3FTM
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3FU2
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![BU of 3fu2 by Molmil](/molmil-images/mine/3fu2) | |
3CUN
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![BU of 3cun by Molmil](/molmil-images/mine/3cun) | Aminoacyl-tRNA synthetase ribozyme | 分子名称: | COBALT (II) ION, MAGNESIUM ION, POTASSIUM ION, ... | 著者 | Xiao, H, Murakami, H, Suga, H, Ferre-D'Amare, A.R. | 登録日 | 2008-04-16 | 公開日 | 2008-06-24 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme. Nature, 454, 2008
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1M5K
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1M5V
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![BU of 1m5v by Molmil](/molmil-images/mine/1m5v) | Transition State Stabilization by a Catalytic RNA | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, RNA HAIRPIN RIBOZYME, ... | 著者 | Rupert, P.B, Massey, A.P, Sigurdsson, S.T, Ferre-D'Amare, A.R. | 登録日 | 2002-07-09 | 公開日 | 2002-10-12 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Transition state stabilization by a catalytic RNA Science, 298, 2002
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1M5O
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![BU of 1m5o by Molmil](/molmil-images/mine/1m5o) | Transition State Stabilization by a Catalytic RNA | 分子名称: | CALCIUM ION, RNA SUBSTRATE, RNA HAIRPIN RIBOZYME, ... | 著者 | Rupert, P.B, Massey, A.P, Sigurdsson, S.T, Ferre-D'Amare, A.R. | 登録日 | 2002-07-09 | 公開日 | 2002-10-12 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Transition state stabilization by a catalytic RNA Science, 298, 2002
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1M5P
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![BU of 1m5p by Molmil](/molmil-images/mine/1m5p) | Transition State Stabilization by a Catalytic RNA | 分子名称: | CALCIUM ION, RNA HAIRPIN RIBOZYME, RNA INHIBITOR SUBSTRATE, ... | 著者 | Rupert, P.B, Massey, A, Sigurdsson, S.T, Ferre-D'Amare, A.R. | 登録日 | 2002-07-09 | 公開日 | 2002-10-12 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Transition state stabilization by a catalytic RNA Science, 298, 2002
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8EYW
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![BU of 8eyw by Molmil](/molmil-images/mine/8eyw) | Beetroot dimer bound to ThT | 分子名称: | 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium, POTASSIUM ION, RNA (49-MER) | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-10-28 | 公開日 | 2023-05-31 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture. Nat Commun, 14, 2023
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8EYU
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![BU of 8eyu by Molmil](/molmil-images/mine/8eyu) | Structure of Beetroot dimer bound to DFAME | 分子名称: | POTASSIUM ION, RNA (49-MER), methyl (2E)-3-{(4Z)-4-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-1-methyl-5-oxo-4,5-dihydro-1H-imidazol-2-yl}prop-2-enoate | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-10-28 | 公開日 | 2023-05-31 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | 主引用文献 | Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture. Nat Commun, 14, 2023
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8EYV
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![BU of 8eyv by Molmil](/molmil-images/mine/8eyv) | Structure of Beetroot dimer bound to DFHO | 分子名称: | (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, POTASSIUM ION, RNA (45-MER) | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-10-28 | 公開日 | 2023-05-31 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.55 Å) | 主引用文献 | Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture. Nat Commun, 14, 2023
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8F0N
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![BU of 8f0n by Molmil](/molmil-images/mine/8f0n) | Wobble Beetroot (A16U-U38G) dimer bound to DFHO | 分子名称: | (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, POTASSIUM ION, RNA (49-MER) | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-11-03 | 公開日 | 2023-05-31 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.85 Å) | 主引用文献 | Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture. Nat Commun, 14, 2023
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8FI8
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8FHV
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![BU of 8fhv by Molmil](/molmil-images/mine/8fhv) | Structure of Lettuce aptamer bound to DFHBI-1T with thallium I ions | 分子名称: | (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-12-15 | 公開日 | 2023-05-10 | 最終更新日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
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8FHZ
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![BU of 8fhz by Molmil](/molmil-images/mine/8fhz) | Structure of Lettuce aptamer bound to DFHO | 分子名称: | (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-12-15 | 公開日 | 2023-05-10 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
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8FI2
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![BU of 8fi2 by Molmil](/molmil-images/mine/8fi2) | Structure of Lettuce C20T bound to DFHBI-1T | 分子名称: | (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-12-15 | 公開日 | 2023-05-10 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
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8FI1
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![BU of 8fi1 by Molmil](/molmil-images/mine/8fi1) | Structure of Lettuce C20G bound to DFHO | 分子名称: | (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-12-15 | 公開日 | 2023-05-10 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
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8FI0
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8FI7
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![BU of 8fi7 by Molmil](/molmil-images/mine/8fi7) | Structure of Lettuce C20T bound to DFHO | 分子名称: | (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-12-15 | 公開日 | 2023-05-10 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
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8FHX
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![BU of 8fhx by Molmil](/molmil-images/mine/8fhx) | Structure of Lettuce aptamer bound to DFHBI-1T | 分子名称: | (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-12-15 | 公開日 | 2023-05-10 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
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4TS2
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![BU of 4ts2 by Molmil](/molmil-images/mine/4ts2) | Crystal structure of the Spinach RNA aptamer in complex with DFHBI, magnesium ions | 分子名称: | (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one, MAGNESIUM ION, POTASSIUM ION, ... | 著者 | Warner, K.D, Chen, M.C, Song, W, Strack, R.L, Thorn, A, Jaffrey, S.R, Ferre-D'Amare, A.R. | 登録日 | 2014-06-18 | 公開日 | 2014-07-23 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.884 Å) | 主引用文献 | Structural basis for activity of highly efficient RNA mimics of green fluorescent protein. Nat.Struct.Mol.Biol., 21, 2014
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4TS0
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![BU of 4ts0 by Molmil](/molmil-images/mine/4ts0) | Crystal structure of the Spinach RNA aptamer in complex with DFHBI, barium ions | 分子名称: | (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one, BARIUM ION, POTASSIUM ION, ... | 著者 | Warner, K.D, Chen, M.C, Song, W, Strack, R.L, Thorn, A, Jaffrey, S.R, Ferre-D'Amare, A.R. | 登録日 | 2014-06-18 | 公開日 | 2014-07-23 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Structural basis for activity of highly efficient RNA mimics of green fluorescent protein. Nat.Struct.Mol.Biol., 21, 2014
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7MKY
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![BU of 7mky by Molmil](/molmil-images/mine/7mky) | SARS-CoV-2 frameshifting pseudoknot RNA | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, COBALT HEXAMMINE(III), MAGNESIUM ION, ... | 著者 | Jones, C.P, Ferre-D'Amare, A.R. | 登録日 | 2021-04-27 | 公開日 | 2021-05-26 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (1.31 Å) | 主引用文献 | Crystal structure of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) frameshifting pseudoknot. Rna, 28, 2022
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7MLW
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6UP0
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![BU of 6up0 by Molmil](/molmil-images/mine/6up0) | |
6V9D
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![BU of 6v9d by Molmil](/molmil-images/mine/6v9d) | |