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Crystal structure of the Archaeoglobus fulgidus oligosaccharyltransferase (O29867_ARCFU) complex with Zn and sulfate
分子名称:	SULFATE ION, Transmembrane oligosaccharyl transferase, ZINC ION
著者	Matsumoto, S, Shimada, A, Kohda, D.
登録日	2013-05-03
公開日	2013-10-30
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (2.501 Å)
主引用文献	Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation Proc.Natl.Acad.Sci.USA, 110, 2013

3WAK

Crystal structure of the Archaeoglobus fulgidus oligosaccharyltransferase (O29867_ARCFU) in the apo form
分子名称:	MANGANESE (II) ION, Transmembrane oligosaccharyl transferase
著者	Matsumoto, S, Shimada, A, Kohda, D.
登録日	2013-05-03
公開日	2013-10-30
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (3.413 Å)
主引用文献	Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation Proc.Natl.Acad.Sci.USA, 110, 2013

3WAI

Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (AfAglB-L, O29867_ARCFU) from Archaeoglobus fulgidus as a MBP fusion
分子名称:	Maltose-binding periplasmic protein, Transmembrane oligosaccharyl transferase
著者	Matsumoto, S, Shimada, A, Kohda, D.
登録日	2013-05-03
公開日	2013-07-17
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (1.897 Å)
主引用文献	Crystal structure of the C-terminal globular domain of the third paralog of the Archaeoglobus fulgidus oligosaccharyltransferases Bmc Struct.Biol., 13, 2013

6IKN

Crystal structure of the GAS7 F-BAR domain
分子名称:	Growth arrest-specific protein 7
著者	Hanawa-Suetsugu, K, Itoh, Y, Kohda, D, Shimada, A, Suetsugu, S.
登録日	2018-10-16
公開日	2019-10-16
最終更新日	2024-10-16
実験手法	X-RAY DIFFRACTION (3 Å)
主引用文献	Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7. Nat Commun, 10, 2019

6K7F

Crystal structure of MBPholo-Tim21 fusion protein with a 17-residue helical linker
分子名称:	Maltose/maltodextrin-binding periplasmic protein,Mitochondrial import inner membrane translocase subunit TIM21, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者	Bala, S, Shimada, A, Kohda, D.
登録日	2019-06-07
公開日	2019-09-18
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (1.8 Å)
主引用文献	Crystal contact-free conformation of an intrinsically flexible loop in protein crystal: Tim21 as the case study. Biochim Biophys Acta Gen Subj, 1864, 2020

6K7D

Crystal structure of MBPapo-Tim21 fusion protein with a 16-residue helical linker
分子名称:	Maltose/maltodextrin-binding periplasmic protein,Mitochondrial import inner membrane translocase subunit TIM21
著者	Bala, S, Shimada, A, Kohda, D.
登録日	2019-06-07
公開日	2019-09-18
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (2 Å)
主引用文献	Crystal contact-free conformation of an intrinsically flexible loop in protein crystal: Tim21 as the case study. Biochim Biophys Acta Gen Subj, 1864, 2020

6K7E

Crystal structure of MBPapo-Tim21 fusion protein with a 17-residue helical linker
分子名称:	Maltose/maltodextrin-binding periplasmic protein,Mitochondrial import inner membrane translocase subunit TIM21
著者	Bala, S, Shimada, A, Kohda, D.
登録日	2019-06-07
公開日	2019-09-18
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (1.534 Å)
主引用文献	Crystal contact-free conformation of an intrinsically flexible loop in protein crystal: Tim21 as the case study. Biochim Biophys Acta Gen Subj, 1864, 2020

6IKO

Crystal structure of mouse GAS7cb
分子名称:	Growth arrest-specific protein 7
著者	Hanawa-Suetsugu, K, Itoh, Y, Kohda, D, Shimada, A, Suetsugu, S.
登録日	2018-10-16
公開日	2019-10-16
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (3.756 Å)
主引用文献	Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7. Nat Commun, 10, 2019

6K8Q

Solution structure of the intermembrane space domain of the mitochondrial import protein Tim21 from S. cerevisiae
分子名称:	Mitochondrial import inner membrane translocase subunit TIM21
著者	Bala, S, Shinya, S, Srivastava, A, Shimada, A, Kobayashi, N, Kojima, C, Tama, F, Miyashita, O, Kohda, D.
登録日	2019-06-13
公開日	2019-09-11
最終更新日	2024-05-15
実験手法	SOLUTION NMR
主引用文献	Crystal contact-free conformation of an intrinsically flexible loop in protein crystal: Tim21 as the case study. Biochim Biophys Acta Gen Subj, 1864, 2020

2Z1K

Crystal Structure of Ttha1563 from Thermus thermophilus HB8
分子名称:	(Neo)pullulanase, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), PHOSPHATE ION, ...
著者	Niwa, H, Shimada, A, Matsunaga, E, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2007-05-08
公開日	2008-05-13
最終更新日	2024-10-23
実験手法	X-RAY DIFFRACTION (2.3 Å)
主引用文献	Crystal Structure of Ttha1563 from Thermus thermophilus HB8 To be Published

6J8M

Low-dose structure of bovine heart cytochrome c oxidase in the fully oxidized state determined using 30 keV X-ray
分子名称:	(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者	Ueno, G, Shimada, A, Yamashita, E, Hasegawa, K, Kumasaka, T, Shinzawa-Itoh, K, Yoshikawa, S, Tsukihara, T, Yamamoto, M.
登録日	2019-01-20
公開日	2019-06-26
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (1.9 Å)
主引用文献	Low-dose X-ray structure analysis of cytochrome c oxidase utilizing high-energy X-rays. J.Synchrotron Radiat., 26, 2019

6TCH

Binary complex of 14-3-3 sigma and a high-affinity non-canonical 9-mer peptide binder
分子名称:	14-3-3 protein sigma, CHLORIDE ION, DLY-NVA-PPN-KCJ-SEP-PPN-B3S-BAL-PPN-LYS, ...
著者	Somsen, B.A, Ottmann, C.
登録日	2019-11-06
公開日	2020-07-01
最終更新日	2024-01-24
実験手法	X-RAY DIFFRACTION (1.801 Å)
主引用文献	Ultra-large chemical libraries for the discovery of high-affinity peptide binders. Nat Commun, 11, 2020

5GMY

Crystal structure of the Archaeoglobus fulgidus oligosaccharyltransferase (O29867_ARCFU) tethered with an acceptor peptide containing the NVT sequon via a disulfide bond
分子名称:	MAGNESIUM ION, Transmembrane oligosaccharyl transferase, putative, ...
著者	Matsumoto, S, Kohda, D.
登録日	2016-07-18
公開日	2017-02-01
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (3.5 Å)
主引用文献	Tethering an N-Glycosylation Sequon-Containing Peptide Creates a Catalytically Competent Oligosaccharyltransferase Complex Biochemistry, 56, 2017

1A8H

METHIONYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS
分子名称:	METHIONYL-TRNA SYNTHETASE, ZINC ION
著者	Sugiura, I, Nureki, O, Ugaji, Y, Kuwabara, S, Lober, B, Giege, R, Moras, D, Yokoyama, S, Konno, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	1998-03-26
公開日	1999-05-04
最終更新日	2024-02-07
実験手法	X-RAY DIFFRACTION (2 Å)
主引用文献	The 2.0 A crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules. Structure, 8, 2000

3W9F

Crystal structure of the ankyrin repeat domain of chicken TRPV4 in complex with IP3
分子名称:	D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, Vanilloid receptor-related osmotically activated channel protein
著者	Itoh, Y, Hamada-nakahara, S, Suetsugu, S.
登録日	2013-04-04
公開日	2014-04-09
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (1.9 Å)
主引用文献	TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P2 Nat Commun, 5, 2014

3W9G

Crystal structure of the ankyrin repeat domain of chicken TRPV4
分子名称:	Vanilloid receptor-related osmotically activated channel protein
著者	Itoh, Y, Hamada-nakahara, S, Suetsugu, S.
登録日	2013-04-04
公開日	2014-04-09
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (2 Å)
主引用文献	TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P2 Nat Commun, 5, 2014

5AZ7

Crystal structure of MBP-Tom20 fusion protein with a 4-residue spacer in the connector helix
分子名称:	Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者	Matsuoka, R, Kohda, D.
登録日	2015-09-27
公開日	2016-01-13
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (1.96 Å)
主引用文献	Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules. Protein Sci., 25, 2016

5AZA

Crystal structure of MBP-sAglB fusion protein with a 20-residue spacer in the connector helix
分子名称:	CALCIUM ION, Maltose-binding periplasmic protein,Oligosaccharyl transferase stt3 subunit related protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者	Matsuoka, R, Kohda, D.
登録日	2015-09-27
公開日	2016-01-13
最終更新日	2024-10-23
実験手法	X-RAY DIFFRACTION (2.08 Å)
主引用文献	Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules. Protein Sci., 25, 2016

5AZ6

Crystal structure of MBP-Tom20 fusion protein with a 2-residue spacer in the connector helix
分子名称:	Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者	Matsuoka, R, Kohda, D.
登録日	2015-09-27
公開日	2016-01-13
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (2.56 Å)
主引用文献	Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules. Protein Sci., 25, 2016

5AZ8

Crystal structure of MBP-Tom20 fusion protein tethered with ALDH presequence via a disulfide bond
分子名称:	ACETYLAMINO-ACETIC ACID, Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
著者	Matsuoka, R, Kohda, D.
登録日	2015-09-27
公開日	2016-01-13
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (1.7 Å)
主引用文献	Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules. Protein Sci., 25, 2016

5AZ9

Crystal structure of (5-residue deleted)MBP-Tom20 fusion protein tethered with ALDH presequence via a disulfide bond
分子名称:	Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog
著者	Matsuoka, R, Kohda, D.
登録日	2015-09-27
公開日	2016-01-13
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (1.82 Å)
主引用文献	Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules. Protein Sci., 25, 2016

1Y64

Bni1p Formin Homology 2 Domain complexed with ATP-actin
分子名称:	ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ...
著者	Otomo, T, Tomchick, D.R, Otomo, C, Panchal, S.C, Machius, M, Rosen, M.K.
登録日	2004-12-03
公開日	2005-01-18
最終更新日	2025-03-26
実験手法	X-RAY DIFFRACTION (3.05 Å)
主引用文献	Structural basis of actin filament nucleation and processive capping by a formin homology 2 domain Nature, 433, 2005

8IJN

Bovine Heart Cytochrome c Oxidase in the Nitric Oxide-Bound Fully Reduced State at 100 K
分子名称:	(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者	Tsukihara, T, Shimada, A, Muramoto, K.
登録日	2023-02-27
公開日	2023-04-12
実験手法	X-RAY DIFFRACTION (1.8 Å)
主引用文献	Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate. Proc.Natl.Acad.Sci.USA, 107, 2010

1N77

Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and ATP.
分子名称:	ADENOSINE-5'-TRIPHOSPHATE, Glutamyl-tRNA synthetase, MAGNESIUM ION, ...
著者	Sekine, S, Nureki, O, Dubois, D.Y, Bernier, S, Chenevert, R, Lapointe, J, Vassylyev, D.G, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2002-11-13
公開日	2003-02-25
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (2.4 Å)
主引用文献	ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding EMBO J., 22, 2003

1N78

Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and glutamol-AMP.
分子名称:	GLUTAMOL-AMP, Glutamyl-tRNA synthetase, MAGNESIUM ION, ...
著者	Sekine, S, Nureki, O, Dubois, D.Y, Bernier, S, Chenevert, R, Lapointe, J, Vassylyev, D.G, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日	2002-11-13
公開日	2003-02-25
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (2.1 Å)
主引用文献	ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding EMBO J., 22, 2003

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