Crystal structure of endonuclease IV from Thermus thermophilus HB8

Summary for 3AAM

DescriptorEndonuclease IV, MANGANESE (II) ION, PHOSPHATE ION, ... (4 entities in total)
Functional Keywordsdna repair, base excision repair, ber, tim barrel, endonuclease, hydrolase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
Biological sourceThermus thermophilus
Total number of polymer chains1
Total molecular weight29275.2
Asano, R.,Ishikawa, H.,Nakane, S.,Baba, S.,Nakagawa, N.,Kuramitsu, S.,Masui, R.,RIKEN Structural Genomics/Proteomics Initiative (RSGI) (deposition date: 2009-11-20, release date: 2010-12-01, Last modification date: 2017-10-11)
Primary citation
Asano, R.,Ishikawa, H.,Nakane, S.,Nakagawa, N.,Kuramitsu, S.,Masui, R.
An additional C-terminal loop in endonuclease IV, an apurinic/apyrimidinic endonuclease, controls binding affinity to DNA
Acta Crystallogr.,Sect.D, 67:149-155, 2011
PubMed: 21358045 (PDB entries with the same primary citation)
DOI: 10.1107/S0907444910052479
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.220701.5%3.7%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution