4Y61
| Crystal structure of the complex between Slitrk2 LRR1 and PTP delta Ig1-Fn1 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Receptor-type tyrosine-protein phosphatase delta, SLIT and NTRK-like protein 2 | 著者 | Yamgata, A, Sato, Y, Goto-Ito, S, Uemura, T, Maeda, A, Shiroshima, T, Yoshida, T, Fukai, S. | 登録日 | 2015-02-12 | 公開日 | 2015-06-03 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3.358 Å) | 主引用文献 | Structure of Slitrk2-PTP delta complex reveals mechanisms for splicing-dependent trans-synaptic adhesion. Sci Rep, 5, 2015
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2YX0
| Crystal structure of P. horikoshii TYW1 | 分子名称: | radical sam enzyme | 著者 | Goto-Ito, S, Ishii, R, Ito, T, Shibata, R, Fusatomi, E, Sekine, S, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-04-23 | 公開日 | 2007-10-30 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (2.21 Å) | 主引用文献 | Structure of an archaeal TYW1, the enzyme catalyzing the second step of wye-base biosynthesis Acta Crystallogr.,Sect.D, 63, 2007
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3AIC
| Crystal Structure of Glucansucrase from Streptococcus mutans | 分子名称: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, CALCIUM ION, ... | 著者 | Ito, K, Ito, S, Shimamura, T, Iwata, S. | 登録日 | 2010-05-12 | 公開日 | 2011-03-23 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (3.11 Å) | 主引用文献 | Crystal structure of glucansucrase from the dental caries pathogen Streptococcus mutans. J.Mol.Biol., 408, 2011
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3AIB
| Crystal Structure of Glucansucrase | 分子名称: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Glucosyltransferase-SI, ... | 著者 | Ito, K, Ito, S, Shimamura, T, Iwata, S. | 登録日 | 2010-05-12 | 公開日 | 2011-03-23 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (3.09 Å) | 主引用文献 | Crystal structure of glucansucrase from the dental caries pathogen Streptococcus mutans. J.Mol.Biol., 408, 2011
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3AIE
| Crystal Structure of glucansucrase from Streptococcus mutans | 分子名称: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Glucosyltransferase-SI | 著者 | Ito, K, Ito, S, Shimamura, T, Iwata, S. | 登録日 | 2010-05-12 | 公開日 | 2011-03-23 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Crystal structure of glucansucrase from the dental caries pathogen Streptococcus mutans. J.Mol.Biol., 408, 2011
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1UD6
| Crystal structure of AmyK38 with potassium ion | 分子名称: | POTASSIUM ION, amylase | 著者 | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | 登録日 | 2003-04-28 | 公開日 | 2003-07-22 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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1UD3
| Crystal structure of AmyK38 N289H mutant | 分子名称: | SODIUM ION, amylase | 著者 | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | 登録日 | 2003-04-28 | 公開日 | 2003-07-22 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.15 Å) | 主引用文献 | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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1UD8
| Crystal structure of AmyK38 with lithium ion | 分子名称: | SODIUM ION, amylase | 著者 | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | 登録日 | 2003-04-28 | 公開日 | 2003-07-22 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.88 Å) | 主引用文献 | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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1UD5
| Crystal structure of AmyK38 with rubidium ion | 分子名称: | RUBIDIUM ION, SODIUM ION, amylase | 著者 | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | 登録日 | 2003-04-28 | 公開日 | 2003-07-22 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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1UD4
| Crystal structure of calcium free alpha amylase from Bacillus sp. strain KSM-K38 (AmyK38, in calcium containing solution) | 分子名称: | SODIUM ION, amylase | 著者 | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | 登録日 | 2003-04-28 | 公開日 | 2003-07-22 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.15 Å) | 主引用文献 | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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1UD2
| Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) | 分子名称: | GLYCEROL, SODIUM ION, amylase | 著者 | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | 登録日 | 2003-04-28 | 公開日 | 2003-07-22 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.13 Å) | 主引用文献 | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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5XWS
| Crystal structure of SALM5 LRR-Ig | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Leucine-rich repeat and fibronectin type-III domain-containing protein 5 | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2017-06-30 | 公開日 | 2018-06-06 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (3.084 Å) | 主引用文献 | Structural basis of trans-synaptic interactions between PTP delta and SALMs for inducing synapse formation. Nat Commun, 9, 2018
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5XWT
| Crystal structure of PTPdelta Ig1-Fn1 in complex with SALM5 LRR-Ig | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2017-06-30 | 公開日 | 2018-06-06 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (4.178 Å) | 主引用文献 | Structural basis of trans-synaptic interactions between PTP delta and SALMs for inducing synapse formation. Nat Commun, 9, 2018
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6IXF
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6IXE
| Crystal structure of SeMet apo SH3BP5 (I41) | 分子名称: | SH3 domain-binding protein 5, SUCCINIC ACID | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2018-12-10 | 公開日 | 2019-03-20 | 最終更新日 | 2019-03-27 | 実験手法 | X-RAY DIFFRACTION (3.35 Å) | 主引用文献 | Structural basis of guanine nucleotide exchange for Rab11 by SH3BP5. Life Sci Alliance, 2, 2019
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5Y1F
| Monomeric L-threonine 3-dehydrogenase from metagenome database (NAD+ bound form) | 分子名称: | NAD dependent epimerase/dehydratase family, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 著者 | Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S. | 登録日 | 2017-07-20 | 公開日 | 2017-11-15 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.25 Å) | 主引用文献 | Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase. Biochemistry, 56, 2017
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5Y1G
| Monomeric L-threonine 3-dehydrogenase from metagenome database (AKB and NADH bound form) | 分子名称: | 2-AMINO-3-KETOBUTYRIC ACID, NAD dependent epimerase/dehydratase family, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 著者 | Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S. | 登録日 | 2017-07-20 | 公開日 | 2017-11-15 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.35 Å) | 主引用文献 | Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase. Biochemistry, 56, 2017
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6IXV
| Crystal structure of SH3BP5-Rab11a | 分子名称: | PHOSPHATE ION, Ras-related protein Rab-11A, SH3 domain-binding protein 5 | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2018-12-12 | 公開日 | 2019-03-20 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (3.8 Å) | 主引用文献 | Structural basis of guanine nucleotide exchange for Rab11 by SH3BP5. Life Sci Alliance, 2, 2019
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5Y1E
| monomeric L-threonine 3-dehydrogenase from metagenome database (L-Ser and NAD+ bound form) | 分子名称: | NAD dependent epimerase/dehydratase family, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SERINE | 著者 | Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S. | 登録日 | 2017-07-20 | 公開日 | 2017-11-15 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase. Biochemistry, 56, 2017
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6IY9
| Crystal structure of aminoglycoside 7"-phoshotransferase-Ia (APH(7")-Ia/HYG) from Streptomyces hygroscopicus complexed with hygromycin B | 分子名称: | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CITRATE ANION, HYGROMYCIN B VARIANT, ... | 著者 | Takenoya, M, Shimamura, T, Yamanaka, R, Adachi, Y, Ito, S, Sasaki, Y, Nakamura, A, Yajima, S. | 登録日 | 2018-12-14 | 公開日 | 2019-09-11 | 最終更新日 | 2019-11-20 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Structural basis for the substrate recognition of aminoglycoside 7''-phosphotransferase-Ia from Streptomyces hygroscopicus. Acta Crystallogr.,Sect.F, 75, 2019
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6J6X
| Crystal structure of apo GGTaseIII | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, Geranylgeranyl transferase type-2 subunit beta, MAGNESIUM ION, ... | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2019-01-16 | 公開日 | 2020-01-22 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.962 Å) | 主引用文献 | Crystal structure of apo GGTaseIII To Be Published
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6J74
| Complex of GGTaseIII and full-length Ykt6 | 分子名称: | Geranylgeranyl transferase type-2 subunit beta, PHOSPHATE ION, Protein prenyltransferase alpha subunit repeat-containing protein 1, ... | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2019-01-16 | 公開日 | 2020-01-22 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3.212 Å) | 主引用文献 | Complex of GGTaseIII and full-length Ykt6 To Be Published
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6J7F
| Complex of GGTaseIII, farnesyl-Ykt6 (C-terminal methylated), and GGPP | 分子名称: | DIPHOSPHATE, FARNESYL, GERAN-8-YL GERAN, ... | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2019-01-18 | 公開日 | 2020-01-22 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.883 Å) | 主引用文献 | Complex of GGTaseIII, farnesyl-Ykt6 (C-terminal methylated), and GGPP To Be Published
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5Y1D
| Monomeric L-threonine 3-dehydrogenase from metagenome database (apo form) | 分子名称: | NAD dependent epimerase/dehydratase family | 著者 | Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S. | 登録日 | 2017-07-20 | 公開日 | 2017-11-15 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase. Biochemistry, 56, 2017
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5Z09
| ST0452(Y97N)-UTP binding form | 分子名称: | Dual sugar-1-phosphate nucleotidylyltransferase, URIDINE 5'-TRIPHOSPHATE | 著者 | Honda, Y, Nakano, S, Ito, S, Dadashipour, M, Zhang, Z, Kawarabayasi, Y. | 登録日 | 2017-12-19 | 公開日 | 2018-10-31 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.91 Å) | 主引用文献 | Improvement of ST0452N-Acetylglucosamine-1-Phosphate Uridyltransferase Activity by the Cooperative Effect of Two Single Mutations Identified through Structure-Based Protein Engineering Appl. Environ. Microbiol., 84, 2018
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