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5XEV
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Crystal Structure of a novel Xaa-Pro dipeptidase from Deinococcus radiodurans
分子名称: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
著者Are, V.N, Kumar, A, Ghosh, B, Makde, R.D.
登録日2017-04-06
公開日2017-10-18
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal structure of a novel prolidase from Deinococcus radiodurans identifies new subfamily of bacterial prolidases.
Proteins, 85, 2017
5X49
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BU of 5x49 by Molmil
Crystal Structure of Human mitochondrial X-prolyl Aminopeptidase (XPNPEP3)
分子名称: (2S,3R)-3-amino-2-hydroxy-4-phenylbutanoic acid, 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, ...
著者Singh, R, Kumar, A, Ghosh, B, Jamdar, S, Makde, R.D.
登録日2017-02-10
公開日2017-05-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structure of the human aminopeptidase XPNPEP3 and comparison of its in vitro activity with Icp55 orthologs: Insights into diverse cellular processes.
J. Biol. Chem., 292, 2017
5CE6
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BU of 5ce6 by Molmil
N-terminal domain of FACT complex subunit SPT16 from Cicer arietinum (chickpea)
分子名称: ACETATE ION, FACT-Spt16, POTASSIUM ION, ...
著者Are, V.N, Ghosh, B, Kumar, A, Makde, R.
登録日2015-07-06
公開日2016-04-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure and dynamics of Spt16N-domain of FACT complex from Cicer arietinum.
Int.J.Biol.Macromol., 88, 2016
8V38
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BU of 8v38 by Molmil
Structure of the human systemic RNAi defective transmembrane protein 1 (hSIDT1)
分子名称: SID1 transmembrane family member 1,RNA-directed RNA polymerase L
著者Navratna, V, Kumar, A, Rana, J.K, Mosalaganti, S.
登録日2023-11-27
公開日2024-06-26
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structure of the human systemic RNAi defective transmembrane protein 1 (hSIDT1) reveals the conformational flexibility of its lipid binding domain.
Biorxiv, 2024
5YZO
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BU of 5yzo by Molmil
Crystal structure of S9 peptidase mutant (S514A) from Deinococcus radiodurans R1
分子名称: Acyl-peptide hydrolase, putative, DIMETHYL SULFOXIDE, ...
著者Yadav, P, Jamdar, S.N, Kumar, A, Ghosh, B, Makde, R.D.
登録日2017-12-15
公開日2018-11-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
5YZN
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BU of 5yzn by Molmil
Crystal structure of S9 peptidase (active form) from Deinococcus radiodurans R1
分子名称: Acyl-peptide hydrolase, putative
著者Yadav, P, Jamdar, S.N, Kumar, A, Ghosh, B, Makde, R.D.
登録日2017-12-15
公開日2018-11-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
5Z40
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BU of 5z40 by Molmil
Crystal structure of pyrrolidone carboxylate peptidase I from Deionococcus radiodurans R1
分子名称: Pyrrolidone-carboxylate peptidase
著者Agrawal, R, Kumar, A, Makde, R.D.
登録日2018-01-09
公開日2019-01-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.837 Å)
主引用文献Crystal structures of pyrrolidone carboxylate peptidase I from Deionococcus radiodurans reveal the mechanism of L-pyroglutamate recognition
To Be Published
7F7D
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BU of 7f7d by Molmil
Crystal structure of Non-specific class-C acid phosphatase from Sphingobium sp. RSMS bound to Adenosine at pH 5.5
分子名称: ADENOSINE, Acid phosphatase, DI(HYDROXYETHYL)ETHER, ...
著者Gaur, N.K, Kumar, A, Sunder, S, Mukhopadhyaya, R, Makde, R.D.
登録日2021-06-28
公開日2022-07-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Non-Specific Class-c acidphosphatase from Sphingobium sp. RSMS
To Be Published
7F7A
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BU of 7f7a by Molmil
Crystal structure of Non-specific class-C acid phosphatase from Sphingobium sp. RSMS bound to Adenine at pH 9
分子名称: ADENINE, Acid phosphatase, MAGNESIUM ION
著者Gaur, N.K, Kumar, A, Sunder, S, Mukhopadhyaya, R, Makde, R.D.
登録日2021-06-28
公開日2022-07-06
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Non-Specific Class-c acidphosphatase from Sphingobium sp. RSMS
To Be Published
7F7B
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BU of 7f7b by Molmil
Crystal structure of Non-specific class-C acid phosphatase from Sphingobium sp. RSMS bound to BIS-TRIS at pH 5.5
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Acid phosphatase, MAGNESIUM ION, ...
著者Gaur, N.K, Kumar, A, Sunder, S, Mukhopadhyaya, R, Makde, R.D.
登録日2021-06-28
公開日2022-07-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献Non-Specific Class-c acidphosphatase from Sphingobium sp. RSMS
To Be Published
7F7C
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BU of 7f7c by Molmil
Crystal structure of Non-specific class-C acid phosphatase from Sphingobium sp. RSMS bound to Adenosine at pH 5.5
分子名称: ADENOSINE, Acid phosphatase, MAGNESIUM ION, ...
著者Gaur, N.K, Kumar, A, Sunder, S, Mukhopadhyaya, R, Makde, R.D.
登録日2021-06-28
公開日2022-07-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Non-Specific Class-c acidphosphatase from Sphingobium sp. RSMS
To Be Published
7FCR
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BU of 7fcr by Molmil
Crystal structure of the N-terminal domain of mutants of Human Apolipoprotein-E (ApoE)
分子名称: Apolipoprotein E, SODIUM ION
著者Cherakara, S, Kumar, A, Garai, K, Ghosh, B.
登録日2021-07-15
公開日2022-07-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal structure of the N-terminal domain of mutants of Human Apolipoprotein-E (ApoE)
To be published
7FCS
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BU of 7fcs by Molmil
Crystal structure of the N-terminal domain of mutants of Human Apolipoprotein-E (ApoE)
分子名称: Apolipoprotein E, SODIUM ION
著者Cherakara, S, Kumar, A, Garai, K, Ghosh, B.
登録日2021-07-15
公開日2022-07-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of the N-terminal domain of mutants of Human Apolipoprotein-E (ApoE)
To be published
2NDE
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BU of 2nde by Molmil
Solution Structure of Mutant of BMAP-28(1-18)
分子名称: Cathelicidin-5
著者Agadi, N, Kumar, A.
登録日2016-05-12
公開日2017-09-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure, Function And Membrane Interaction Studies of Two Synthetic Peptides Using Solution And Solid State NMR
To be Published
2NDC
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BU of 2ndc by Molmil
Solution Structure of BMAP-28(1-18)
分子名称: Cathelicidin-5
著者Agadi, N, Kumar, A.
登録日2016-05-12
公開日2017-09-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure, Function And Membrane Interaction Studies Of Two Synthetic Antimicrobial Peptides Using Solution And Solid State NMR
To be Published
2QF8
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BU of 2qf8 by Molmil
Crystal structure of the complex of Buffalo Secretory Glycoprotein with tetrasaccharide at 2.8A resolution
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase-3-like protein 1
著者Singh, A.K, Jain, R, Sinha, M, Kumar, A, Singh, N, Sharma, S, Kaur, P, Singh, T.P.
登録日2007-06-27
公開日2007-07-10
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of the complex of Buffalo Secretory Glycoprotein with Tetrasaccharide at 2.8A resolution
To be Published
2C8V
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BU of 2c8v by Molmil
Insights into the role of nucleotide-dependent conformational change in nitrogenase catalysis: Structural characterization of the nitrogenase Fe protein Leu127 deletion variant with bound MgATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, FE2/S2 (INORGANIC) CLUSTER, MAGNESIUM ION, ...
著者Sen, S, Krishnakumar, A, McClead, J, Johnson, M.K, Seefeldt, L.C, Szilagyi, R.K, Peters, J.W.
登録日2005-12-08
公開日2006-06-01
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Insights Into the Role of Nucleotide-Dependent Conformational Change in Nitrogenase Catalysis: Structural Characterization of the Nitrogenase Fe Protein Leu127 Deletion Variant with Bound Mgatp.
J.Inorg.Biochem., 100, 2006
5BOK
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BU of 5bok by Molmil
Ferredoxin component of 3-nitrotoluene dioxygenase from Diaphorobacter sp. strain DS2
分子名称: FE (III) ION, FE2/S2 (INORGANIC) CLUSTER, Ferredoxin
著者Ramaswamy, S, Kumari, A, Singh, D, Gurunath, R.
登録日2015-05-27
公開日2016-07-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Ferredoxin component of 3-nitrotoluene dioxygenase from Diaphorobacter sp. strain DS2
To Be Published
8ILU
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BU of 8ilu by Molmil
Crystal structure of mouse Galectin-3 in complex with small molecule inhibitor
分子名称: (2R,3R,4R,5R,6S)-2-(hydroxymethyl)-6-[2-(2-methyl-1,3-benzothiazol-6-yl)-1,2,4-triazol-3-yl]-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxane-3,5-diol, Galectin-3, SODIUM ION, ...
著者Kumar, A, Jinal, S, Raman, S, Ghosh, K.
登録日2023-03-04
公開日2024-03-06
最終更新日2024-09-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Identification of benzothiazole derived monosaccharides as potent, selective, and orally bioavailable inhibitors of human and mouse galectin-3; a rare example of using a S···O binding interaction for drug design.
Bioorg.Med.Chem., 101, 2024
3U21
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BU of 3u21 by Molmil
Crystal structure of a Fragment of Nuclear factor related to kappa-B-binding protein (residues 370-495) (NFRKB) from Homo sapiens at 2.18 A resolution
分子名称: Nuclear factor related to kappa-B-binding protein, SODIUM ION
著者Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology, Partnership for Stem Cell Biology (STEMCELL)
登録日2011-09-30
公開日2011-11-02
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Structure of a Novel Winged-Helix Like Domain from Human NFRKB Protein.
Plos One, 7, 2012
4V3J
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BU of 4v3j by Molmil
Structural and functional characterization of a novel monotreme- specific protein from the milk of the platypus
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, MONOTREME LACTATING PROTEIN
著者Kumar, A, Newman, J, Polekina, G, Adams, T.E, Sharp, J.A, Peat, T.S, Nicholas, K.R.
登録日2014-10-20
公開日2016-01-20
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Structural characterization of a novel monotreme-specific protein with antimicrobial activity from the milk of the platypus.
Acta Crystallogr F Struct Biol Commun, 74, 2018
2OOK
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BU of 2ook by Molmil
Crystal structure of a protein with unknown function (YP_749275.1) from Shewanella Frigidimarina NCIMB 400 at 1.80 A resolution
分子名称: 1,2-ETHANEDIOL, Hypothetical protein
著者Joint Center for Structural Genomics (JCSG)
登録日2007-01-25
公開日2007-02-06
最終更新日2023-01-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Open and closed conformations of two SpoIIAA-like proteins (YP_749275.1 and YP_001095227.1) provide insights into membrane association and ligand binding.
Acta Crystallogr.,Sect.F, 66, 2010
2Q3L
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BU of 2q3l by Molmil
CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN FROM DUF3478 FAMILY WITH A SPOIIAA-LIKE FOLD (SHEW_3102) FROM SHEWANELLA LOIHICA PV-4 AT 2.25 A RESOLUTION
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, SODIUM ION, ...
著者Joint Center for Structural Genomics (JCSG)
登録日2007-05-30
公開日2007-06-12
最終更新日2023-01-25
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Open and closed conformations of two SpoIIAA-like proteins (YP_749275.1 and YP_001095227.1) provide insights into membrane association and ligand binding.
Acta Crystallogr.,Sect.F, 66, 2010
7O4O
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BU of 7o4o by Molmil
Structure of Staphylococcus aureus m1A22-tRNA methyltransferase in complex with S-adenosylhomocysteine
分子名称: GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, tRNA (Adenine(22)-N(1))-methyltransferase
著者Gloster, T.M, Czekster, C.M, da Silva, R.G.
登録日2021-04-06
公開日2022-04-06
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Structure, dynamics, and molecular inhibition of the Staphylococcus aureus m 1 A22-tRNA methyltransferase TrmK.
J.Biol.Chem., 298, 2022
7O4N
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Structure of Staphylococcus aureus m1A22-tRNA methyltransferase in complex with S-adenosylmethionine
分子名称: GLYCEROL, S-ADENOSYLMETHIONINE, tRNA (Adenine(22)-N(1))-methyltransferase
著者Gloster, T.M, Czekster, C.M, da Silva, R.G.
登録日2021-04-06
公開日2022-04-20
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structure, dynamics, and molecular inhibition of the Staphylococcus aureus m 1 A22-tRNA methyltransferase TrmK.
J.Biol.Chem., 298, 2022

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