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4ZXE
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BU of 4zxe by Molmil
X-ray crystal structure of chitosan-binding module 1 derived from chitosanase/glucanase from Paenibacillus sp. IK-5.
分子名称: 1,2-ETHANEDIOL, Glucanase/Chitosanase, SULFATE ION
著者Shinya, S, Oi, H, Kitaoku, Y, Ohnuma, T, Numata, T, Fukamizo, T.
登録日2015-05-20
公開日2016-04-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Biochem.J., 473, 2016
4ZY9
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BU of 4zy9 by Molmil
X-ray crystal structure of selenomethionine-labelled V110M mutant of chitosan-binding module 1 derived from chitosanase/glucanase from Paenibacillus sp. IK-5
分子名称: Glucanase/chitosanase
著者Shinya, S, Oi, H, Kitaoku, Y, Ohnuma, T, Numata, T, Fukamizo, T.
登録日2015-05-21
公開日2016-04-13
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Biochem.J., 473, 2016
4ZZ5
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BU of 4zz5 by Molmil
X-ray crystal structure of chitosan-binding module 2 derived from chitosanase/glucanase from Paenibacillus sp. IK-5
分子名称: 1,2-ETHANEDIOL, Glucanase/chitosanase, SULFATE ION
著者Shinya, S, Oi, H, Kitaoku, Y, Ohnuma, T, Numata, T, Fukamizo, T.
登録日2015-05-22
公開日2016-04-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.29 Å)
主引用文献Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Biochem.J., 473, 2016
4ZZ8
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BU of 4zz8 by Molmil
X-ray crystal structure of chitosan-binding module 2 in complex with chitotriose derived from chitosanase/glucanase from Paenibacillus sp. IK-5
分子名称: 1,2-ETHANEDIOL, 2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-amino-2-deoxy-beta-D-glucopyranose, Glucanase/chitosanase, ...
著者Shinya, S, Oi, H, Kitaoku, Y, Ohnuma, T, Numata, T, Fukamizo, T.
登録日2015-05-22
公開日2016-04-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Biochem.J., 473, 2016
1X0T
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BU of 1x0t by Molmil
Crystal structure of ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3
分子名称: Ribonuclease P protein component 4, ZINC ION
著者Kakuta, Y, Ishimatsu, I, Numata, T, Kimura, K, Yao, M, Tanaka, I, Kimura, M.
登録日2005-03-29
公開日2005-11-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of a Ribonuclease P Protein Ph1601p from Pyrococcus horikoshii OT3: An Archaeal Homologue of Human Nuclear Ribonuclease P Protein Rpp21(,)
Biochemistry, 44, 2005
1UAX
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BU of 1uax by Molmil
Crystal structure of the ribonuclease H2 from Pyrococcus horikoshii OT3
分子名称: Ribonuclease HII
著者Hata, T, Numata, T, Kakuta, Y, Kimura, M.
登録日2003-03-24
公開日2004-06-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the ribonuclease H2 from Pyrococcus horikoshii OT3
To be published
3X1L
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BU of 3x1l by Molmil
Crystal Structure of the CRISPR-Cas RNA Silencing Cmr Complex Bound to a Target Analog
分子名称: CRISPR system Cmr subunit Cmr2, CRISPR system Cmr subunit Cmr3, CRISPR system Cmr subunit Cmr5, ...
著者Osawa, T, Numata, T.
登録日2014-11-20
公開日2015-05-13
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.096 Å)
主引用文献Crystal structure of the CRISPR-Cas RNA silencing Cmr complex bound to a target analog.
Mol.Cell, 58, 2015
2CZW
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BU of 2czw by Molmil
Crystal structure analysis of protein component Ph1496p of P.horikoshii ribonuclease P
分子名称: 50S ribosomal protein L7Ae
著者Fukuhara, H, Kifusa, M, Watanabe, M, Terada, A, Honda, T, Numata, T, Kakuta, Y, Kimura, M.
登録日2005-07-19
公開日2006-04-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3
Biochem.Biophys.Res.Commun., 343, 2006
1UCD
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BU of 1ucd by Molmil
Crystal structure of Ribonuclease MC1 from bitter gourd seeds complexed with 5'-UMP
分子名称: Ribonuclease MC, URACIL, URIDINE-5'-MONOPHOSPHATE
著者Suzuki, A, Numata, T, Yao, M, Kimura, M, Tanaka, I.
登録日2003-04-10
公開日2004-05-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structure of RNase MC1 from bitter gourd seeds in complex with 5'UMP
To be published
1UCC
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BU of 1ucc by Molmil
Crystal structure of the Ribonuclease MC1 from bitter gourd seeds complexed with 3'-UMP.
分子名称: 3'-URIDINEMONOPHOSPHATE, Ribonuclease MC
著者Suzuki, A, Yao, M, Tanaka, I, Numata, T, Kikukawa, S, Yamasaki, N, Kimura, M.
登録日2003-04-10
公開日2003-04-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity
Biochem.Biophys.Res.Commun., 275, 2000
1V9H
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BU of 1v9h by Molmil
Crystal structure of the RNase MC1 mutant Y101A in complex with 5'-UMP
分子名称: Ribonuclease MC, SULFATE ION, URIDINE-5'-MONOPHOSPHATE
著者Kimura, K, Numata, T, Kakuta, Y, Kimura, M.
登録日2004-01-26
公開日2004-10-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Amino acids conserved at the C-terminal half of the ribonuclease t2 family contribute to protein stability of the enzymes
Biosci.Biotechnol.Biochem., 68, 2004
1UCA
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BU of 1uca by Molmil
Crystal structure of the Ribonuclease MC1 from bitter gourd seeds complexed with 2'-UMP
分子名称: PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER, Ribonuclease MC
著者Suzuki, A, Yao, M, Tanaka, I, Numata, T, Kikukawa, S, Yamasaki, N, Kimura, M.
登録日2003-04-10
公開日2003-04-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity
Biochem.Biophys.Res.Commun., 275, 2000
1V77
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BU of 1v77 by Molmil
Crystal structure of the PH1877 protein
分子名称: hypothetical protein PH1877
著者Takagi, H, Numata, T, Kakuta, Y, Kimura, M.
登録日2003-12-12
公開日2004-08-31
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of the ribonuclease P protein Ph1877p from hyperthermophilic archaeon Pyrococcus horikoshii OT3
Biochem.Biophys.Res.Commun., 319, 2004
6M04
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BU of 6m04 by Molmil
Structure of the human homo-hexameric LRRC8D channel at 4.36 Angstroms
分子名称: Volume-regulated anion channel subunit LRRC8D
著者Nakamura, R, Kasuya, G, Yokoyama, T, Shirouzu, M, Ishitani, R, Nureki, O.
登録日2020-02-20
公開日2020-06-17
実験手法ELECTRON MICROSCOPY (4.36 Å)
主引用文献Cryo-EM structure of the volume-regulated anion channel LRRC8D isoform identifies features important for substrate permeation.
Commun Biol, 3, 2020
2RVA
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BU of 2rva by Molmil
Solution structure of chitosan-binding module 2 derived from chitosanase/glucanase from Paenibacillus sp. IK-5
分子名称: Glucanase
著者Shinya, S, Nishimura, S, Fukamizo, T.
登録日2015-05-13
公開日2016-04-06
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase.
Biochem.J., 473, 2016
2RV9
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BU of 2rv9 by Molmil
Solution structure of chitosan-binding module 1 derived from chitosanase/glucanase from Paenibacillus sp. IK-5
分子名称: Glucanase
著者Shinya, S, Nishimura, S, Fukamizo, T.
登録日2015-05-12
公開日2016-04-06
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase.
Biochem.J., 473, 2016
7XMH
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BU of 7xmh by Molmil
Crystal structure of a rice class IIIb chitinase, Oschib2
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Putative class III chitinase
著者Jun, T, Tomoya, T, Tomoyuki, N, Takayuki, O.
登録日2022-04-25
公開日2023-05-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Characterization of two rice GH18 chitinases belonging to family 8 of plant pathogenesis-related proteins.
Plant Sci., 326, 2023
7E15
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BU of 7e15 by Molmil
Protein ternary complex working for DNA replication initiation
分子名称: DNA polymerase II small subunit, Gins51, SsDNA-specific exonuclease
著者Oyama, T, Ishino, Y.
登録日2021-01-30
公開日2021-10-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Family D DNA polymerase interacts with GINS to promote CMG-helicase in the archaeal replisome.
Nucleic Acids Res., 50, 2022
3H39
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BU of 3h39 by Molmil
The complex structure of CCA-adding enzyme with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, TRNA nucleotidyl transferase-related protein
著者Toh, Y, Tomita, K.
登録日2009-04-16
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.854 Å)
主引用文献Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009
3H38
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BU of 3h38 by Molmil
The structure of CCA-adding enzyme apo form II
分子名称: TRNA nucleotidyl transferase-related protein
著者Toh, Y, Tomita, K.
登録日2009-04-16
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009
3H37
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BU of 3h37 by Molmil
The structure of CCA-adding enzyme apo form I
分子名称: TRNA nucleotidyl transferase-related protein
著者Toh, Y, Tomita, K.
登録日2009-04-16
公開日2009-10-13
最終更新日2014-02-05
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009
3H3A
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BU of 3h3a by Molmil
The complex structure of CCA-adding enzyme with CTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, TRNA nucleotidyl transferase-related protein
著者Toh, Y, Tomita, K.
登録日2009-04-16
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.801 Å)
主引用文献Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009
2D6F
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BU of 2d6f by Molmil
Crystal structure of Glu-tRNA(Gln) amidotransferase in the complex with tRNA(Gln)
分子名称: Glutamyl-tRNA(Gln) amidotransferase subunit D, Glutamyl-tRNA(Gln) amidotransferase subunit E, ZINC ION, ...
著者Nureki, O.
登録日2005-11-13
公開日2006-07-11
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Structural basis of RNA-dependent recruitment of glutamine to the genetic code
Science, 312, 2006
3AQK
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BU of 3aqk by Molmil
Structure of bacterial protein (apo form I)
分子名称: Poly(A) polymerase
著者Toh, Y, Takeshita, D, Tomita , K.
登録日2010-11-09
公開日2011-02-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献Mechanism for the alteration of the substrate specificities of template-independent RNA polymerases
Structure, 19, 2011
3AQN
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BU of 3aqn by Molmil
Complex structure of bacterial protein (apo form II)
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly(A) polymerase
著者Toh, Y, Takeshita, D, Tomita , K.
登録日2010-11-09
公開日2011-02-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Mechanism for the alteration of the substrate specificities of template-independent RNA polymerases
Structure, 19, 2011

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