1WKJ
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1WUR
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![BU of 1wur by Molmil](/molmil-images/mine/1wur) | Structure of GTP cyclohydrolase I Complexed with 8-oxo-dGTP | 分子名称: | 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, GTP cyclohydrolase I, ZINC ION | 著者 | Tanaka, Y, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-12-08 | 公開日 | 2005-07-19 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.82 Å) | 主引用文献 | Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative J.Biochem.(Tokyo), 138, 2005
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1V8N
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![BU of 1v8n by Molmil](/molmil-images/mine/1v8n) | Crystal structure analysis of the ADP-ribose pyrophosphatase complexed with Zn | 分子名称: | ADP-ribose pyrophosphatase, ZINC ION | 著者 | Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-01-12 | 公開日 | 2004-10-19 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.74 Å) | 主引用文献 | Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
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1V8V
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![BU of 1v8v by Molmil](/molmil-images/mine/1v8v) | Crystal structure analysis of the ADP-ribose pyrophosphatase of E86Q mutant, complexed with ADP-ribose and Mg | 分子名称: | ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose pyrophosphatase, MAGNESIUM ION | 著者 | Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-01-15 | 公開日 | 2004-10-19 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.97 Å) | 主引用文献 | Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
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1V8T
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![BU of 1v8t by Molmil](/molmil-images/mine/1v8t) | Crystal Structure analysis of the ADP-ribose pyrophosphatase complexed with ribose-5'-phosphate and Zn | 分子名称: | ADP-ribose pyrophosphatase, RIBOSE-5-PHOSPHATE, ZINC ION | 著者 | Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-01-14 | 公開日 | 2004-10-19 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
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1V8U
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![BU of 1v8u by Molmil](/molmil-images/mine/1v8u) | Crystal structure analysis of the ADP-ribose pyrophosphatase of E82Q mutant with SO4 and Mg | 分子名称: | ADP-ribose pyrophosphatase, MAGNESIUM ION, SULFATE ION | 著者 | Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-01-15 | 公開日 | 2004-10-19 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
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1V8M
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![BU of 1v8m by Molmil](/molmil-images/mine/1v8m) | Crystal structure analysis of ADP-ribose pyrophosphatase complexed with ADP-ribose and Gd | 分子名称: | ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose pyrophosphatase, GADOLINIUM ATOM | 著者 | Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-01-12 | 公開日 | 2004-10-19 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
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1V8S
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![BU of 1v8s by Molmil](/molmil-images/mine/1v8s) | Crystal structure analusis of the ADP-ribose pyrophosphatase complexed with AMP and Mg | 分子名称: | ADENOSINE MONOPHOSPHATE, ADP-ribose pyrophosphatase, MAGNESIUM ION | 著者 | Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-01-14 | 公開日 | 2004-10-19 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
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1V8I
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![BU of 1v8i by Molmil](/molmil-images/mine/1v8i) | Crystal Structure Analysis of the ADP-ribose pyrophosphatase | 分子名称: | ADP-ribose pyrophosphatase | 著者 | Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-01-09 | 公開日 | 2004-10-19 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.76 Å) | 主引用文献 | Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
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1V8W
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![BU of 1v8w by Molmil](/molmil-images/mine/1v8w) | Crystal structure analysis of the ADP-ribose pyrophosphatase of E82Q mutant, complexed with SO4 and Zn | 分子名称: | ADP-ribose pyrophosphatase, SULFATE ION, ZINC ION | 著者 | Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-01-15 | 公開日 | 2004-10-19 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.66 Å) | 主引用文献 | Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
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1VCD
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![BU of 1vcd by Molmil](/molmil-images/mine/1vcd) | Crystal Structure of a T.thermophilus HB8 Ap6A hydrolase Ndx1 | 分子名称: | GLYCEROL, Ndx1, SULFATE ION | 著者 | Iwai, T, Nakagawa, N, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-03-05 | 公開日 | 2005-04-26 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Crystal Structure of Nudix Protein Ndx1 from Thermus thermophilus HB8 in binary complex with diadenosine hexaphosphate To be Published
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1VC9
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![BU of 1vc9 by Molmil](/molmil-images/mine/1vc9) | Crystal Structure of a T.thermophilus HB8 Ap6A hydrolase E50Q mutant-Mg2+-ATP complex | 分子名称: | ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Ndx1 | 著者 | Iwai, T, Nakagawa, N, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-03-05 | 公開日 | 2005-04-26 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Crystal Structure of Nudix Protein Ndx1 from Thermus thermophilus HB8 in binary complex with diadenosine hexaphosphate To be Published
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2ZXP
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![BU of 2zxp by Molmil](/molmil-images/mine/2zxp) | Crystal structure of RecJ in complex with Mn2+ from Thermus thermophilus HB8 | 分子名称: | MANGANESE (II) ION, Single-stranded DNA specific exonuclease RecJ | 著者 | Wakamatsu, T, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S. | 登録日 | 2009-01-05 | 公開日 | 2010-01-05 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structure of RecJ exonuclease defines its specificity for single-stranded DNA J.Biol.Chem., 285, 2010
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3A0J
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![BU of 3a0j by Molmil](/molmil-images/mine/3a0j) | Crystal structure of cold shock protein 1 from Thermus thermophilus HB8 | 分子名称: | Cold shock protein | 著者 | Miyazaki, T, Nakagawa, N, Kuramitsu, S, Masui, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2009-03-19 | 公開日 | 2010-03-23 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | The Biological Action of Cold Shock Protein 1 from Thermus thermophilus HB8 To be Published
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3AAM
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![BU of 3aam by Molmil](/molmil-images/mine/3aam) | Crystal structure of endonuclease IV from Thermus thermophilus HB8 | 分子名称: | Endonuclease IV, MANGANESE (II) ION, PHOSPHATE ION | 著者 | Asano, R, Ishikawa, H, Nakane, S, Baba, S, Nakagawa, N, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2009-11-20 | 公開日 | 2010-12-01 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.58 Å) | 主引用文献 | An additional C-terminal loop in endonuclease IV, an apurinic/apyrimidinic endonuclease, controls binding affinity to DNA Acta Crystallogr.,Sect.D, 67, 2011
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2ZXR
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![BU of 2zxr by Molmil](/molmil-images/mine/2zxr) | Crystal structure of RecJ in complex with Mg2+ from Thermus thermophilus HB8 | 分子名称: | MAGNESIUM ION, Single-stranded DNA specific exonuclease RecJ | 著者 | Wakamatsu, T, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S. | 登録日 | 2009-01-05 | 公開日 | 2010-01-05 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.15 Å) | 主引用文献 | Structure of RecJ exonuclease defines its specificity for single-stranded DNA J.Biol.Chem., 285, 2010
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3A4Y
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![BU of 3a4y by Molmil](/molmil-images/mine/3a4y) | Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8 | 分子名称: | CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ... | 著者 | Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2009-07-22 | 公開日 | 2009-08-04 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8 to be published
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3AF6
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![BU of 3af6 by Molmil](/molmil-images/mine/3af6) | The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii complexed with RNA-analog | 分子名称: | 5'-R(*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU))-3', Putative uncharacterized protein PH1404, SULFATE ION, ... | 著者 | Nishida, Y, Ishikawa, H, Nakagawa, N, Masui, R, Kuramitsu, S. | 登録日 | 2010-02-24 | 公開日 | 2010-04-21 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii Proteins, 78, 2010
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3AKD
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3AAL
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![BU of 3aal by Molmil](/molmil-images/mine/3aal) | Crystal Structure of endonuclease IV from Geobacillus kaustophilus | 分子名称: | CACODYLATE ION, FE (III) ION, Probable endonuclease 4, ... | 著者 | Asano, R, Ishikawa, H, Nakane, S, Nakagawa, N, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2009-11-20 | 公開日 | 2010-12-01 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | An additional C-terminal loop in endonuclease IV, an apurinic/apyrimidinic endonuclease, controls binding affinity to DNA Acta Crystallogr.,Sect.D, 67, 2011
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3ADR
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![BU of 3adr by Molmil](/molmil-images/mine/3adr) | The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii | 分子名称: | 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Putative uncharacterized protein ST1585, ... | 著者 | Shimada, A, Ishikawa, H, Nakagawa, N, Kuramitsu, S, Masui, R. | 登録日 | 2010-01-28 | 公開日 | 2010-04-21 | 最終更新日 | 2017-10-11 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii Proteins, 78, 2010
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3AX6
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![BU of 3ax6 by Molmil](/molmil-images/mine/3ax6) | Crystal structure of N5-carboxyaminoimidazole ribonucleotide synthetase from Thermotoga maritima | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, Phosphoribosylaminoimidazole carboxylase, ATPase subunit | 著者 | Miyazawa, R, Kanagawa, M, Baba, S, Nakagawa, N, Ebihara, A, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2011-03-30 | 公開日 | 2012-04-25 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Crystal structures of N5-carboxyaminoimidazole ribonucleotide synthetase, PurK, from thermophilic bacteria To be Published
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3AKC
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![BU of 3akc by Molmil](/molmil-images/mine/3akc) | Crystal structure of CMP kinase in complex with CDP and ADP from Thermus thermophilus HB8 | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, CYTIDINE-5'-DIPHOSPHATE, Cytidylate kinase, ... | 著者 | Mega, R, Nakagawa, N, Kuramitsu, S, Masui, R. | 登録日 | 2010-07-12 | 公開日 | 2011-07-06 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | The crystal structure of the tertiary complex of CMP kinase with a phosphoryl group acceptor and a donor from Thermus thermophilus HB8 To be Published
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3AV3
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![BU of 3av3 by Molmil](/molmil-images/mine/3av3) | Crystal structure of glycinamide ribonucleotide transformylase 1 from Geobacillus kaustophilus | 分子名称: | MAGNESIUM ION, Phosphoribosylglycinamide formyltransferase | 著者 | Kanagawa, M, Baba, S, Nakagawa, N, Ebihara, A, Kuramitsu, S, Yokoyama, S, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2011-02-18 | 公開日 | 2012-03-07 | 最終更新日 | 2014-01-15 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Structures and reaction mechanisms of the two related enzymes, PurN and PurU. J.Biochem., 154, 2013
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3ASZ
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![BU of 3asz by Molmil](/molmil-images/mine/3asz) | CMP-complex structure of uridine kinase from Thermus thermophilus HB8 | 分子名称: | CYTIDINE-5'-MONOPHOSPHATE, Uridine kinase | 著者 | Tomoike, F, Nakagawa, N, Kuramitsu, S, Masui, R. | 登録日 | 2010-12-22 | 公開日 | 2011-06-01 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | A Single Amino Acid Limits the Substrate Specificity of Thermus thermophilus Uridine-Cytidine Kinase to Cytidine Biochemistry, 50, 2011
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