8U60
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8U5K
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1ZL3
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![BU of 1zl3 by Molmil](/molmil-images/mine/1zl3) | Coupling of active site motions and RNA binding | 分子名称: | 5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*UP*(FLO) UP*CP*GP*AP*UP*CP*CP*CP*GP*UP*UP*GP*C)-3', SULFATE ION, tRNA pseudouridine synthase B | 著者 | Hoang, C, Hamilton, C.S, Mueller, E.G, Ferre-D'Amare, A.R. | 登録日 | 2005-05-05 | 公開日 | 2005-08-09 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Precursor complex structure of pseudouridine synthase TruB suggests coupling of active site perturbations to an RNA-sequestering peripheral protein domain Protein Sci., 14, 2005
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2APO
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![BU of 2apo by Molmil](/molmil-images/mine/2apo) | Crystal Structure of the Methanococcus jannaschii Cbf5 Nop10 Complex | 分子名称: | POTASSIUM ION, Probable tRNA pseudouridine synthase B, Ribosome biogenesis protein Nop10, ... | 著者 | Hamma, T, Reichow, S.L, Varani, G, Ferre-D'Amare, A.R. | 登録日 | 2005-08-16 | 公開日 | 2005-11-15 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | 主引用文献 | The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs. Nat.Struct.Mol.Biol., 12, 2005
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3K1V
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3K0J
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![BU of 3k0j by Molmil](/molmil-images/mine/3k0j) | Crystal structure of the E. coli ThiM riboswitch in complex with thiamine pyrophosphate and the U1A crystallization module | 分子名称: | MAGNESIUM ION, RNA (87-MER), THIAMINE DIPHOSPHATE, ... | 著者 | Kulshina, N, Edwards, T.E, Ferre-D'Amare, A.R. | 登録日 | 2009-09-24 | 公開日 | 2009-12-22 | 最終更新日 | 2024-02-21 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch. Rna, 16, 2010
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3IWN
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![BU of 3iwn by Molmil](/molmil-images/mine/3iwn) | Co-crystal structure of a bacterial c-di-GMP riboswitch | 分子名称: | 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), C-di-GMP riboswitch, U1 small nuclear ribonucleoprotein A | 著者 | Kulshina, N, Baird, N.J, Ferre-D'Amare, A.R. | 登録日 | 2009-09-02 | 公開日 | 2009-11-10 | 最終更新日 | 2024-02-21 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch. Nat.Struct.Mol.Biol., 16, 2009
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2Z74
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![BU of 2z74 by Molmil](/molmil-images/mine/2z74) | T. tengcongensis glmS ribozyme bound to glucose-6-phosphate | 分子名称: | 6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, glmS ribozyme RNA, ... | 著者 | Klein, D.J, Wilkinson, S.R, Been, M.D, Ferre-D'Amare, A.R. | 登録日 | 2007-08-15 | 公開日 | 2007-09-04 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme J.Mol.Biol., 373, 2007
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3B4A
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2Z75
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![BU of 2z75 by Molmil](/molmil-images/mine/2z75) | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate | 分子名称: | 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, glmS ribozyme RNA, ... | 著者 | Klein, D.J, Wilkinson, S.R, Been, M.D, Ferre-D'Amare, A.R. | 登録日 | 2007-08-15 | 公開日 | 2007-09-04 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme J.Mol.Biol., 373, 2007
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3B4C
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3B4B
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3CUL
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![BU of 3cul by Molmil](/molmil-images/mine/3cul) | Aminoacyl-tRNA synthetase ribozyme | 分子名称: | MAGNESIUM ION, POTASSIUM ION, RNA (92-MER), ... | 著者 | Xiao, H, Murakami, H, Suga, H, Ferre-D'Amare, A.R. | 登録日 | 2008-04-16 | 公開日 | 2008-06-24 | 最終更新日 | 2021-10-20 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme. Nature, 454, 2008
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4TZW
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![BU of 4tzw by Molmil](/molmil-images/mine/4tzw) | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and replacing Mg2+ with Sr2+ post crystallization | 分子名称: | Ribosome-associated protein L7Ae-like, STRONTIUM ION, T-box Stem I, ... | 著者 | Zhang, J, Ferre-D'Amare, A.R. | 登録日 | 2014-07-11 | 公開日 | 2014-09-10 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (4.671 Å) | 主引用文献 | Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration. Structure, 22, 2014
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8F5G
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![BU of 8f5g by Molmil](/molmil-images/mine/8f5g) | NusG-RNA complex | 分子名称: | DI(HYDROXYETHYL)ETHER, RNA, Transcription termination/antitermination protein NusG | 著者 | Elghondakly, A.T, Ferre-D'Amare, A.R. | 登録日 | 2022-11-14 | 公開日 | 2023-11-22 | 最終更新日 | 2024-07-17 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Major-groove sequence-specific RNA recognition by LoaP, a paralog of transcription elongation factor NusG. Structure, 2024
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8FI8
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8FHZ
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![BU of 8fhz by Molmil](/molmil-images/mine/8fhz) | Structure of Lettuce aptamer bound to DFHO | 分子名称: | (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-12-15 | 公開日 | 2023-05-10 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
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8FHV
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![BU of 8fhv by Molmil](/molmil-images/mine/8fhv) | Structure of Lettuce aptamer bound to DFHBI-1T with thallium I ions | 分子名称: | (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-12-15 | 公開日 | 2023-05-10 | 最終更新日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
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3CUN
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![BU of 3cun by Molmil](/molmil-images/mine/3cun) | Aminoacyl-tRNA synthetase ribozyme | 分子名称: | COBALT (II) ION, MAGNESIUM ION, POTASSIUM ION, ... | 著者 | Xiao, H, Murakami, H, Suga, H, Ferre-D'Amare, A.R. | 登録日 | 2008-04-16 | 公開日 | 2008-06-24 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme. Nature, 454, 2008
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3FTM
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8FI2
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![BU of 8fi2 by Molmil](/molmil-images/mine/8fi2) | Structure of Lettuce C20T bound to DFHBI-1T | 分子名称: | (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-12-15 | 公開日 | 2023-05-10 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
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8FI1
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![BU of 8fi1 by Molmil](/molmil-images/mine/8fi1) | Structure of Lettuce C20G bound to DFHO | 分子名称: | (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-12-15 | 公開日 | 2023-05-10 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
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8FI0
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8FI7
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![BU of 8fi7 by Molmil](/molmil-images/mine/8fi7) | Structure of Lettuce C20T bound to DFHO | 分子名称: | (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-12-15 | 公開日 | 2023-05-10 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
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8FHX
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![BU of 8fhx by Molmil](/molmil-images/mine/8fhx) | Structure of Lettuce aptamer bound to DFHBI-1T | 分子名称: | (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... | 著者 | Passalacqua, L.F.M, Ferre-D'Amare, A.R. | 登録日 | 2022-12-15 | 公開日 | 2023-05-10 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
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