Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5LTC
DownloadVisualize
BU of 5ltc by Molmil
Crystal structure of doubly spin labelled VcSiaP R125
分子名称: C4-dicarboxylate-binding periplasmic protein
著者Peter, M, Glaenzer, J, Hagelueken, G.
登録日2016-09-06
公開日2017-01-25
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.101 Å)
主引用文献PELDOR Spectroscopy Reveals Two Defined States of a Sialic Acid TRAP Transporter SBP in Solution.
Biophys. J., 112, 2017
7QE5
DownloadVisualize
BU of 7qe5 by Molmil
Structure of the membrane domains of the sialic acid TRAP transporter HiSiaQM from Haemophilus influenzae
分子名称: Megabody3, Sialic acid TRAP transporter permease protein SiaT
著者Peter, M.F, Hagelueken, G.
登録日2021-12-01
公開日2022-07-27
最終更新日2022-08-17
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Structural and mechanistic analysis of a tripartite ATP-independent periplasmic TRAP transporter.
Nat Commun, 13, 2022
5OCP
DownloadVisualize
BU of 5ocp by Molmil
The periplasmic binding protein component of the arabinose ABC transporter from Shewanella sp. ANA-3 bound to alpha and beta-L-arabinofuranose
分子名称: ACETATE ION, GLYCEROL, Periplasmic binding protein/LacI transcriptional regulator, ...
著者Herman, R.
登録日2017-07-03
公開日2018-08-01
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献CHARACTERISATION OF A FURANOSE SPECIFIC ABC TRANSPORTER ESSENTIAL FOR ARABINOSE UTILISATION FROM THE LIGNOCELLULOSE DEGRADING BACTERIUM SHEWANELLA SP. ANA-3
To Be Published
6Z3B
DownloadVisualize
BU of 6z3b by Molmil
Low resolution structure of RgNanOx
分子名称: CITRIC ACID, Gfo/Idh/MocA family oxidoreductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Naismith, J.H, Lee, M.
登録日2020-05-19
公開日2020-07-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.58 Å)
主引用文献Uncovering a novel molecular mechanism for scavenging sialic acids in bacteria.
J.Biol.Chem., 295, 2020
7A5C
DownloadVisualize
BU of 7a5c by Molmil
Crystal structure of spin labelled VcSiaP R125A bound to an artificial peptide ligand.
分子名称: GLYCEROL, Sialic acid-binding periplasmic protein SiaP
著者Peter, M.F, Glaenzer, J, Hagelueken, G.
登録日2020-08-21
公開日2020-12-30
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Triggering Closure of a Sialic Acid TRAP Transporter Substrate Binding Protein through Binding of Natural or Artificial Substrates.
J.Mol.Biol., 433, 2020
7A5Q
DownloadVisualize
BU of 7a5q by Molmil
Crystal structure of VcSiaP bound to sialic acid
分子名称: DctP family TRAP transporter solute-binding subunit, GLYCEROL, N-acetyl-beta-neuraminic acid, ...
著者Schneberger, N, Peter, M.F, Hagelueken, G.
登録日2020-08-21
公開日2020-12-30
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Triggering Closure of a Sialic Acid TRAP Transporter Substrate Binding Protein through Binding of Natural or Artificial Substrates.
J.Mol.Biol., 433, 2020
8CP7
DownloadVisualize
BU of 8cp7 by Molmil
Structure of the disulfide-locked substrate binding protein HiSiaP.
分子名称: N-acetyl-beta-neuraminic acid, Sialic acid-binding periplasmic protein SiaP, ZINC ION
著者Kim, Y, Peter, M.F, Hagelueken, G.
登録日2023-03-02
公開日2023-12-27
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Conformational coupling of the sialic acid TRAP transporter HiSiaQM with its substrate binding protein HiSiaP.
Nat Commun, 15, 2024
8AY0
DownloadVisualize
BU of 8ay0 by Molmil
Crystal Structure of the peptide binding protein DppE from Bacillus subtilis in complex with murein tripeptide
分子名称: 1,2-ETHANEDIOL, Dipeptide-binding protein DppE, L-ALA-GAMMA-D-GLU-MESO-DIAMINOPIMELIC ACID, ...
著者Hughes, A.M, Dodson, E.J, Wilkinson, A.J.
登録日2022-09-01
公開日2023-02-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Peptide transport in Bacillus subtilis - structure and specificity in the extracellular solute binding proteins OppA and DppE.
Microbiology (Reading, Engl.), 168, 2022
8ARN
DownloadVisualize
BU of 8arn by Molmil
Crystal structure of the peptide binding protein, OppA, from Bacillus subtilis in complex with an endogenous tetrapeptide
分子名称: Endogenous tetrapeptide (SER-ASN-SER-SER), Oligopeptide-binding protein OppA
著者Hughes, A, Dodson, E.J, Wilkinson, A.J.
登録日2022-08-17
公開日2023-02-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Peptide transport in Bacillus subtilis - structure and specificity in the extracellular solute binding proteins OppA and DppE.
Microbiology (Reading, Engl.), 168, 2022
8ARE
DownloadVisualize
BU of 8are by Molmil
Crystal structure of the peptide binding protein, OppA, from Bacillus subtilis in complex with a PhrE-derived pentapeptide
分子名称: Oligopeptide-binding protein OppA, Phosphatase RapE inhibitor, SULFATE ION
著者Hughes, A, Dodson, E.J, Wilkinson, A.J.
登録日2022-08-16
公開日2023-02-22
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Peptide transport in Bacillus subtilis - structure and specificity in the extracellular solute binding proteins OppA and DppE.
Microbiology (Reading, Engl.), 168, 2022
8AZB
DownloadVisualize
BU of 8azb by Molmil
Crystal Structure of the peptide binding protein DppE from Bacillus subtilis in the unliganded state
分子名称: Dipeptide-binding protein DppE
著者Hughes, A.M, Dodson, E.J, Wilkinson, A.J.
登録日2022-09-05
公開日2023-02-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Peptide transport in Bacillus subtilis - structure and specificity in the extracellular solute binding proteins OppA and DppE.
Microbiology (Reading, Engl.), 168, 2022
2XA5
DownloadVisualize
BU of 2xa5 by Molmil
Structure of substrate binding protein SiaP (A11N) in complex with Neu5Ac
分子名称: N-acetyl-beta-neuraminic acid, SIALIC ACID-BINDING PERIPLASMIC PROTEIN SIAP
著者Fischer, M, Hubbard, R.E.
登録日2010-03-26
公開日2011-04-06
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.09 Å)
主引用文献Water networks can determine the affinity of ligand binding to proteins.
J.Am.Chem.Soc., 2019
2WX9
DownloadVisualize
BU of 2wx9 by Molmil
Crystal structure of the sialic acid binding periplasmic protein SiaP
分子名称: N-glycolyl-beta-neuraminic acid, SIALIC ACID-BINDING PERIPLASMIC PROTEIN SIAP
著者Fischer, M, Hubbard, R.E.
登録日2009-11-05
公開日2011-01-26
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Water networks can determine the affinity of ligand binding to proteins.
J.Am.Chem.Soc., 2019
2WYP
DownloadVisualize
BU of 2wyp by Molmil
Crystal structure of sialic acid binding protein
分子名称: SIALIC ACID-BINDING PERIPLASMIC PROTEIN SIAP, deamino-beta-neuraminic acid
著者Fischer, M, Hubbard, R.E.
登録日2009-11-18
公開日2011-01-26
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Water networks can determine the affinity of ligand binding to proteins.
J.Am.Chem.Soc., 2019
2WYK
DownloadVisualize
BU of 2wyk by Molmil
SiaP in complex with Neu5Gc
分子名称: N-glycolyl-beta-neuraminic acid, SIALIC ACID-BINDING PERIPLASMIC PROTEIN SIAP, THIOCYANATE ION
著者Fischer, M, Hubbard, R.E.
登録日2009-11-16
公開日2011-01-26
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Water networks can determine the affinity of ligand binding to proteins.
J.Am.Chem.Soc., 2019
2V4C
DownloadVisualize
BU of 2v4c by Molmil
Structure of sialic acid binding protein (SiaP) in the presence of KDN
分子名称: SIALIC ACID-BINDING PERIPLASMIC PROTEIN SIAP, deamino-beta-neuraminic acid
著者Fischer, M, Hubbard, R.E.
登録日2008-09-18
公開日2010-03-31
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Water networks can determine the affinity of ligand binding to proteins.
J.Am.Chem.Soc., 2019
2XXK
DownloadVisualize
BU of 2xxk by Molmil
SiaP complex
分子名称: N-acetyl-beta-neuraminic acid, SIALIC ACID-BINDING PERIPLASMIC PROTEIN SIAP
著者Fischer, M, Hubbard, R.E.
登録日2010-11-10
公開日2011-11-23
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Siap Complex
To be Published
2XWO
DownloadVisualize
BU of 2xwo by Molmil
SiaP R147E mutant in complex with sialylamide
分子名称: (2S,4S,5R,6R)-5-acetamido-2,4-dihydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxamide, SIALIC ACID-BINDING PERIPLASMIC PROTEIN SIAP
著者Fischer, M, Hubbard, R.E.
登録日2010-11-04
公開日2011-11-16
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Tripartite ATP-Independent Periplasmic (Trap) Transporters Use an Arginine-Mediated Selectivity Filter for High Affinity Substrate Binding.
J.Biol.Chem., 290, 2015
2XWV
DownloadVisualize
BU of 2xwv by Molmil
SiaP complex
分子名称: N-acetyl-beta-neuraminic acid, SIALIC ACID-BINDING PERIPLASMIC PROTEIN SIAP
著者Fischer, M, Hubbard, R.E.
登録日2010-11-05
公開日2011-11-16
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Tripartite ATP-Independent Periplasmic (Trap) Transporters Use an Arginine-Mediated Selectivity Filter for High Affinity Substrate Binding.
J.Biol.Chem., 290, 2015
2XWI
DownloadVisualize
BU of 2xwi by Molmil
SiaP R147K mutant in complex with Neu5Ac
分子名称: N-acetyl-beta-neuraminic acid, SIALIC ACID-BINDING PERIPLASMIC PROTEIN SIAP
著者Fischer, M, Hubbard, R.E.
登録日2010-11-04
公開日2011-11-23
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.195 Å)
主引用文献Tripartite ATP-Independent Periplasmic (Trap) Transporters Use an Arginine-Mediated Selectivity Filter for High Affinity Substrate Binding.
J.Biol.Chem., 290, 2015
2XWK
DownloadVisualize
BU of 2xwk by Molmil
SiaP R147A mutant in complex with Neu5Ac
分子名称: N-acetyl-beta-neuraminic acid, SIALIC ACID-BINDING PERIPLASMIC PROTEIN SIAP
著者Fischer, M, Hubbard, R.E.
登録日2010-11-04
公開日2011-11-23
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Tripartite ATP-Independent Periplasmic (Trap) Transporters Use an Arginine-Mediated Selectivity Filter for High Affinity Substrate Binding.
J.Biol.Chem., 290, 2015
6RB7
DownloadVisualize
BU of 6rb7 by Molmil
Ruminococcus gnavus sialic acid aldolase catalytic lysine mutant
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BICINE, DI(HYDROXYETHYL)ETHER, ...
著者Owen, C.D, Bell, A, Juge, N, Walsh, M.A.
登録日2019-04-09
公開日2019-09-25
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Elucidation of a sialic acid metabolism pathway in mucus-foraging Ruminococcus gnavus unravels mechanisms of bacterial adaptation to the gut.
Nat Microbiol, 4, 2019
6RAB
DownloadVisualize
BU of 6rab by Molmil
Ruminococcus gnavus sialic acid aldolase Wild Type
分子名称: Putative N-acetylneuraminate lyase
著者Owen, C.D, Bell, A, Juge, N, Walsh, M.A.
登録日2019-04-05
公開日2019-09-25
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Elucidation of a sialic acid metabolism pathway in mucus-foraging Ruminococcus gnavus unravels mechanisms of bacterial adaptation to the gut.
Nat Microbiol, 4, 2019
6RD1
DownloadVisualize
BU of 6rd1 by Molmil
Ruminococcus gnavus sialic acid aldolase catalytic lysine mutant in complex with sialic acid
分子名称: 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-2-ulosonic acid, Putative N-acetylneuraminate lyase
著者Owen, C.D, Bell, A, Juge, N, Walsh, M.A.
登録日2019-04-12
公開日2019-09-25
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.892 Å)
主引用文献Elucidation of a sialic acid metabolism pathway in mucus-foraging Ruminococcus gnavus unravels mechanisms of bacterial adaptation to the gut.
Nat Microbiol, 4, 2019
<12

 

227344

件を2024-11-13に公開中

PDB statisticsPDBj update infoContact PDBjnumon