g) | Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P5, a pullulan model oligosaccharide | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose, ... | 著者 | Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | 登録日 | 2005-08-02 | 公開日 | 2006-07-11 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages Febs J., 272, 2005
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5XH8
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![BU of 5xh8 by Molmil](/molmil-images/mine/5xh8) | |
5XH9
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![BU of 5xh9 by Molmil](/molmil-images/mine/5xh9) | Aspergillus kawachii beta-fructofuranosidase | 分子名称: | Extracellular invertase, SODIUM ION | 著者 | Nagaya, M, Tonozuka, T. | 登録日 | 2017-04-19 | 公開日 | 2017-07-19 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Crystal structure of a beta-fructofuranosidase with high transfructosylation activity from Aspergillus kawachii Biosci. Biotechnol. Biochem., 81, 2017
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2FL1
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![BU of 2fl1 by Molmil](/molmil-images/mine/2fl1) | Crystal structure of red fluorescent protein from Zoanthus, zRFP574, at 2.4A resolution | 分子名称: | Red fluorescent protein zoanRFP, SULFATE ION | 著者 | Pletnev, V, Pletneva, N, Martynov, V, Tikhonova, T, Popov, B, Pletnev, S. | 登録日 | 2006-01-05 | 公開日 | 2007-01-09 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Structure of a red fluorescent protein from Zoanthus, zRFP574, reveals a novel chromophore Acta Crystallogr.,Sect.D, 62, 2006
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1JL8
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![BU of 1jl8 by Molmil](/molmil-images/mine/1jl8) | Complex of alpha-amylase II (TVA II) from Thermoactinomyces vulgaris R-47 with beta-cyclodextrin based on a co-crystallization with methyl beta-cyclodextrin | 分子名称: | ALPHA-AMYLASE II, Cycloheptakis-(1-4)-(alpha-D-glucopyranose) | 著者 | Yokota, T, Tonozuka, T, Shimura, Y, Ichikawa, K, Kamitori, S, Sakano, Y. | 登録日 | 2001-07-16 | 公開日 | 2001-08-01 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | Structures of Thermoactinomyces vulgaris R-47 alpha-amylase II complexed with substrate analogues. Biosci.Biotechnol.Biochem., 65, 2001
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1V94
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![BU of 1v94 by Molmil](/molmil-images/mine/1v94) | Crystal structure of isocitrate dehydrogenase from Aeropyrum pernix | 分子名称: | isocitrate dehydrogenase | 著者 | Jeong, J.-J, Sonoda, T, Fushinobu, S, Shoun, H, Wakagi, T. | 登録日 | 2004-01-20 | 公開日 | 2005-01-25 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.28 Å) | 主引用文献 | Crystal structure of isocitrate dehydrogenase from Aeropyrum pernix Proteins, 55, 2004
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5W4K
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![BU of 5w4k by Molmil](/molmil-images/mine/5w4k) | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | 分子名称: | 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... | 著者 | Metelev, M, Osterman, I.A, Ghilarov, D, Khabibullina, N.F, Yakimov, A, Shabalin, K, Utkina, I, Travin, D.Y, Komarova, E.S, Serebryakova, M, Artamonova, T, Khodorkovskii, M, Konevega, A.L, Sergiev, P.V, Severinov, K, Polikanov, Y.S. | 登録日 | 2017-06-12 | 公開日 | 2017-08-30 | 最終更新日 | 2019-12-04 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Klebsazolicin inhibits 70S ribosome by obstructing the peptide exit tunnel. Nat. Chem. Biol., 13, 2017
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2ICR
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![BU of 2icr by Molmil](/molmil-images/mine/2icr) | Red fluorescent protein zRFP574 from Zoanthus sp. | 分子名称: | Red fluorescent protein zoanRFP, SULFATE ION | 著者 | Pletnev, S, Pletneva, N, Tikhonova, T, Pletnev, V. | 登録日 | 2006-09-13 | 公開日 | 2007-10-02 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.51 Å) | 主引用文献 | Refined crystal structures of red and green fluorescent proteins from the button polyp Zoanthus. Acta Crystallogr.,Sect.D, 63, 2007
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1IZJ
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![BU of 1izj by Molmil](/molmil-images/mine/1izj) | Thermoactinomyces vulgaris R-47 alpha-amylase 1 mutant enzyme f313a | 分子名称: | CALCIUM ION, amylase | 著者 | Ohtaki, A, Iguchi, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S. | 登録日 | 2002-10-03 | 公開日 | 2003-07-29 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Mutual conversion of substrate specificities of Thermoactinomyces vulgaris R-47 alpha-amylases TVAI and TVAII by site-directed mutagenesis CARBOHYDR.RES., 338, 2003
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1IZK
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![BU of 1izk by Molmil](/molmil-images/mine/1izk) | Thermoactinomyces vulgaris R-47 alpha-amylase 1 mutant enzyme w398v | 分子名称: | CALCIUM ION, amylase | 著者 | Ohtaki, A, Iguchi, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S. | 登録日 | 2002-10-03 | 公開日 | 2003-07-29 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Mutual conversion of substrate specificities of Thermoactinomyces vulgaris R-47 alpha-amylases TVAI and TVAII by site-directed mutagenesis CARBOHYDR.RES., 338, 2003
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1JI1
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![BU of 1ji1 by Molmil](/molmil-images/mine/1ji1) | Crystal Structure Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase 1 | 分子名称: | ALPHA-AMYLASE I, CALCIUM ION | 著者 | Kamitori, S, Abe, A, Ohtaki, A, Kaji, A, Tonozuka, T, Sakano, Y. | 登録日 | 2001-06-28 | 公開日 | 2002-06-05 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution. J.Mol.Biol., 318, 2002
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1WZK
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![BU of 1wzk by Molmil](/molmil-images/mine/1wzk) | Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) mutatnt D465N | 分子名称: | Alpha-amylase II, CALCIUM ION | 著者 | Mizuno, M, Ichikawa, K, Tonozuka, T, Ohtaki, A, Shimura, Y, Kamitori, S, Nishikawa, A, Sakano, Y. | 登録日 | 2005-03-06 | 公開日 | 2005-03-22 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Mutagenesis and Structural Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase II (TVA II) To be Published
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