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4H4X
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BU of 4h4x by Molmil
Crystal Structure of Ferredoxin reductase, BphA4 E175A/T176R/Q177G mutant (oxidized form)
分子名称: Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, ...
著者Nishizawa, A, Harada, A, Senda, M, Tachihara, Y, Muramatsu, D, Kishigami, S, Mori, S, Sugiyama, K, Senda, T, Kimura, S.
登録日2012-09-18
公開日2013-10-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
2E4Q
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BU of 2e4q by Molmil
Crystal structure of BphA3 (reduced form)
分子名称: Biphenyl dioxygenase ferredoxin subunit, FE2/S2 (INORGANIC) CLUSTER
著者Senda, M, Kishigami, S, Kimura, S, Ishida, T, Fukuda, M, Senda, T.
登録日2006-12-15
公開日2007-10-16
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
4H4R
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BU of 4h4r by Molmil
Crystal Structure of Ferredoxin reductase, BphA4 E175C/Q177G mutant (oxidized form)
分子名称: Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, ...
著者Nishizawa, A, Harada, A, Senda, M, Tachihara, Y, Muramatsu, D, Kishigami, S, Mori, S, Sugiyama, K, Senda, T, Kimura, S.
登録日2012-09-18
公開日2013-10-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
3W2E
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BU of 3w2e by Molmil
Crystal structure of oxidation intermediate (20 min) of NADH-cytochrome b5 reductase from pig liver
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, NADH-cytochrome b5 reductase 3, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Yamada, M, Tamada, T, Matsumoto, F, Shoyama, Y, Kimura, S, Kuroki, R, Miki, K.
登録日2012-11-28
公開日2013-07-17
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Elucidations of the catalytic cycle of NADH-cytochrome b5 reductase by X-ray crystallography: new insights into regulation of efficient electron transfer
J.Mol.Biol., 425, 2013
3W2F
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BU of 3w2f by Molmil
Crystal structure of oxidation intermediate (10 min) of NADH-cytochrome b5 reductase from pig liver
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, NADH-cytochrome b5 reductase 3, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Yamada, M, Tamada, T, Matsumoto, F, Shoyama, Y, Kimura, S, Kuroki, R, Miki, K.
登録日2012-11-28
公開日2013-07-17
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Elucidations of the catalytic cycle of NADH-cytochrome b5 reductase by X-ray crystallography: new insights into regulation of efficient electron transfer
J.Mol.Biol., 425, 2013
3W2G
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BU of 3w2g by Molmil
Crystal structure of fully reduced form of NADH-cytochrome b5 reductase from pig liver
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, NADH-cytochrome b5 reductase 3, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Yamada, M, Tamada, T, Matsumoto, F, Shoyama, Y, Kimura, S, Kuroki, R, Miki, K.
登録日2012-11-28
公開日2013-07-17
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Elucidations of the catalytic cycle of NADH-cytochrome b5 reductase by X-ray crystallography: new insights into regulation of efficient electron transfer
J.Mol.Biol., 425, 2013
3W2H
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BU of 3w2h by Molmil
Crystal structure of oxidation intermediate (1min) of NADH-cytochrome b5 reductase from pig liver
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, NADH-cytochrome b5 reductase 3, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Yamada, M, Tamada, T, Matsumoto, F, Shoyama, Y, Kimura, S, Kuroki, R, Miki, K.
登録日2012-11-28
公開日2013-07-17
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.752 Å)
主引用文献Elucidations of the catalytic cycle of NADH-cytochrome b5 reductase by X-ray crystallography: new insights into regulation of efficient electron transfer
J.Mol.Biol., 425, 2013
3W2I
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BU of 3w2i by Molmil
Crystal structure of re-oxidized form (60 min) of NADH-cytochrome b5 reductase from pig liver
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, NADH-cytochrome b5 reductase 3, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Yamada, M, Tamada, T, Matsumoto, F, Shoyama, Y, Kimura, S, Kuroki, R, Miki, K.
登録日2012-11-28
公開日2013-07-17
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Elucidations of the catalytic cycle of NADH-cytochrome b5 reductase by X-ray crystallography: new insights into regulation of efficient electron transfer
J.Mol.Biol., 425, 2013
3X35
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BU of 3x35 by Molmil
Crystal structure of the reduced form of the solubilized domain of porcine cytochrome b5 in form 2 crystal
分子名称: ACETATE ION, Cytochrome b5, PROTOPORPHYRIN IX CONTAINING FE
著者Hirano, Y, Kimura, S, Tamada, T.
登録日2015-01-14
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献High-resolution crystal structures of the solubilized domain of porcine cytochrome b5.
Acta Crystallogr.,Sect.D, 71, 2015
3X33
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BU of 3x33 by Molmil
Crystal structure of the oxidized form of the solubilized domain of porcine cytochrome b5 in form 2 crystal
分子名称: ACETATE ION, Cytochrome b5, PROTOPORPHYRIN IX CONTAINING FE
著者Hirano, Y, Kimura, S, Tamada, T.
登録日2015-01-14
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (0.93 Å)
主引用文献High-resolution crystal structures of the solubilized domain of porcine cytochrome b5.
Acta Crystallogr.,Sect.D, 71, 2015
3X34
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BU of 3x34 by Molmil
Crystal structure of the reduced form of the solubilized domain of porcine cytochrome b5 in form 1 crystal
分子名称: CALCIUM ION, Cytochrome b5, PROTOPORPHYRIN IX CONTAINING FE
著者Hirano, Y, Kimura, S, Tamada, T.
登録日2015-01-14
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (0.76 Å)
主引用文献High-resolution crystal structures of the solubilized domain of porcine cytochrome b5.
Acta Crystallogr.,Sect.D, 71, 2015
3X32
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BU of 3x32 by Molmil
Crystal structure of the oxidized form of the solubilized domain of porcine cytochrome b5 in form 1 crystal
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, Cytochrome b5, ...
著者Hirano, Y, Kimura, S, Tamada, T.
登録日2015-01-14
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (0.83 Å)
主引用文献High-resolution crystal structures of the solubilized domain of porcine cytochrome b5.
Acta Crystallogr.,Sect.D, 71, 2015
5B86
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BU of 5b86 by Molmil
Crystal structure of M-Sec
分子名称: Tumor necrosis factor alpha-induced protein 2
著者Yamashita, M, Sato, Y, Yamagata, A, Fukai, S.
登録日2016-06-12
公開日2016-10-12
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (3.017 Å)
主引用文献Distinct Roles for the N- and C-terminal Regions of M-Sec in Plasma Membrane Deformation during Tunneling Nanotube Formation.
Sci Rep, 6, 2016
7P6T
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BU of 7p6t by Molmil
Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form III)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-ethyl-2-(hydroxymethyl)propane-1,3-diol, Isoform Alpha of Pancreatic secretory granule membrane major glycoprotein GP2
著者Stsiapanava, A, Tunyasuvunakool, K, Jumper, J, de Sanctis, D, Jovine, L.
登録日2021-07-17
公開日2022-03-16
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH.
Nat.Struct.Mol.Biol., 29, 2022
7P6S
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BU of 7p6s by Molmil
Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form II)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Isoform Alpha of Pancreatic secretory granule membrane major glycoprotein GP2, pentane-1,5-diol
著者Stsiapanava, A, Tunyasuvunakool, K, Jumper, J, de Sanctis, D, Jovine, L.
登録日2021-07-17
公開日2022-03-16
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH.
Nat.Struct.Mol.Biol., 29, 2022
7P6R
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BU of 7p6r by Molmil
Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form I)
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Isoform Alpha of Pancreatic secretory granule membrane major glycoprotein GP2
著者Stsiapanava, A, Tunyasuvunakool, K, Jumper, J, de Sanctis, D, Jovine, L.
登録日2021-07-17
公開日2022-03-16
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH.
Nat.Struct.Mol.Biol., 29, 2022
2GQW
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BU of 2gqw by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, GLYCEROL, ...
著者Senda, T, Senda, M.
登録日2006-04-22
公開日2007-05-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2GR0
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BU of 2gr0 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (oxidized form, NAD+ complex)
分子名称: ADENOSINE-5'-DIPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, ferredoxin reductase
著者Senda, T, Senda, M.
登録日2006-04-22
公開日2007-05-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2GR2
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BU of 2gr2 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, FLAVIN-ADENINE DINUCLEOTIDE, ferredoxin reductase
著者Senda, T, Senda, M.
登録日2006-04-22
公開日2007-05-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2GR3
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BU of 2gr3 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, GLYCEROL, ...
著者Senda, T, Senda, M.
登録日2006-04-22
公開日2007-05-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2GR1
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BU of 2gr1 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (hydroquinone)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, ferredoxin reductase
著者Senda, T, Senda, M.
登録日2006-04-22
公開日2007-05-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
4Z2K
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BU of 4z2k by Molmil
Serratia marcescens Chitinase B complexed with macrolide inhibitor 32
分子名称: (1R,2R,3R,6R,7S,8S,9R,10R,12R,13S,17S)-3-ethyl-2,10-dihydroxy-2,6,8,10,12,15,15,17-octamethyl-5-oxo-9-(prop-2-yn-1-yloxy)-4,14,16-trioxabicyclo[11.3.1]heptadec-7-yl {7-[N'-(methylcarbamoyl)carbamimidamido]heptyl}carbamate, Chitinase B, GLYCEROL
著者Maita, N, Sugawara, A, Sunazuka, T.
登録日2015-03-30
公開日2015-07-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Creation of Customized Bioactivity within a 14-Membered Macrolide Scaffold: Design, Synthesis, and Biological Evaluation Using a Family-18 Chitinase
J.Med.Chem., 58, 2015
4Z2H
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BU of 4z2h by Molmil
Serratia marcescens Chitinase B complexed with macrolide inhibitor 29
分子名称: (1R,2R,3R,6R,7S,8S,9R,10R,12R,13S,17S)-3-ethyl-2,10-dihydroxy-2,6,8,10,12,15,15,17-octamethyl-5-oxo-9-(prop-2-yn-1-yloxy)-4,14,16-trioxabicyclo[11.3.1]heptadec-7-yl {2-[N'-(methylcarbamoyl)carbamimidamido]ethyl}carbamate, CHLORIDE ION, Chitinase B, ...
著者Maita, N, Sugawara, A, Sunazuka, T.
登録日2015-03-30
公開日2015-07-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Creation of Customized Bioactivity within a 14-Membered Macrolide Scaffold: Design, Synthesis, and Biological Evaluation Using a Family-18 Chitinase
J.Med.Chem., 58, 2015
4Z2I
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BU of 4z2i by Molmil
Serratia marcescens Chitinase B complexed with macrolide inhibitor 30
分子名称: (1R,2R,3R,6R,7S,8S,9R,10R,12R,13S,17S)-3-ethyl-2,10-dihydroxy-2,6,8,10,12,15,15,17-octamethyl-5-oxo-9-(prop-2-yn-1-yloxy)-4,14,16-trioxabicyclo[11.3.1]heptadec-7-yl {3-[N'-(methylcarbamoyl)carbamimidamido]propyl}carbamate, Chitinase B, GLYCEROL, ...
著者Maita, N, Sugawara, A, Sunazuka, T.
登録日2015-03-30
公開日2015-07-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Creation of Customized Bioactivity within a 14-Membered Macrolide Scaffold: Design, Synthesis, and Biological Evaluation Using a Family-18 Chitinase
J.Med.Chem., 58, 2015
4Z2G
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BU of 4z2g by Molmil
Serratia marcescens Chitinase B complexed with macrolide inhibitor 26
分子名称: (1R,2R,3R,6R,7S,8S,9R,10R,12R,13S,17S)-3-ethyl-2,10-dihydroxy-2,6,8,10,12,15,15,17-octamethyl-5-oxo-9-(prop-2-yn-1-yloxy)-4,14,16-trioxabicyclo[11.3.1]heptadec-7-yl {4-[N'-(methylcarbamoyl)carbamimidamido]butyl}carbamate, Chitinase B
著者Maita, N, Sugawara, A, Sunazuka, T.
登録日2015-03-30
公開日2015-07-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Creation of Customized Bioactivity within a 14-Membered Macrolide Scaffold: Design, Synthesis, and Biological Evaluation Using a Family-18 Chitinase
J.Med.Chem., 58, 2015

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