Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6LFX
DownloadVisualize
BU of 6lfx by Molmil
Crystal structure of PCB4scFv(hN56D) in complex with PCB#77
分子名称: 1,2-bis(chloranyl)-4-(3-chloranyl-4-methoxy-phenyl)benzene, PCB4scFv(hN56D)
著者Nakamura, T, Yamagata, Y, Morioka, H.
登録日2019-12-03
公開日2020-12-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Crystal structure of PCB4scFv(hN56D) in complex with PCB#77
To Be Published
6LFW
DownloadVisualize
BU of 6lfw by Molmil
Crystal structure of PCB4scFv(hN56D) in complex with PCB#126
分子名称: 1,2,3-tris(chloranyl)-5-(3-chloranyl-4-methoxy-phenyl)benzene, PCB4scFv(hN56D), SODIUM ION
著者Nakamura, T, Yamagata, Y, Morioka, H.
登録日2019-12-03
公開日2020-12-09
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Crystal structure of PCB4scFv(hN56D) in complex with PCB#126
To Be Published
6LFV
DownloadVisualize
BU of 6lfv by Molmil
Crystal structure of PCB4scFv(hN56D)
分子名称: PCB4scFv(hN56D)
著者Nakamura, T, Yamagata, Y, Morioka, H.
登録日2019-12-03
公開日2020-12-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of PCB4scFv(hN56D)
To Be Published
3W6G
DownloadVisualize
BU of 3w6g by Molmil
Structure of peroxiredoxin from anaerobic hyperthermophilic archaeon Pyrococcus horikoshii
分子名称: CITRATE ANION, Probable peroxiredoxin
著者Nakamura, T, Mori, A, Niiyama, M, Matsumura, H, Tokuyama, C, Morita, J, Uegaki, K, Inoue, T.
登録日2013-02-14
公開日2013-07-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structure of peroxiredoxin from the anaerobic hyperthermophilic archaeon Pyrococcus horikoshii
Acta Crystallogr.,Sect.F, 69, 2013
7WW6
DownloadVisualize
BU of 7ww6 by Molmil
Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 20 min in 5 mM Mn2+
分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, ...
著者Nakamura, T, Yamagata, Y.
登録日2022-02-12
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase.
Proc.Natl.Acad.Sci.USA, 119, 2022
7WW7
DownloadVisualize
BU of 7ww7 by Molmil
Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 1 hr in 5 mM Mn2+
分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, ...
著者Nakamura, T, Yamagata, Y.
登録日2022-02-12
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase.
Proc.Natl.Acad.Sci.USA, 119, 2022
7WW8
DownloadVisualize
BU of 7ww8 by Molmil
Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 5 hr in 5 mM Mn2+
分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, ...
著者Nakamura, T, Yamagata, Y.
登録日2022-02-12
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase.
Proc.Natl.Acad.Sci.USA, 119, 2022
7WW9
DownloadVisualize
BU of 7ww9 by Molmil
Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 1.5 hr in 20 mM Mn2+
分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ...
著者Nakamura, T, Yamagata, Y.
登録日2022-02-12
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase.
Proc.Natl.Acad.Sci.USA, 119, 2022
7WWA
DownloadVisualize
BU of 7wwa by Molmil
Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 2.5 hr in 20 mM Mn2+
分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, ...
著者Nakamura, T, Yamagata, Y.
登録日2022-02-12
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase.
Proc.Natl.Acad.Sci.USA, 119, 2022
7X9H
DownloadVisualize
BU of 7x9h by Molmil
Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 9 hr using 5 mM Mn2+
分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ...
著者Nakamura, T, Yamagata, Y.
登録日2022-03-15
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase.
Proc.Natl.Acad.Sci.USA, 119, 2022
7X9I
DownloadVisualize
BU of 7x9i by Molmil
Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 12 hr using 5 mM Mn2+
分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ...
著者Nakamura, T, Yamagata, Y.
登録日2022-03-15
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase.
Proc.Natl.Acad.Sci.USA, 119, 2022
7X9J
DownloadVisualize
BU of 7x9j by Molmil
Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 24 hr using 5 mM Mn2+
分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, ...
著者Nakamura, T, Yamagata, Y.
登録日2022-03-15
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase.
Proc.Natl.Acad.Sci.USA, 119, 2022
7X9K
DownloadVisualize
BU of 7x9k by Molmil
Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 2 hr using 10 mM Mn2+
分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ...
著者Nakamura, T, Yamagata, Y.
登録日2022-03-15
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase.
Proc.Natl.Acad.Sci.USA, 119, 2022
7X9L
DownloadVisualize
BU of 7x9l by Molmil
Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 4 hr using 10 mM Mn2+
分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, ...
著者Nakamura, T, Yamagata, Y.
登録日2022-03-15
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase.
Proc.Natl.Acad.Sci.USA, 119, 2022
7X9O
DownloadVisualize
BU of 7x9o by Molmil
Crystal structure of MutT-8-oxo-dGMP complex with Mg2+ ions: Reaction using Mg2+
分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, ...
著者Nakamura, T, Yamagata, Y.
登録日2022-03-15
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase.
Proc.Natl.Acad.Sci.USA, 119, 2022
7X9N
DownloadVisualize
BU of 7x9n by Molmil
Crystal structure of MutT-8-oxo-dGTP complex with three Mg2+ ions: Reaction using Mg2+
分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ...
著者Nakamura, T, Yamagata, Y.
登録日2022-03-15
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase.
Proc.Natl.Acad.Sci.USA, 119, 2022
7WW5
DownloadVisualize
BU of 7ww5 by Molmil
Crystal structure of MutT-8-oxo-dGTP complex
分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SODIUM ION, ...
著者Nakamura, T, Yamagata, Y.
登録日2022-02-12
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase.
Proc.Natl.Acad.Sci.USA, 119, 2022
2E2G
DownloadVisualize
BU of 2e2g by Molmil
Crystal structure of archaeal peroxiredoxin, thioredoxin peroxidase from Aeropyrum pernix K1 (pre-oxidation form)
分子名称: Probable peroxiredoxin
著者Nakamura, T, Yamamoto, T, Abe, M, Matsumura, H, Hagihara, Y, Goto, T, Yamaguchi, T, Inoue, T.
登録日2006-11-13
公開日2007-11-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate
Proc.Natl.Acad.Sci.Usa, 105, 2008
2E2M
DownloadVisualize
BU of 2e2m by Molmil
Crystal structure of archaeal peroxiredoxin, thioredoxin peroxidase from Aeropyrum pernix K1 (sulfinic acid form)
分子名称: Probable peroxiredoxin
著者Nakamura, T, Yamamoto, T, Abe, M, Matsumura, H, Hagihara, Y, Goto, T, Yamaguchi, T, Inoue, T.
登録日2006-11-14
公開日2007-11-20
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate
Proc.Natl.Acad.Sci.Usa, 105, 2008
7EF8
DownloadVisualize
BU of 7ef8 by Molmil
Crystal structure of mouse MUTYH in complex with DNA containing AP site analogue:8-oxoG (Form I)
分子名称: Adenine DNA glycosylase, DNA (5'-D(*TP*AP*GP*TP*CP*CP*CP*(3DR)P*GP*TP*CP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*GP*AP*CP*(8OG)P*GP*GP*GP*AP*CP*T)-3'), ...
著者Nakamura, T, Nakabeppu, Y, Yamagata, Y.
登録日2021-03-21
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structure of the mammalian adenine DNA glycosylase MUTYH: insights into the base excision repair pathway and cancer.
Nucleic Acids Res., 49, 2021
7EFA
DownloadVisualize
BU of 7efa by Molmil
Crystal structure of the complex between the C-terminal domain of mouse MUTYH and human PCNA
分子名称: Adenine DNA glycosylase, Proliferating cell nuclear antigen
著者Nakamura, T, Nakabeppu, Y, Yamagata, Y.
登録日2021-03-21
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of the mammalian adenine DNA glycosylase MUTYH: insights into the base excision repair pathway and cancer.
Nucleic Acids Res., 49, 2021
7EF9
DownloadVisualize
BU of 7ef9 by Molmil
Crystal structure of mouse MUTYH in complex with DNA containing AP site analogue:8-oxoG (Form II)
分子名称: Adenine DNA glycosylase, DNA (5'-D(*AP*TP*GP*AP*GP*AP*CP*(8OG)P*GP*GP*GP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*CP*CP*CP*(3DR)P*GP*TP*CP*TP*C)-3'), ...
著者Nakamura, T, Nakabeppu, Y, Yamagata, Y.
登録日2021-03-21
公開日2021-06-23
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Structure of the mammalian adenine DNA glycosylase MUTYH: insights into the base excision repair pathway and cancer.
Nucleic Acids Res., 49, 2021
3VSD
DownloadVisualize
BU of 3vsd by Molmil
Crystal Structure of the K127A Mutant of O-Phosphoserine Sulfhydrylase Complexed with External Schiff Base of Pyridoxal 5'-Phosphate with O-Acetyl-L-Serine
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, O-ACETYLSERINE, PYRIDOXAL-5'-PHOSPHATE, ...
著者Nakamura, T, Kawai, Y, Kataoka, M, Ishikawa, K.
登録日2012-04-24
公開日2012-05-16
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Structural analysis of the substrate recognition mechanism in O-phosphoserine sulfhydrylase from the hyperthermophilic archaeon Aeropyrum pernix K1
J.Mol.Biol., 422, 2012
3VSC
DownloadVisualize
BU of 3vsc by Molmil
Crystal Structure of the K127A Mutant of O-Phosphoserine Sulfhydrylase Complexed with External Schiff Base of Pyridoxal 5'-Phosphate with O-Phospho-L-Serine
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, PHOSPHOSERINE, PYRIDOXAL-5'-PHOSPHATE, ...
著者Nakamura, T, Kawai, Y, Kataoka, M, Ishikawa, K.
登録日2012-04-24
公開日2012-05-16
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Structural analysis of the substrate recognition mechanism in O-phosphoserine sulfhydrylase from the hyperthermophilic archaeon Aeropyrum pernix K1
J.Mol.Biol., 422, 2012
3VSA
DownloadVisualize
BU of 3vsa by Molmil
Crystal Structure of O-phosphoserine sulfhydrylase without acetate
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, PYRIDOXAL-5'-PHOSPHATE, Protein CysO
著者Nakamura, T, Kawai, Y, Kataoka, M, Ishikawa, K.
登録日2012-04-24
公開日2012-05-16
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Structural analysis of the substrate recognition mechanism in O-phosphoserine sulfhydrylase from the hyperthermophilic archaeon Aeropyrum pernix K1
J.Mol.Biol., 422, 2012

226262

件を2024-10-16に公開中

PDB statisticsPDBj update infoContact PDBjnumon