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6SAK
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BU of 6sak by Molmil
Structure of the OTULINcat C129A - SNX27 PDZ domain complex.
分子名称: GLYCEROL, SULFATE ION, Sorting nexin-27, ...
著者Elliott, P.R, Komander, D.
登録日2019-07-17
公開日2019-10-02
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Regulation of the endosomal SNX27-retromer by OTULIN.
Nat Commun, 10, 2019
4WZP
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BU of 4wzp by Molmil
Ser65 phosphorylated ubiquitin, major conformation
分子名称: SULFATE ION, ubiquitin
著者Wauer, T, Wagstaff, J, Freund, S.M.V, Komander, D.
登録日2014-11-20
公開日2015-01-14
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Ubiquitin Ser65 phosphorylation affects ubiquitin structure, chain assembly and hydrolysis.
Embo J., 34, 2015
3F89
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BU of 3f89 by Molmil
NEMO CoZi domain
分子名称: NF-kappa-B essential modulator
著者Rahighi, S, Ikeda, F, Kawasaki, M, Akutsu, M, Suzuki, N, Kato, R, Kensche, T, Uejima, T, Bloor, S, Komander, D, Randow, F, Wakatsuki, S, Dikic, I.
登録日2008-11-11
公開日2009-03-24
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
Cell(Cambridge,Mass.), 136, 2009
5JP3
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BU of 5jp3 by Molmil
Structure of Xanthomonas campestris effector protein XopD bound to ubiquitin
分子名称: Polyubiquitin-B, Xanthomonas outer protein D
著者Pruneda, J.N, Komander, D.
登録日2016-05-03
公開日2016-07-27
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献The Molecular Basis for Ubiquitin and Ubiquitin-like Specificities in Bacterial Effector Proteases.
Mol.Cell, 63, 2016
5JP1
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BU of 5jp1 by Molmil
Structure of Xanthomonas campestris effector protein XopD bound to tomato SUMO
分子名称: (4S,5S)-1,2-DITHIANE-4,5-DIOL, MALONATE ION, Small ubiquitin-related modifier, ...
著者Pruneda, J.N, Komander, D.
登録日2016-05-03
公開日2016-07-27
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The Molecular Basis for Ubiquitin and Ubiquitin-like Specificities in Bacterial Effector Proteases.
Mol.Cell, 63, 2016
4OYK
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BU of 4oyk by Molmil
Structure of HOIP PUB domain bound to OTULIN PIM
分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase RNF31, Ubiquitin thioesterase otulin
著者Elliott, P.R, Komander, D.
登録日2014-02-12
公開日2014-05-21
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.0001 Å)
主引用文献Molecular Basis and Regulation of OTULIN-LUBAC Interaction.
Mol.Cell, 54, 2014
4OYJ
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BU of 4oyj by Molmil
Structure of the apo HOIP PUB domain
分子名称: E3 ubiquitin-protein ligase RNF31, SULFATE ION
著者Elliott, P.R, Komander, D.
登録日2014-02-12
公開日2014-05-21
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Molecular Basis and Regulation of OTULIN-LUBAC Interaction.
Mol.Cell, 54, 2014
7OWD
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BU of 7owd by Molmil
Structure of CYLD CAP-Gly3 (467-552) bound to Ub; tetragonal space group
分子名称: Ubiquitin, Ubiquitin carboxyl-terminal hydrolase CYLD
著者Elliott, P.R, Komander, D.
登録日2021-06-17
公開日2021-10-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Regulation of CYLD activity and specificity by phosphorylation and ubiquitin-binding CAP-Gly domains.
Cell Rep, 37, 2021
7OWC
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BU of 7owc by Molmil
Structure of CYLD CAP-Gly3 (467-565) bound to Ub; orthorhobic space group
分子名称: Deubiquitinating enzyme CYLD, Ubiquitin-60S ribosomal protein L40
著者Elliott, P.R, Komander, D.
登録日2021-06-17
公開日2021-10-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Regulation of CYLD activity and specificity by phosphorylation and ubiquitin-binding CAP-Gly domains.
Cell Rep, 37, 2021
2ZVO
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BU of 2zvo by Molmil
NEMO CoZi domain in complex with diubiquitin in C2 space group
分子名称: NF-kappa-B essential modulator, UBC protein
著者Rahighi, S, Ikeda, F, Kawasaki, M, Akutsu, M, Suzuki, N, Kato, R, Kensche, T, Uejima, T, Bloor, S, Komander, D, Randow, F, Wakatsuki, S, Dikic, I.
登録日2008-11-12
公開日2009-03-24
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
Cell(Cambridge,Mass.), 136, 2009
6XAA
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BU of 6xaa by Molmil
SARS CoV-2 PLpro in complex with ubiquitin propargylamide
分子名称: Non-structural protein 3, Ubiquitin-propargylamide, ZINC ION
著者Klemm, T, Calleja, D.J, Richardson, L.W, Lechtenberg, B.C, Komander, D.
登録日2020-06-04
公開日2020-06-17
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Mechanism and inhibition of the papain-like protease, PLpro, of SARS-CoV-2.
Embo J., 39, 2020
6XA9
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BU of 6xa9 by Molmil
SARS CoV-2 PLpro in complex with ISG15 C-terminal domain propargylamide
分子名称: GLYCEROL, ISG15 CTD-propargylamide, Non-structural protein 3, ...
著者Klemm, T, Calleja, D.J, Richardson, L.W, Lechtenberg, B.C, Komander, D.
登録日2020-06-04
公開日2020-06-17
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Mechanism and inhibition of the papain-like protease, PLpro, of SARS-CoV-2.
Embo J., 39, 2020
2ZVN
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BU of 2zvn by Molmil
NEMO CoZi domain incomplex with diubiquitin in P212121 space group
分子名称: NF-kappa-B essential modulator, UBC protein
著者Rahighi, S, Ikeda, F, Kawasaki, M, Akutsu, M, Suzuki, N, Kato, R, Kensche, T, Uejima, T, Bloor, S, Komander, D, Randow, F, Wakatsuki, S, Dikic, I.
登録日2008-11-12
公開日2009-03-24
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
Cell(Cambridge,Mass.), 136, 2009
3VVV
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BU of 3vvv by Molmil
Skich domain of NDP52
分子名称: Calcium-binding and coiled-coil domain-containing protein 2
著者Akutsu, M, Muhlinen, N.V, Randow, F, Komander, D.
登録日2012-07-28
公開日2013-02-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献LC3C, bound selectively by a noncanonical LIR motif in NDP52, is required for antibacterial autophagy
Mol.Cell, 48, 2012
3VVW
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BU of 3vvw by Molmil
NDP52 in complex with LC3C
分子名称: Calcium-binding and coiled-coil domain-containing protein 2, Microtubule-associated proteins 1A/1B light chain 3C
著者Akutsu, M, Muhlinen, N.V, Randow, F, Komander, D.
登録日2012-07-28
公開日2013-02-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献LC3C, bound selectively by a noncanonical LIR motif in NDP52, is required for antibacterial autophagy
Mol.Cell, 48, 2012
8UYI
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BU of 8uyi by Molmil
Structure of ADP-bound and phosphorylated Pediculus humanus (Ph) PINK1 dimer
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Serine/threonine-protein kinase Pink1, ...
著者Gan, Z.Y, Kirk, N.S, Leis, A, Komander, D.
登録日2023-11-13
公開日2024-01-31
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3.13 Å)
主引用文献Interaction of PINK1 with nucleotides and kinetin.
Sci Adv, 10, 2024
8UYF
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BU of 8uyf by Molmil
Structure of nucleotide-free Pediculus humanus (Ph) PINK1 dimer
分子名称: Serine/threonine-protein kinase Pink1, mitochondrial
著者Gan, Z.Y, Kirk, N.S, Leis, A, Komander, D.
登録日2023-11-13
公開日2024-01-31
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献Interaction of PINK1 with nucleotides and kinetin.
Sci Adv, 10, 2024
8UYH
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BU of 8uyh by Molmil
Structure of AMP-PNP-bound Pediculus humanus (Ph) PINK1 dimer
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Serine/threonine-protein kinase Pink1, ...
著者Gan, Z.Y, Kirk, N.S, Leis, A, Komander, D.
登録日2023-11-13
公開日2024-01-31
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (2.84 Å)
主引用文献Interaction of PINK1 with nucleotides and kinetin.
Sci Adv, 10, 2024
6W9O
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BU of 6w9o by Molmil
Crystal structure of an OTU deubiquitinase from Wolbachia pipientis wMel
分子名称: ACETATE ION, OTU domain-containing protein wMelOTU
著者Schubert, A.F, Pruneda, J.N, Komander, D.
登録日2020-03-23
公開日2020-07-01
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Identification and characterization of diverse OTU deubiquitinases in bacteria.
Embo J., 39, 2020
6W9R
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BU of 6w9r by Molmil
Crystal structure of an OTU deubiquitinase from Wolbachia pipientis wMel bound to ubiquitin
分子名称: CITRATE ANION, OTU domain-containing protein wMelOTU, Ubiquitin
著者Schubert, A.F, Pruneda, J.N, Komander, D.
登録日2020-03-23
公開日2020-07-01
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Identification and characterization of diverse OTU deubiquitinases in bacteria.
Embo J., 39, 2020
6W9S
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BU of 6w9s by Molmil
Crystal structure of an OTU deubiquitinase from Escherichia albertii bound to ubiquitin
分子名称: FORMIC ACID, OTU domain-containing protein EschOTU, Ubiquitin
著者Schubert, A.F, Pruneda, J.N, Komander, D.
登録日2020-03-23
公開日2020-07-01
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Identification and characterization of diverse OTU deubiquitinases in bacteria.
Embo J., 39, 2020
1H1W
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BU of 1h1w by Molmil
High resolution crystal structure of the human PDK1 catalytic domain
分子名称: 3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE-1, ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, ...
著者Biondi, R.M, Komander, D, Thomas, C.C, Lizcano, J.M, Deak, M, Alessi, D.R, Van Aalten, D.M.F.
登録日2002-07-23
公開日2003-07-17
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献High Resolution Crystal Structure of the Human Pdk1 Catalytic Domain Defines the Regulatory Phosphopeptide Docking Site
Embo J., 21, 2003
3PHW
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BU of 3phw by Molmil
OTU Domain of Crimean Congo Hemorrhagic Fever Virus in complex with Ubiquitin
分子名称: ETHANAMINE, RNA-directed RNA polymerase L, Ubiquitin-40S ribosomal protein S27a
著者Akutsu, M, Ye, Y, Virdee, S, Komander, D.
登録日2010-11-04
公開日2011-02-02
最終更新日2025-03-26
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Molecular basis for ubiquitin and ISG15 cross-reactivity in viral ovarian tumor domains.
Proc.Natl.Acad.Sci.USA, 108, 2011
3PHX
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BU of 3phx by Molmil
OTU Domain of Crimean Congo Hemorrhagic Fever Virus in complex with ISG15
分子名称: ACETIC ACID, ETHANAMINE, RNA-directed RNA polymerase L, ...
著者Akutsu, M, Ye, Y, Virdee, S, Komander, D.
登録日2010-11-04
公開日2011-02-02
最終更新日2025-03-26
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Molecular basis for ubiquitin and ISG15 cross-reactivity in viral ovarian tumor domains.
Proc.Natl.Acad.Sci.USA, 108, 2011
3PHU
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BU of 3phu by Molmil
OTU Domain of Crimean Congo Hemorrhagic Fever Virus
分子名称: GLYCEROL, RNA-directed RNA polymerase L
著者Akutsu, M, Ye, Y, Virdee, S, Komander, D.
登録日2010-11-04
公開日2011-02-02
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Molecular basis for ubiquitin and ISG15 cross-reactivity in viral ovarian tumor domains.
Proc.Natl.Acad.Sci.USA, 108, 2011

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件を2025-07-09に公開中

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