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8SK7
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BU of 8sk7 by Molmil
Cryo-EM structure of designed Influenza HA binder, HA_20, bound to Influenza HA (Strain: Iowa43)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HA_20 minibinder (RFdiffusion-designed), ...
著者Borst, A.J, Bennett, N.R.
登録日2023-04-18
公開日2023-06-14
最終更新日2023-09-13
実験手法ELECTRON MICROSCOPY (2.93 Å)
主引用文献De novo design of protein structure and function with RFdiffusion.
Nature, 620, 2023
6CZI
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BU of 6czi by Molmil
Structure of a redesigned beta barrel, mFAP1, bound to DFHBI
分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one, mFAP1
著者Doyle, L.A, Stoddard, B.L.
登録日2018-04-09
公開日2018-09-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献De novo design of a fluorescence-activating beta-barrel.
Nature, 561, 2018
6CZG
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BU of 6czg by Molmil
Structure of a redesigned beta barrel, b11L5F_LGL
分子名称: b11L5F_LGL
著者Doyle, L.A, Stoddard, B.L.
登録日2018-04-09
公開日2018-09-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献De novo design of a fluorescence-activating beta-barrel.
Nature, 561, 2018
6CZJ
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BU of 6czj by Molmil
Structure of a redesigned beta barrel, b10
分子名称: SULFATE ION, b10
著者Doyle, L.A, Stoddard, B.L.
登録日2018-04-09
公開日2018-09-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献De novo design of a fluorescence-activating beta-barrel.
Nature, 561, 2018
6CZH
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BU of 6czh by Molmil
Structure of a redesigned beta barrel, mFAP0, bound to DFHBI
分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one, mFAP0
著者Doyle, L.A, Stoddard, B.L.
登録日2018-04-09
公開日2018-09-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献De novo design of a fluorescence-activating beta-barrel.
Nature, 561, 2018
5UWB
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BU of 5uwb by Molmil
Re-refined 4FCZ: lipid-bound crystal structure of toluene-tolerance protein from Pseudomonas putida
分子名称: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, Toluene tolerance protein
著者Bhabha, G, Ekiert, D.C.
登録日2017-02-20
公開日2017-04-19
最終更新日2019-11-20
実験手法X-RAY DIFFRACTION (2.604 Å)
主引用文献Architectures of Lipid Transport Systems for the Bacterial Outer Membrane.
Cell, 169, 2017
7UR7
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BU of 7ur7 by Molmil
17_bp_sh3, a small beta-barrel de novo designed protein
分子名称: 17_bp_sh3
著者Bera, A.K, Kim, D, Baker, D.
登録日2022-04-21
公開日2023-03-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.21 Å)
主引用文献De novo design of small beta barrel proteins.
Proc.Natl.Acad.Sci.USA, 120, 2023
7UWY
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BU of 7uwy by Molmil
NMR solution structure of the De novo designed small beta-barrel protein 29_bp_sh3
分子名称: De novo designed small beta-barrel protein 29_bp_sh3
著者Peterson, F.C, Kim, D.E, Jensen, D.R, Saleem, A, Chow, C.M, Volkman, B.F, Baker, D.
登録日2022-05-04
公開日2023-03-22
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献De novo design of small beta barrel proteins.
Proc.Natl.Acad.Sci.USA, 120, 2023
7UWZ
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BU of 7uwz by Molmil
NMR solution structure of the De novo designed small beta-barrel protein 33_bp_sh3
分子名称: De novo designed small beta-barrel protein 33_bp_sh3
著者Peterson, F.C, Kim, D.E, Jensen, D.R, Saleem, A, Chow, C.M, Volkman, B.F, Baker, D.
登録日2022-05-04
公開日2023-03-22
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献De novo design of small beta barrel proteins.
Proc.Natl.Acad.Sci.USA, 120, 2023
7UR8
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BU of 7ur8 by Molmil
170_h_ob, a small beta-barrel de novo designed protein
分子名称: 170_h_ob
著者Bera, A.K, Kim, D, Baker, D.
登録日2022-04-21
公開日2023-03-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献De novo design of small beta barrel proteins.
Proc.Natl.Acad.Sci.USA, 120, 2023
6VK3
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BU of 6vk3 by Molmil
CryoEM structure of Hrd3/Yos9 complex
分子名称: Hrd3, Protein OS-9 homolog
著者Wu, X, Rapoport, T.A.
登録日2020-01-18
公開日2020-04-29
最終更新日2020-05-06
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex.
Science, 368, 2020
6VJZ
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BU of 6vjz by Molmil
CryoEM structure of Hrd1-Usa1/Der1/Hrd3 complex of the expected topology
分子名称: Degradation in the endoplasmic reticulum protein 1, ERAD-associated E3 ubiquitin-protein ligase HRD1, ERAD-associated E3 ubiquitin-protein ligase component HRD3, ...
著者Wu, X, Rapoport, T.A.
登録日2020-01-18
公開日2020-04-29
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex.
Science, 368, 2020
6VK1
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BU of 6vk1 by Molmil
CryoEM structure of Hrd1/Hrd3 part from Hrd1-Usa1/Der1/Hrd3 complex
分子名称: ERAD-associated E3 ubiquitin-protein ligase HRD1, ERAD-associated E3 ubiquitin-protein ligase component HRD3
著者Wu, X, Rapoport, T.A.
登録日2020-01-18
公開日2020-04-29
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex.
Science, 368, 2020
6VK0
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BU of 6vk0 by Molmil
CryoEM structure of Hrd1-Usa1/Der1/Hrd3 of the flipped topology
分子名称: Degradation in the endoplasmic reticulum protein 1, ERAD-associated E3 ubiquitin-protein ligase HRD1, ERAD-associated E3 ubiquitin-protein ligase component HRD3, ...
著者Wu, X, Rapoport, T.A.
登録日2020-01-18
公開日2020-04-29
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex.
Science, 368, 2020
6VJY
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BU of 6vjy by Molmil
Cryo-EM structure of Hrd1/Hrd3 monomer
分子名称: ERAD-associated E3 ubiquitin-protein ligase HRD1, ERAD-associated E3 ubiquitin-protein ligase component HRD3
著者Wu, X, Rapoport, T.A.
登録日2020-01-18
公開日2020-04-29
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex.
Science, 368, 2020
6UF2
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BU of 6uf2 by Molmil
NMR structure of biofilm-related Se0862 from Synechococcus elongatus
分子名称: Biofilm-related protein
著者Zhang, N, LiWang, A.L.
登録日2019-09-23
公開日2020-09-30
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution NMR structure of Se0862, a highly conserved cyanobacterial protein involved in biofilm formation.
Protein Sci., 29, 2020
5UW2
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BU of 5uw2 by Molmil
Structure of E. coli MCE protein MlaD, periplasmic domain
分子名称: Probable phospholipid ABC transporter-binding protein MlaD, ZINC ION
著者Bhabha, G, Ekiert, D.C.
登録日2017-02-20
公開日2017-04-12
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Architectures of Lipid Transport Systems for the Bacterial Outer Membrane.
Cell, 169, 2017
5UW8
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BU of 5uw8 by Molmil
Structure of E. coli MCE protein MlaD, core MCE domain
分子名称: Probable phospholipid ABC transporter-binding protein MlaD
著者Bhabha, G, Ekiert, D.C.
登録日2017-02-20
公開日2017-04-12
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Architectures of Lipid Transport Systems for the Bacterial Outer Membrane.
Cell, 169, 2017
5UWA
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BU of 5uwa by Molmil
Structure of E. coli phospholipid binding protein MlaC
分子名称: (2S)-3-(2-aminoethoxy)propane-1,2-diyl dihexadecanoate, Probable phospholipid-binding protein MlaC
著者Bhabha, G, Ekiert, D.C.
登録日2017-02-20
公開日2017-04-12
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.501 Å)
主引用文献Architectures of Lipid Transport Systems for the Bacterial Outer Membrane.
Cell, 169, 2017
5UVN
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BU of 5uvn by Molmil
Structure of E. coli MCE protein PqiB, periplasmic domain
分子名称: Paraquat-inducible protein B
著者Bhabha, G, Ekiert, D.C.
登録日2017-02-20
公開日2017-04-12
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.96 Å)
主引用文献Architectures of Lipid Transport Systems for the Bacterial Outer Membrane.
Cell, 169, 2017
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