Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8J3T
DownloadVisualize
BU of 8j3t by Molmil
Complex structure of human cytomegalovirus protease and a non-covalent small-molecule ligand
分子名称: (4R)-1-[1-[(S)-[1-cyclopentyl-3-(2-methylphenyl)pyrazol-4-yl]-(4-methylphenyl)methyl]-2-oxidanylidene-pyridin-3-yl]-3-methyl-2-oxidanylidene-N-(3-oxidanylidene-2-azabicyclo[2.2.2]octan-4-yl)imidazolidine-4-carboxamide, Assemblin
著者Yoshida, S, Sako, Y, Nikaido, E, Ueda, T, Kozono, I, Ichihashi, Y, Nakahashi, A, Onishi, M, Yamatsu, Y, Kato, T, Nishikawa, J, Tachibana, Y.
登録日2023-04-18
公開日2023-11-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Peptide-to-Small Molecule: Discovery of Non-Covalent, Active-Site Inhibitors of beta-Herpesvirus Proteases.
Acs Med.Chem.Lett., 14, 2023
8HH2
DownloadVisualize
BU of 8hh2 by Molmil
F1 domain of FoF1-ATPase from Bacillus PS3,post-hyd,highATP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ...
著者Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
登録日2022-11-16
公開日2023-07-19
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
8HHC
DownloadVisualize
BU of 8hhc by Molmil
F1 domain of FoF1-ATPase from Bacillus PS3,post-hyd',lowATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ATP synthase subunit alpha, ...
著者Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
登録日2022-11-16
公開日2023-07-19
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
8HHB
DownloadVisualize
BU of 8hhb by Molmil
F1 domain of FoF1-ATPase from Bacillus PS3,step waiting,lowATP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ...
著者Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
登録日2022-11-16
公開日2023-07-19
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
8HHA
DownloadVisualize
BU of 8hha by Molmil
F1 domain of FoF1-ATPase from Bacillus PS3,120 degrees,lowATP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ...
著者Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
登録日2022-11-16
公開日2023-07-19
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
8HH1
DownloadVisualize
BU of 8hh1 by Molmil
FoF1-ATPase from Bacillus PS3, 81 degrees, highATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ATP synthase subunit alpha, ...
著者Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
登録日2022-11-16
公開日2023-07-19
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
8HH4
DownloadVisualize
BU of 8hh4 by Molmil
F1 domain of FoF1-ATPase from Bacillus PS3,101 degrees, highATP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ...
著者Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
登録日2022-11-16
公開日2023-07-19
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
8HH8
DownloadVisualize
BU of 8hh8 by Molmil
F1 domain of FoF1-ATPase from Bacillus PS3,post-hyd,lowATP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ...
著者Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
登録日2022-11-16
公開日2023-07-26
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
8HH9
DownloadVisualize
BU of 8hh9 by Molmil
F1 domain of FoF1-ATPase from Bacillus PS3, 90 degrees, low ATP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ...
著者Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
登録日2022-11-16
公開日2023-07-19
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
8HH6
DownloadVisualize
BU of 8hh6 by Molmil
F1 domain of FoF1-ATPase from Bacillus PS3,step waiting,highATP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ...
著者Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
登録日2022-11-16
公開日2023-07-26
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
8HH3
DownloadVisualize
BU of 8hh3 by Molmil
F1 domain of FoF1-ATPase from Bacillus PS3,90 degrees,highATP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ...
著者Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
登録日2022-11-16
公開日2023-07-19
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
8HH7
DownloadVisualize
BU of 8hh7 by Molmil
F1 domain of FoF1-ATPase from Bacillus PS3, 81 degrees, lowATP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ...
著者Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
登録日2022-11-16
公開日2023-07-26
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
8HH5
DownloadVisualize
BU of 8hh5 by Molmil
F1 domain of FoF1-ATPase from Bacillus PS3,120 degrees,highATP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ...
著者Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K.
登録日2022-11-16
公開日2023-07-26
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
7EHZ
DownloadVisualize
BU of 7ehz by Molmil
Structure of human NNMT in complex with macrocyclic peptide 2
分子名称: Nicotinamide N-methyltransferase, macrocyclic peptide 2
著者Hayashi, K, Mikamiyama, H, Uehara, S, Yamamoto, S, Cary, D, Nishikawa, J, Ueda, T, Ozasa, H, Mihara, K, Yoshimura, N, Kawai, T, Ono, T, Yamamoto, S, Fumoto, M.
登録日2021-03-30
公開日2021-12-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Macrocyclic Peptides as a Novel Class of NNMT Inhibitors: A SAR Study Aimed at Inhibitory Activity in the Cell.
Acs Med.Chem.Lett., 12, 2021
7EGU
DownloadVisualize
BU of 7egu by Molmil
Structure of human NNMT in complex with macrocyclic peptide X
分子名称: Nicotinamide N-methyltransferase, macrocyclic peptide X
著者Hayashi, K, Mikamiyama, H, Uehara, S, Yamamoto, S, Cary, D, Nishikawa, J, Ueda, T, Ozasa, H, Mihara, K, Yoshimura, N, Kawai, T, Ono, T, Yamamoto, S, Fumoto, M.
登録日2021-03-26
公開日2021-12-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Macrocyclic Peptides as a Novel Class of NNMT Inhibitors: A SAR Study Aimed at Inhibitory Activity in the Cell.
Acs Med.Chem.Lett., 12, 2021
7EI2
DownloadVisualize
BU of 7ei2 by Molmil
Structure of human NNMT in complex with macrocyclic peptide 8
分子名称: Nicotinamide N-methyltransferase, macrocyclic peptide 8
著者Hayashi, K, Mikamiyama, H, Uehara, S, Yamamoto, S, Cary, D, Nishikawa, J, Ueda, T, Ozasa, H, Mihara, K, Yoshimura, N, Kawai, T, Ono, T, Yamamoto, S, Fumoto, M.
登録日2021-03-30
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Macrocyclic Peptides as a Novel Class of NNMT Inhibitors: A SAR Study Aimed at Inhibitory Activity in the Cell.
Acs Med.Chem.Lett., 12, 2021
3WJ4
DownloadVisualize
BU of 3wj4 by Molmil
Crystal structure of PPARgamma ligand binding domain in complex with tributyltin
分子名称: Peroxisome proliferator-activated receptor gamma, tributylstannanyl
著者Harada, S, Hiromori, Y, Fukakusa, S, Kawahara, K, Nakamura, S, Noda, M, Uchiyama, S, Fukui, K, Nishikawa, J, Nagase, H, Kobayashi, Y, Ohkubo, T, Yoshida, T, Nakanishi, T.
登録日2013-10-04
公開日2014-10-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
3WJ5
DownloadVisualize
BU of 3wj5 by Molmil
Crystal structure of PPARgamma ligand binding domain in complex with triphenyltin
分子名称: Peroxisome proliferator-activated receptor gamma, triphenylstannanyl
著者Harada, S, Hiromori, Y, Fukakusa, S, Kawahara, K, Nakamura, S, Noda, M, Uchiyama, S, Fukui, K, Nishikawa, J, Nagase, H, Kobayashi, Y, Ohkubo, T, Yoshida, T, Nakanishi, T.
登録日2013-10-04
公開日2014-10-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
7XK7
DownloadVisualize
BU of 7xk7 by Molmil
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, with korormicin
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ...
著者Kishikawa, J, Ishikawa, M, Masuya, T, Murai, M, Barquera, B, Miyoshi, H.
登録日2022-04-19
公開日2022-07-20
最終更新日2022-08-10
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Cryo-EM structures of Na + -pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae.
Nat Commun, 13, 2022
7XK4
DownloadVisualize
BU of 7xk4 by Molmil
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, state 2
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ...
著者Kishikawa, J, Ishikawa, M, Masuya, T, Murai, M, Barquera, B, Miyoshi, H.
登録日2022-04-19
公開日2022-07-20
最終更新日2022-08-10
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Cryo-EM structures of Na + -pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae.
Nat Commun, 13, 2022
7XK5
DownloadVisualize
BU of 7xk5 by Molmil
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, state 3
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ...
著者Kishikawa, J, Ishikawa, M, Masuya, T, Murai, M, Barquera, B, Miyoshi, H.
登録日2022-04-19
公開日2022-07-20
最終更新日2022-08-10
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Cryo-EM structures of Na + -pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae.
Nat Commun, 13, 2022
7XK6
DownloadVisualize
BU of 7xk6 by Molmil
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, with aurachin D-42
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Aurachin D, CALCIUM ION, ...
著者Kishikawa, J, Ishikawa, M, Masuya, T, Murai, M, Barquera, B, Miyoshi, H.
登録日2022-04-19
公開日2022-07-20
最終更新日2022-08-10
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Cryo-EM structures of Na + -pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae.
Nat Commun, 13, 2022
7XK3
DownloadVisualize
BU of 7xk3 by Molmil
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, state 1
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ...
著者Kishikawa, J, Ishikawa, M, Masuya, T, Murai, M, Barquera, B, Miyoshi, H.
登録日2022-04-19
公開日2022-07-20
最終更新日2022-08-10
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Cryo-EM structures of Na + -pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae.
Nat Commun, 13, 2022
8JJE
DownloadVisualize
BU of 8jje by Molmil
RBD of SARS-CoV2 spike protein with ACE2 decoy
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
著者Kishikawa, J, Hirose, M, Kato, T, Okamoto, T.
登録日2023-05-30
公開日2023-12-27
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献An inhaled ACE2 decoy confers protection against SARS-CoV-2 infection in preclinical models.
Sci Transl Med, 15, 2023
6LY8
DownloadVisualize
BU of 6ly8 by Molmil
V/A-ATPase from Thermus thermophilus, the soluble domain, including V1, d, two EG stalks, and N-terminal domain of a-subunit.
分子名称: ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ...
著者Kishikawa, J, Nakanishi, A, Furuta, A, Kato, T, Namba, K, Tamakoshi, M, Mitsuoka, K, Yokoyama, K.
登録日2020-02-13
公開日2020-09-09
最終更新日2020-09-30
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Mechanical inhibition of isolated V o from V/A-ATPase for proton conductance.
Elife, 9, 2020

221716

件を2024-06-26に公開中

PDB statisticsPDBj update infoContact PDBjnumon