1V3U
 
 | | Crystal structure of leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase in apo form | | 分子名称: | CHLORIDE ION, leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase | | 著者 | Hori, T, Yokomizo, T, Ago, H, Sugahara, M, Ueno, G, Yamamoto, M, Kumasaka, T, Shimizu, T, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2003-11-05 | | 公開日 | 2004-07-13 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-Oxo-prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop
J.Biol.Chem., 279, 2004
|
|
1VEC
 | | Crystal structure of the N-terminal domain of rck/p54, a human DEAD-box protein | | 分子名称: | ATP-dependent RNA helicase p54, L(+)-TARTARIC ACID, ZINC ION | | 著者 | Hogetsu, K, Matsui, T, Yukihiro, Y, Tanaka, M, Sato, T, Kumasaka, T, Tanaka, N. | | 登録日 | 2004-03-29 | | 公開日 | 2004-04-13 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.01 Å) | | 主引用文献 | Structural insight of human DEAD-box protein rck/p54 into its substrate recognition with conformational changes
Genes Cells, 11, 2006
|
|
1ERZ
 | | CRYSTAL STRUCTURE OF N-CARBAMYL-D-AMINO ACID AMIDOHYDROLASE WITH A NOVEL CATALYTIC FRAMEWORK COMMON TO AMIDOHYDROLASES | | 分子名称: | N-CARBAMYL-D-AMINO ACID AMIDOHYDROLASE | | 著者 | Nakai, T, Hasegawa, T, Yamashita, E, Yamamoto, M, Kumasaka, T, Ueki, T, Nanba, H, Ikenaka, Y, Takahashi, S, Sato, M, Tsukihara, T. | | 登録日 | 2000-04-06 | | 公開日 | 2001-04-06 | | 最終更新日 | 2024-02-07 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Crystal structure of N-carbamyl-D-amino acid amidohydrolase with a novel catalytic framework common to amidohydrolases.
Structure Fold.Des., 8, 2000
|
|
1WQS
 | | Crystal structure of Norovirus 3C-like protease | | 分子名称: | 3C-like protease, D(-)-TARTARIC ACID, L(+)-TARTARIC ACID, ... | | 著者 | Nakamura, K, Someya, Y, Kumasaka, T, Tanaka, N. | | 登録日 | 2004-10-01 | | 公開日 | 2005-10-04 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | A norovirus protease structure provides insights into active and substrate binding site integrity
J.Virol., 79, 2005
|
|
4XTC
 | | Crystal structure of bacterial alginate ABC transporter in complex with alginate pentasaccharide-bound periplasmic protein | | 分子名称: | AlgM1, AlgM2, AlgQ2, ... | | 著者 | Kaneko, A, Maruyama, Y, Mizuno, N, Baba, S, Kumasaka, T, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2015-01-23 | | 公開日 | 2016-03-02 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (3.6 Å) | | 主引用文献 | A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate.
J.Biol.Chem., 292, 2017
|
|
7WB8
 | | Crystal structure of Bovine Pancreatic Trypsin in complex with 5-Methoxytryptamine at Room Temperature | | 分子名称: | 2-(5-methoxy-1H-indol-3-yl)ethanamine, CALCIUM ION, Cationic trypsin, ... | | 著者 | Sakai, N, Okumura, H, Yamamoto, M, Kumasaka, T. | | 登録日 | 2021-12-15 | | 公開日 | 2022-06-15 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.38 Å) | | 主引用文献 | In situ crystal data-collection and ligand-screening system at SPring-8.
Acta Crystallogr.,Sect.F, 78, 2022
|
|
7WB9
 | | Crystal structure of Bovine Pancreatic Trypsin in complex with 5-Chlorotryptamine at Room Temperature | | 分子名称: | 2-(5-chloranyl-1~{H}-indol-3-yl)ethanamine, CALCIUM ION, Cationic trypsin, ... | | 著者 | Sakai, N, Okumura, H, Yamamoto, M, Kumasaka, T. | | 登録日 | 2021-12-15 | | 公開日 | 2022-06-15 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.56 Å) | | 主引用文献 | In situ crystal data-collection and ligand-screening system at SPring-8.
Acta Crystallogr.,Sect.F, 78, 2022
|
|
7WA2
 | | Crystal structure of Bovine Pancreatic Trypsin in complex with 4-Methoxybenzamidine at Room Temperature | | 分子名称: | 4-methoxybenzenecarboximidamide, CALCIUM ION, Cationic trypsin, ... | | 著者 | Sakai, N, Okumura, H, Yamamoto, M, Kumasaka, T. | | 登録日 | 2021-12-11 | | 公開日 | 2022-06-15 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.52 Å) | | 主引用文献 | In situ crystal data-collection and ligand-screening system at SPring-8.
Acta Crystallogr.,Sect.F, 78, 2022
|
|
7WB6
 | | Crystal structure of Bovine Pancreatic Trypsin in complex with 4-Bromobenzamidine at Room Temperature | | 分子名称: | 4-bromanylbenzenecarboximidamide, CALCIUM ION, Cationic trypsin, ... | | 著者 | Sakai, N, Okumura, H, Yamamoto, M, Kumasaka, T. | | 登録日 | 2021-12-15 | | 公開日 | 2022-06-15 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.48 Å) | | 主引用文献 | In situ crystal data-collection and ligand-screening system at SPring-8.
Acta Crystallogr.,Sect.F, 78, 2022
|
|
7WA0
 | | Crystal structure of Bovine Pancreatic Trypsin in complex with Benzamidine at Room Temperature | | 分子名称: | BENZAMIDINE, CALCIUM ION, Cationic trypsin, ... | | 著者 | Sakai, N, Okumura, H, Yamamoto, M, Kumasaka, T. | | 登録日 | 2021-12-11 | | 公開日 | 2022-06-15 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.77 Å) | | 主引用文献 | In situ crystal data-collection and ligand-screening system at SPring-8.
Acta Crystallogr.,Sect.F, 78, 2022
|
|
7WBA
 | | Crystal structure of Bovine Pancreatic Trypsin in complex with Tryptamine at Room Temperature | | 分子名称: | 2-(1H-INDOL-3-YL)ETHANAMINE, CALCIUM ION, Cationic trypsin, ... | | 著者 | Sakai, N, Okumura, H, Yamamoto, M, Kumasaka, T. | | 登録日 | 2021-12-15 | | 公開日 | 2022-06-15 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | | 主引用文献 | In situ crystal data-collection and ligand-screening system at SPring-8.
Acta Crystallogr.,Sect.F, 78, 2022
|
|
7WB7
 | | Crystal structure of Bovine Pancreatic Trypsin in complex with Serotonin at Room Temperature | | 分子名称: | CALCIUM ION, Cationic trypsin, DIMETHYL SULFOXIDE, ... | | 著者 | Sakai, N, Okumura, H, Yamamoto, M, Kumasaka, T. | | 登録日 | 2021-12-15 | | 公開日 | 2022-06-15 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | | 主引用文献 | In situ crystal data-collection and ligand-screening system at SPring-8.
Acta Crystallogr.,Sect.F, 78, 2022
|
|
4XIG
 | | Crystal structure of bacterial alginate ABC transporter determined through humid air and glue-coating method | | 分子名称: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, AlgM1, AlgM2, ... | | 著者 | Kaneko, A, Maruyama, Y, Mizuno, N, Baba, S, Kumasaka, T, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2015-01-07 | | 公開日 | 2016-01-13 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (3.402 Å) | | 主引用文献 | A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate.
J.Biol.Chem., 292, 2017
|
|
1WPR
 | | Crystal structure of RsbQ inhibited by PMSF | | 分子名称: | GLYCEROL, Sigma factor sigB regulation protein rsbQ, phenylmethanesulfonic acid | | 著者 | Kaneko, T, Tanaka, N, Kumasaka, T. | | 登録日 | 2004-09-11 | | 公開日 | 2005-02-01 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | | 主引用文献 | Crystal structures of RsbQ, a stress-response regulator in Bacillus subtilis
Protein Sci., 14, 2005
|
|
1EH1
 | | RIBOSOME RECYCLING FACTOR FROM THERMUS THERMOPHILUS | | 分子名称: | RIBOSOME RECYCLING FACTOR | | 著者 | Toyoda, T, Tin, O.F, Ito, K, Fujiwara, T, Kumasaka, T, Yamamoto, M, Garber, M.B, Nakamura, Y. | | 登録日 | 2000-02-18 | | 公開日 | 2000-11-15 | | 最終更新日 | 2024-02-07 | | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | | 主引用文献 | Crystal structure combined with genetic analysis of the Thermus thermophilus ribosome recycling factor shows that a flexible hinge may act as a functional switch.
RNA, 6, 2000
|
|
1WOM
 | | Crystal structure of RsbQ | | 分子名称: | MALONIC ACID, S-1,2-PROPANEDIOL, Sigma factor sigB regulation protein rsbQ | | 著者 | Kaneko, T, Kumasaka, T, Tanaka, N. | | 登録日 | 2004-08-21 | | 公開日 | 2005-02-01 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Crystal structures of RsbQ, a stress-response regulator in Bacillus subtilis
Protein Sci., 14, 2005
|
|
7DVO
 | | Structure of Reaction Intermediate of Cytochrome P450 NO Reductase (P450nor) Determined by XFEL | | 分子名称: | GLYCEROL, NADP nitrous oxide-forming nitric oxide reductase, NITRIC OXIDE, ... | | 著者 | Nomura, T, Kimura, T, Kanematsu, Y, Yamashita, K, Hirata, K, Ueno, G, Murakami, H, Hisano, T, Yamagiwa, R, Takeda, H, Gopalasingam, C, Yuki, K, Kousaka, R, Yanagasawa, S, Shoji, O, Kumasaka, T, Takano, Y, Ago, H, Yamamoto, M, Sugimoto, H, Tosha, T, Kubo, M, Shiro, Y. | | 登録日 | 2021-01-14 | | 公開日 | 2021-05-19 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Short-lived intermediate in N 2 O generation by P450 NO reductase captured by time-resolved IR spectroscopy and XFEL crystallography.
Proc.Natl.Acad.Sci.USA, 118, 2021
|
|
1GC2
 | | CRYSTAL STRUCTURE OF THE PYRIDOXAL-5'-PHOSPHATE DEPENDENT L-METHIONINE GAMMA-LYASE FROM PSEUDOMONAS PUTIDA | | 分子名称: | METHIONINE GAMMA-LYASE | | 著者 | Motoshima, H, Inagaki, K, Kumasaka, T, Furuichi, M, Inoue, H, Tamura, T, Esaki, N, Soda, K, Tanaka, N, Yamamoto, M, Tanaka, H. | | 登録日 | 2000-07-06 | | 公開日 | 2002-05-08 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Crystal structure of the pyridoxal 5'-phosphate dependent L-methionine gamma-lyase from Pseudomonas putida.
J.Biochem., 128, 2000
|
|
1GE6
 | | ZINC PEPTIDASE FROM GRIFOLA FRONDOSA | | 分子名称: | PEPTIDYL-LYS METALLOENDOPEPTIDASE, ZINC ION, alpha-D-mannopyranose | | 著者 | Hori, T, Kumasaka, T, Yamamoto, M, Nonaka, T, Tanaka, N, Hashimoto, Y, Ueki, T, Takio, K. | | 登録日 | 2000-10-11 | | 公開日 | 2001-03-14 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
|
|
1GE5
 | | ZINC PEPTIDASE FROM GRIFOLA FRONDOSA | | 分子名称: | PEPTIDYL-LYS METALLOENDOPEPTIDASE, ZINC ION, alpha-D-mannopyranose | | 著者 | Hori, T, Kumasaka, T, Yamamoto, M, Nonaka, T, Tanaka, N, Hashimoto, Y, Ueki, T, Takio, K. | | 登録日 | 2000-10-11 | | 公開日 | 2001-03-14 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
|
|
1GE7
 | | ZINC PEPTIDASE FROM GRIFOLA FRONDOSA | | 分子名称: | PEPTIDYL-LYS METALLOENDOPEPTIDASE, ZINC ION, alpha-D-mannopyranose | | 著者 | Hori, T, Kumasaka, T, Yamamoto, M, Nonaka, T, Tanaka, N, Hashimoto, Y, Ueki, T, Takio, K. | | 登録日 | 2000-10-11 | | 公開日 | 2001-03-14 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
|
|
1G12
 | | ZINC PEPTIDASE FROM GRIFOLA FRONDOSA | | 分子名称: | PEPTIDYL-LYS METALLOENDOPEPTIDASE, ZINC ION, alpha-D-mannopyranose | | 著者 | Hori, T, Kumasaka, T, Yamamoto, M, Nonaka, T, Tanaka, N, Hashimoto, Y, Ueki, T, Takio, K. | | 登録日 | 2000-10-10 | | 公開日 | 2001-03-14 | | 最終更新日 | 2020-07-29 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
|
|
1GC0
 | | CRYSTAL STRUCTURE OF THE PYRIDOXAL-5'-PHOSPHATE DEPENDENT L-METHIONINE GAMMA-LYASE FROM PSEUDOMONAS PUTIDA | | 分子名称: | METHIONINE GAMMA-LYASE | | 著者 | Motoshima, H, Inagaki, K, Kumasaka, T, Furuichi, M, Inoue, H, Tamura, T, Esaki, N, Soda, K, Tanaka, N, Yamamoto, M, Tanaka, H. | | 登録日 | 2000-07-06 | | 公開日 | 2002-05-08 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Crystal structure of the pyridoxal 5'-phosphate dependent L-methionine gamma-lyase from Pseudomonas putida.
J.Biochem., 128, 2000
|
|
2DCJ
 | | A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1 | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, GLYCEROL, ... | | 著者 | Ihsanawati, Tanaka, N, Nakamura, S, Kumasaka, T. | | 登録日 | 2006-01-07 | | 公開日 | 2007-03-20 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.24 Å) | | 主引用文献 | A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1
To be Published
|
|
2DCK
 | | A tetragonal-lattice structure of alkaliphilic XynJ from Bacillus sp. 41M-1 | | 分子名称: | CALCIUM ION, GLYCEROL, xylanase J | | 著者 | Fibriansah, G, Ihsanawati, Tanaka, N, Nakamura, S, Kumasaka, T. | | 登録日 | 2006-01-07 | | 公開日 | 2007-03-20 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1
To be Published
|
|
