Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4Y1M
DownloadVisualize
BU of 4y1m by Molmil
An Escherichia coli yybP-ykoY Mn riboswitch in the Mn2+-free state
分子名称: E. coli yybP-ykoY riboswitch, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Price, I.R, Ke, A.
登録日2015-02-08
公開日2015-04-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Mn(2+)-Sensing Mechanisms of yybP-ykoY Orphan Riboswitches.
Mol.Cell, 57, 2015
4Y1I
DownloadVisualize
BU of 4y1i by Molmil
Lactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+
分子名称: BARIUM ION, GUANOSINE-5'-TRIPHOSPHATE, Lactococcus lactis yybP-ykoY riboswitch, ...
著者Price, I.R, Ke, A.
登録日2015-02-07
公開日2015-04-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Mn(2+)-Sensing Mechanisms of yybP-ykoY Orphan Riboswitches.
Mol.Cell, 57, 2015
5XVN
DownloadVisualize
BU of 5xvn by Molmil
E. far Cas1-Cas2/prespacer binary complex
分子名称: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (28-MER), ...
著者Xiao, Y, Ng, S, Nam, K.H, Ke, A.
登録日2017-06-28
公開日2017-10-04
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.
Nature, 550, 2017
8CTL
DownloadVisualize
BU of 8ctl by Molmil
IscB and wRNA bound to Target DNA (locked state)
分子名称: DNA non-target strand, DNA target strand, IscB, ...
著者Schuler, G.A, Hu, C, Ke, A.
登録日2022-05-16
公開日2022-06-15
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for RNA-guided DNA cleavage by IscB-omega RNA and mechanistic comparison with Cas9.
Science, 376, 2022
8CSZ
DownloadVisualize
BU of 8csz by Molmil
IscB and wRNA bound to Target DNA
分子名称: DNA non-target strand, DNA target strand, IscB, ...
著者Schuler, G.A, Hu, C, Ke, A.
登録日2022-05-13
公開日2022-06-15
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural basis for RNA-guided DNA cleavage by IscB-omega RNA and mechanistic comparison with Cas9.
Science, 376, 2022
8D9H
DownloadVisualize
BU of 8d9h by Molmil
gRAMP-TPR-CHAT match PFS target RNA(Craspase)
分子名称: CHAT domain protein, PHOSPHATE ION, RAMP superfamily protein, ...
著者Hu, C, Nam, K.H, Schuler, G, Ke, A.
登録日2022-06-09
公開日2023-06-14
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Craspase is a CRISPR RNA-guided, RNA-activated protease.
Science, 377, 2022
8D9F
DownloadVisualize
BU of 8d9f by Molmil
gRAMP-TPR-CHAT (Craspase)
分子名称: CHAT domain protein, RAMP superfamily protein, RNA (33-MER), ...
著者Hu, C, Nam, K.H, Schuler, G, Ke, A.
登録日2022-06-09
公開日2023-06-14
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (2.71 Å)
主引用文献Craspase is a CRISPR RNA-guided, RNA-activated protease.
Science, 377, 2022
8D97
DownloadVisualize
BU of 8d97 by Molmil
Apo gRAMP
分子名称: RAMP superfamily protein, RNA (42-MER), ZINC ION
著者Hu, C, Nam, K.H, Schuler, G, Ke, A.
登録日2022-06-09
公開日2023-06-14
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Craspase is a CRISPR RNA-guided, RNA-activated protease.
Science, 377, 2022
8D9I
DownloadVisualize
BU of 8d9i by Molmil
gRAMP non-matching PFS-with Mg
分子名称: RAMP superfamily protein, RNA (35-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*A)-3'), ...
著者Hu, C, Nam, K.H, Schuler, G, Ke, A.
登録日2022-06-09
公開日2023-06-14
実験手法ELECTRON MICROSCOPY (3.62 Å)
主引用文献Craspase is a CRISPR RNA-guided, RNA-activated protease.
Science, 377, 2022
8D9E
DownloadVisualize
BU of 8d9e by Molmil
gRAMP-match PFS target
分子名称: RAMP superfamily protein, RNA (36-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*UP*A)-3'), ...
著者Hu, C, Nam, K.H, Schuler, G, Ke, A.
登録日2022-06-09
公開日2023-06-14
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.76 Å)
主引用文献Craspase is a CRISPR RNA-guided, RNA-activated protease.
Science, 377, 2022
8D9G
DownloadVisualize
BU of 8d9g by Molmil
gRAMP-TPR-CHAT Non match PFS target RNA(Craspase)
分子名称: CHAT domain protein, RAMP superfamily protein, RNA (36-MER), ...
著者Hu, C, Nam, K.H, Schuler, G, Ke, A.
登録日2022-06-09
公開日2023-06-14
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (2.57 Å)
主引用文献Craspase is a CRISPR RNA-guided, RNA-activated protease.
Science, 377, 2022
7UTN
DownloadVisualize
BU of 7utn by Molmil
IscB and wRNA bound to Target DNA
分子名称: DNA non-target strand, DNA target strand, IscB, ...
著者Schuler, G.A, Hu, C, Ke, A.
登録日2022-04-27
公開日2022-06-15
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (2.74 Å)
主引用文献Structural basis for RNA-guided DNA cleavage by IscB-omega RNA and mechanistic comparison with Cas9.
Science, 376, 2022
8D8N
DownloadVisualize
BU of 8d8n by Molmil
gRAMP non-match PFS target RNA
分子名称: RAMP superfamily protein, RNA (35-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*AP*CP*A)-3'), ...
著者Hu, C, Nam, K.H, Schuler, G, Ke, A.
登録日2022-06-08
公開日2022-08-31
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Craspase is a CRISPR RNA-guided, RNA-activated protease.
Science, 377, 2022
7TRA
DownloadVisualize
BU of 7tra by Molmil
Cascade complex from type I-A CRISPR-Cas system
分子名称: CRISPR-associated endonuclease Cas3-HD, CRISPR-associated helicase Cas3, Cas11a, ...
著者Hu, C, Ni, D, Nam, K.H, Majumdar, S, McLean, J, Stahlberg, H, Terns, M, Ke, A.
登録日2022-01-28
公開日2022-08-10
最終更新日2022-08-17
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Allosteric control of type I-A CRISPR-Cas3 complexes and establishment as effective nucleic acid detection and human genome editing tools.
Mol.Cell, 82, 2022
7TR9
DownloadVisualize
BU of 7tr9 by Molmil
Cascade complex from type I-A CRISPR-Cas system
分子名称: CRISPR-associated endonuclease Cas3-HD, CRISPR-associated helicase Cas3, Cas11a, ...
著者Hu, C, Ni, D, Nam, K.H, Majumdar, S, McLean, J, Stahlberg, H, Terns, M, Ke, A.
登録日2022-01-28
公開日2022-08-10
最終更新日2022-08-24
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Allosteric control of type I-A CRISPR-Cas3 complexes and establishment as effective nucleic acid detection and human genome editing tools.
Mol.Cell, 82, 2022
7TR8
DownloadVisualize
BU of 7tr8 by Molmil
Cascade complex from type I-A CRISPR-Cas system
分子名称: CRISPR-associated endonuclease Cas3-HD, CRISPR-associated helicase Cas3, Cas11a, ...
著者Hu, C, Ni, D, Nam, K.H, Majumdar, S, McLean, J, Stahlberg, H, Terns, M, Ke, A.
登録日2022-01-28
公開日2022-08-10
最終更新日2022-08-17
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Allosteric control of type I-A CRISPR-Cas3 complexes and establishment as effective nucleic acid detection and human genome editing tools.
Mol.Cell, 82, 2022
7TR6
DownloadVisualize
BU of 7tr6 by Molmil
Cascade complex from type I-A CRISPR-Cas system
分子名称: Cas11a, Cas5a, Cas7a, ...
著者Hu, C, Ni, D, Nam, K.H, Majumdar, S, McLean, J, Stahlberg, H, Terns, M, Ke, A.
登録日2022-01-28
公開日2022-08-10
最終更新日2022-08-17
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Allosteric control of type I-A CRISPR-Cas3 complexes and establishment as effective nucleic acid detection and human genome editing tools.
Mol.Cell, 82, 2022
7UZ0
DownloadVisualize
BU of 7uz0 by Molmil
AntiT-tRNA flip UCCA
分子名称: AntiT-tRNA flip UCCA, MAGNESIUM ION, STRONTIUM ION
著者Price, I.R, Grigg, J.C, Ke, A.
登録日2022-05-07
公開日2022-06-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.03 Å)
主引用文献tRNA Fusion to Streamline RNA Structure Determination: Case Studies in Probing Aminoacyl-tRNA Sensing Mechanisms by the T-Box Riboswitch
Crystals, 12, 2022
7UQ6
DownloadVisualize
BU of 7uq6 by Molmil
tRNA T-box antiterminator fusion, construct #4
分子名称: BARIUM ION, POTASSIUM ION, RNA (86-MER)
著者Grigg, J.C, Price, I.R, Ke, A.
登録日2022-04-19
公開日2022-06-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.951 Å)
主引用文献tRNA Fusion to Streamline RNA Structure Determination: Case Studies in Probing Aminoacyl-tRNA Sensing Mechanisms by the T-Box Riboswitch
Crystals, 12, 2022
2XXA
DownloadVisualize
BU of 2xxa by Molmil
The Crystal Structure of the Signal Recognition Particle (SRP) in Complex with its Receptor(SR)
分子名称: 4.5S RNA, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, ...
著者Ataide, S.F, Schmitz, N, Shen, K, Ke, A, Shan, S, Doudna, J.A, Ban, N.
登録日2010-11-09
公開日2011-03-02
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.94 Å)
主引用文献The Crystal Structure of the Signal Recognition Particle in Complex with its Receptor.
Science, 331, 2011
4Y1J
DownloadVisualize
BU of 4y1j by Molmil
Lactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+
分子名称: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, STRONTIUM ION, ...
著者Price, I.R, Ke, A.
登録日2015-02-07
公開日2015-04-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献Mn(2+)-Sensing Mechanisms of yybP-ykoY Orphan Riboswitches.
Mol.Cell, 57, 2015
5XVO
DownloadVisualize
BU of 5xvo by Molmil
E. fae Cas1-Cas2/prespacer/target ternary complex revealing DNA sampling and half-integration states
分子名称: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (28-MER), ...
著者Xiao, Y, Ng, S, Nam, K.H, Ke, A.
登録日2017-06-28
公開日2017-10-04
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.
Nature, 550, 2017
5XVP
DownloadVisualize
BU of 5xvp by Molmil
E. fae Cas1-Cas2/prespacer/target ternary complex revealing the fully integrated states
分子名称: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (5'-D(P*TP*TP*CP*TP*CP*CP*GP*AP*G)-3'), ...
著者Xiao, Y, Ng, S, Nam, K.H, Ke, A.
登録日2017-06-28
公開日2017-10-04
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.
Nature, 550, 2017
5H9F
DownloadVisualize
BU of 5h9f by Molmil
Crystal structure of E. coli Cascade bound to a PAM-containing dsDNA target at 2.45 angstrom resolution.
分子名称: CRISPR system Cascade subunit CasA, CRISPR system Cascade subunit CasB, CRISPR system Cascade subunit CasC, ...
著者Hayes, R.P, Xiao, Y, Ding, F, van Erp, P.B.G, Rajashankar, K, Bailey, S, Wiedenheft, B, Ke, A.
登録日2015-12-28
公開日2016-02-17
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structural basis for promiscuous PAM recognition in type I-E Cascade from E. coli.
Nature, 530, 2016
5H9E
DownloadVisualize
BU of 5h9e by Molmil
Crystal structure of E. coli Cascade bound to a PAM-containing dsDNA target (32-nt spacer) at 3.20 angstrom resolution.
分子名称: CRISPR system Cascade subunit CasA, CRISPR system Cascade subunit CasB, CRISPR system Cascade subunit CasC, ...
著者Hayes, R.P, Xiao, Y, Ding, F, van Erp, P.B.G, Rajashankar, K, Bailey, S, Wiedenheft, B, Ke, A.
登録日2015-12-28
公開日2016-02-17
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.21 Å)
主引用文献Structural basis for promiscuous PAM recognition in type I-E Cascade from E. coli.
Nature, 530, 2016

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon