Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4DSJ
DownloadVisualize
BU of 4dsj by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, dGTP and Calcium
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA, ...
著者Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
登録日2012-02-19
公開日2013-03-27
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.86 Å)
主引用文献Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
4DSL
DownloadVisualize
BU of 4dsl by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA and Calcium
分子名称: DNA (5'-D(*G*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), DNA (5'-D(*TP*CP*AP*CP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA polymerase, ...
著者Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
登録日2012-02-19
公開日2013-03-27
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
1LO8
DownloadVisualize
BU of 1lo8 by Molmil
X-ray crystal structure of 4-hydroxybenzoyl CoA thioesterase complexed with 4-hydroxybenzyl CoA
分子名称: 4-HYDROXYBENZYL COENZYME A, 4-hydroxybenzoyl-CoA Thioesterase
著者Thoden, J.B, Holden, H.M, Zhuang, Z, Dunaway-Mariano, D.
登録日2002-05-06
公開日2002-05-17
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献X-ray crystallographic analyses of inhibitor and substrate complexes of wild-type and mutant 4-hydroxybenzoyl-CoA thioesterase.
J.Biol.Chem., 277, 2002
1LO7
DownloadVisualize
BU of 1lo7 by Molmil
X-ray structure of 4-Hydroxybenzoyl CoA Thioesterase complexed with 4-hydroxyphenacyl CoA
分子名称: 1,2-ETHANEDIOL, 4-HYDROXYPHENACYL COENZYME A, 4-hydroxybenzoyl-CoA Thioesterase
著者Thoden, J.B, Holden, H.M, Zhuang, Z, Dunaway-Mariano, D.
登録日2002-05-06
公開日2002-05-13
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献X-ray crystallographic analyses of inhibitor and substrate complexes of wild-type and mutant 4-hydroxybenzoyl-CoA thioesterase.
J.Biol.Chem., 277, 2002
2O8W
DownloadVisualize
BU of 2o8w by Molmil
Crystal Structure and Binding Epitopes of Urokinase-type Plasminogen Activator (C122A/N145Q/S195A) in complex with Inhibitors
分子名称: 1-phenylguanidine, SULFATE ION, TETRAETHYLENE GLYCOL, ...
著者Zhao, G, Yuan, C, Jiang, L, Huang, Z, Huang, M.
登録日2006-12-12
公開日2007-12-25
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Crystal Structure and Binding Epitopes of Urokinase-type Plasminogen Activator (C122A/N145Q/S195A) in complex with Inhibitors
To be Published
2O8U
DownloadVisualize
BU of 2o8u by Molmil
Crystal Structure and Binding Epitopes of Urokinase-type Plasminogen Activator (C122A/N145Q/S195A) in complex with Inhibitors
分子名称: BENZAMIDINE, DI(HYDROXYETHYL)ETHER, SULFATE ION, ...
著者Zhao, G, Yuan, C, Jiang, L, Huang, Z, Huang, M.
登録日2006-12-12
公開日2007-12-25
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure and Binding Epitopes of Urokinase-type Plasminogen Activator (C122A/N145Q/S195A) in complex with Inhibitors
To be Published
5KK5
DownloadVisualize
BU of 5kk5 by Molmil
AsCpf1(E993A)-crRNA-DNA ternary complex
分子名称: CRISPR-associated endonuclease Cpf1, DNA (28-MER), DNA (8-mer), ...
著者Gao, P, Yang, H, Rajashankar, K.R, Huang, Z, Patel, D.J.
登録日2016-06-21
公開日2016-08-10
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.289 Å)
主引用文献Type V CRISPR-Cas Cpf1 endonuclease employs a unique mechanism for crRNA-mediated target DNA recognition.
Cell Res., 26, 2016
4F4N
DownloadVisualize
BU of 4f4n by Molmil
Crystal structure of 2-se-thymidine derivatized dna 8mer
分子名称: 5'-D(*GP*TP*GP*(US3)P*AP*CP*AP*C)-3'
著者Zhang, W, Sheng, J, Huang, Z.
登録日2012-05-10
公開日2012-06-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Crystal structure of 2-se-thymidine derivatized dna 8mer
TO BE PUBLISHED
4DSI
DownloadVisualize
BU of 4dsi by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, Se-dGTP and Calcium
分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, CALCIUM ION, DNA, ...
著者Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
登録日2012-02-19
公開日2013-03-27
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
4FP6
DownloadVisualize
BU of 4fp6 by Molmil
DNA octamer d(gtggccac) with 2'-se modification
分子名称: CHLORIDE ION, DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3')
著者Zhang, W, Sheng, J, Huang, Z.
登録日2012-06-21
公開日2012-08-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献DNA octamer d(gtggccac) with 2'-se modification
TO BE PUBLISHED
2NWN
DownloadVisualize
BU of 2nwn by Molmil
New Pharmacophore for Serine Protease Inhibition Revealed by Crystal Structure of Human Urokinase-type Plasminogen Activator Complexed with a Cyclic Peptidyl Inhibitor, upain-1
分子名称: Plasminogen activator, urokinase, upain-1
著者Zhao, G, Yuan, C, Wind, T, Andreasen, P.A, Huang, Z, Huang, M, Structural Genomics Consortium (SGC)
登録日2006-11-16
公開日2007-10-16
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structural basis of specificity of a peptidyl urokinase inhibitor, upain-1
J.Struct.Biol., 160, 2007
1LO9
DownloadVisualize
BU of 1lo9 by Molmil
X-ray crystal structure of 4-hydroxybenzoyl CoA thioesterase mutant D17N complexed with 4-hydroxybenzoyl CoA
分子名称: 4-HYDROXYBENZOYL COENZYME A, 4-hydroxybenzoyl-CoA Thioesterase
著者Thoden, J.B, Holden, H.M, Zhuang, Z, Dunaway-Mariano, D.
登録日2002-05-06
公開日2002-05-13
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献X-ray crystallographic analyses of inhibitor and substrate complexes of wild-type and mutant 4-hydroxybenzoyl-CoA thioesterase.
J.Biol.Chem., 277, 2002
4G3I
DownloadVisualize
BU of 4g3i by Molmil
Crystal structure of Dpo4 in complex with DNA duplex
分子名称: CALCIUM ION, DNA, DNA polymerase IV
著者Yan, Y.Y, Gan, J.H, Huang, Z.
登録日2012-07-14
公開日2013-08-07
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of Dpo4 in complex with DNA duplex
To be Published
5TGP
DownloadVisualize
BU of 5tgp by Molmil
DNA 8mer containing two 2SeT modifications
分子名称: DNA/RNA (5'-R(*G)-D(P*(2ST))-R(P*G)-D(P*(2ST))-R(P*AP*CP*AP*C)-3')
著者Zhang, W, Huang, Z.
登録日2016-09-28
公開日2017-10-18
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献DNA 8mer containing two 2SeT modifications
To Be Published
5TSL
DownloadVisualize
BU of 5tsl by Molmil
Molecular Dynamics Flexible Fitting Model of Coxsackievirus A16 empty Procapsid VP3 Subunit
分子名称: coxsackievirus A16
著者Fan, C, Cong, Y, Ye, X, Huang, Z.
登録日2016-10-29
公開日2017-02-01
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (6.5 Å)
主引用文献Structural alteration and surface modifi cation of coxsackievirus A16 capsids by beta-propiolactone treatment
J.VIROL., 2017
5TSK
DownloadVisualize
BU of 5tsk by Molmil
Molecular Dynamics Flexible Fitting Model of Coxsackievirus A16 empty Procapsid VP1 Subunit
分子名称: coxsackievirus A16 empty procapsid VP1 subunit
著者Fan, C, Cong, Y, Ye, X, Huang, Z.
登録日2016-10-29
公開日2017-02-01
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (6.5 Å)
主引用文献Structural alteration and surface modifi cation of coxsackievirus A16 capsids by beta-propiolactone treatment
J.VIROL., 2017
6VQV
DownloadVisualize
BU of 6vqv by Molmil
Type I-F CRISPR-Csy complex with its inhibitor AcrF9
分子名称: AcrF9, CRISPR-associated endonuclease Cas6/Csy4, CRISPR-associated protein Csy1, ...
著者Zhang, K, Li, S, Pintilie, G, Zhu, Y, Huang, Z, Chiu, W.
登録日2020-02-06
公開日2020-03-11
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.57 Å)
主引用文献Inhibition mechanisms of AcrF9, AcrF8, and AcrF6 against type I-F CRISPR-Cas complex revealed by cryo-EM.
Proc.Natl.Acad.Sci.USA, 117, 2020
6VQX
DownloadVisualize
BU of 6vqx by Molmil
Type I-F CRISPR-Csy complex with its inhibitor AcrF6
分子名称: AcrF6, CRISPR-associated endonuclease Cas6/Csy4, CRISPR-associated protein Csy1, ...
著者Zhang, K, Li, S, Pintilie, G, Zhu, Y, Huang, Z, Chiu, W.
登録日2020-02-06
公開日2020-03-11
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献Inhibition mechanisms of AcrF9, AcrF8, and AcrF6 against type I-F CRISPR-Cas complex revealed by cryo-EM.
Proc.Natl.Acad.Sci.USA, 117, 2020
2I2Z
DownloadVisualize
BU of 2i2z by Molmil
Human serum albumin complexed with myristate and aspirin
分子名称: 2-HYDROXYBENZOIC ACID, MYRISTIC ACID, Serum albumin
著者Yang, F, Bian, C, Zhu, L, Zhao, G, Huang, Z, Huang, M.
登録日2006-08-17
公開日2006-12-12
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Effect of human serum albumin on drug metabolism: Structural evidence of esterase activity of human serum albumin
J.Struct.Biol., 157, 2007
6VQW
DownloadVisualize
BU of 6vqw by Molmil
Type I-F CRISPR-Csy complex with its inhibitor AcrF8
分子名称: AcrF8, CRISPR-associated endonuclease Cas6/Csy4, CRISPR-associated protein Csy1, ...
著者Zhang, K, Li, S, Pintilie, G, Zhu, Y, Huang, Z, Chiu, W.
登録日2020-02-06
公開日2020-03-11
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.42 Å)
主引用文献Inhibition mechanisms of AcrF9, AcrF8, and AcrF6 against type I-F CRISPR-Cas complex revealed by cryo-EM.
Proc.Natl.Acad.Sci.USA, 117, 2020
2I30
DownloadVisualize
BU of 2i30 by Molmil
Human serum albumin complexed with myristate and salicylic acid
分子名称: 2-HYDROXYBENZOIC ACID, MYRISTIC ACID, Serum albumin
著者Yang, F, Bian, C, Zhu, L, Zhao, G, Huang, Z, Huang, M.
登録日2006-08-17
公開日2006-12-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Effect of human serum albumin on drug metabolism: Structural evidence of esterase activity of human serum albumin
J.Struct.Biol., 157, 2007
3IFI
DownloadVisualize
BU of 3ifi by Molmil
2'-SeMe-dG modified octamer DNA
分子名称: DNA (5'-D(*GP*TP*(XUG)P*TP*AP*CP*AP*C)-3')
著者Sheng, J, Gan, J, Salon, J, Huang, Z.
登録日2009-07-24
公開日2009-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Synthesis and crystal structure of 2'-se-modified guanosine containing DNA.
J.Org.Chem., 75, 2010
3IKI
DownloadVisualize
BU of 3iki by Molmil
5-SMe-dU containing DNA octamer
分子名称: 5'-D(*GP*(UMS)P*GP*(US2)P*AP*CP*AP*C)-3', MAGNESIUM ION
著者Sheng, J, Hassan, A.E.A, Zhang, W, Gan, J, Huang, Z.
登録日2009-08-05
公開日2010-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone.
Nucleic Acids Res., 40, 2012
3IJN
DownloadVisualize
BU of 3ijn by Molmil
5-SeMe-Cytidine modified DNA 8mer
分子名称: 5'-D(*GP*(UMS)P*GP*TP*AP*(5SE)P*AP*C)-3'
著者Sheng, J, Zhang, W, Hassan, A.E.A, Gan, J, Huang, Z.
登録日2009-08-04
公開日2009-10-06
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献5-SeMe-Cytidine modified DNA 8mer
TO BE PUBLISHED
3JAU
DownloadVisualize
BU of 3jau by Molmil
The cryoEM map of EV71 mature viron in complex with the Fab fragment of antibody D5
分子名称: Capsid protein VP1, Heavy chain of Fab fragment variable region of antibody D5, Light chain of Fab fragment variable region of antibody D5
著者Fan, C, Ye, X.H, Ku, Z.Q, Zuo, T, Kong, L.L, Zhang, C, Shi, J.P, Liu, Q.W, Chen, T, Zhang, Y.Y, Jiang, W, Zhang, L.Q, Huang, Z, Cong, Y.
登録日2015-06-24
公開日2016-02-10
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (4.8 Å)
主引用文献Structural Basis for Recognition of Human Enterovirus 71 by a Bivalent Broadly Neutralizing Monoclonal Antibody
Plos Pathog., 12, 2016

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon