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7D46
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eIF2B apo
分子名称: Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, Translation initiation factor eIF-2B subunit delta, ...
著者Kashiwagi, K, Ito, T.
登録日2020-09-22
公開日2020-12-09
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献ISRIB Blunts the Integrated Stress Response by Allosterically Antagonising the Inhibitory Effect of Phosphorylated eIF2 on eIF2B.
Mol.Cell, 81, 2021
7VLK
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BU of 7vlk by Molmil
eIF2B-SFSV NSs C2-imposed
分子名称: Non-structural protein NS-S, Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, ...
著者Kashiwagi, K, Ito, T.
登録日2021-10-04
公開日2021-12-01
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (2.27 Å)
主引用文献eIF2B-capturing viral protein NSs suppresses the integrated stress response.
Nat Commun, 12, 2021
1WD5
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BU of 1wd5 by Molmil
Crystal structure of TT1426 from Thermus thermophilus HB8
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, hypothetical protein TT1426
著者Shibata, R, Kukimoto-Niino, M, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-11
公開日2004-11-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a predicted phosphoribosyltransferase (TT1426) from Thermus thermophilus HB8 at 2.01 A resolution
Protein Sci., 14, 2005
1V4B
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BU of 1v4b by Molmil
The crystal structure of AzoR (Azo Reductase) from Escherichia coli: Oxidized form
分子名称: 1,2-ETHANEDIOL, FLAVIN MONONUCLEOTIDE, ISOPROPYL ALCOHOL, ...
著者Ito, K, Tanokura, M.
登録日2003-11-12
公開日2005-01-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Three-dimensional structure of AzoR from Escherichia coli. An oxidereductase conserved in microorganisms
J.Biol.Chem., 281, 2006
4ZLF
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Cellobionic acid phosphorylase - cellobionic acid complex
分子名称: 4-O-beta-D-glucopyranosyl-D-gluconic acid, CHLORIDE ION, GLYCEROL, ...
著者Nam, Y.W, Arakawa, T, Fushinobu, S.
登録日2015-05-01
公開日2015-06-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes.
J.Biol.Chem., 290, 2015
4ZLE
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Cellobionic acid phosphorylase - ligand free structure
分子名称: CHLORIDE ION, GLYCEROL, Putative b-glycan phosphorylase, ...
著者Nam, Y.W, Arakawa, T, Fushinobu, S.
登録日2015-05-01
公開日2015-06-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes.
J.Biol.Chem., 290, 2015
4ZLG
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Cellobionic acid phosphorylase - gluconic acid complex
分子名称: CHLORIDE ION, D-gluconic acid, D-glucono-1,5-lactone, ...
著者Nam, Y.W, Arakawa, T, Fushinobu, S.
登録日2015-05-01
公開日2015-06-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes.
J.Biol.Chem., 290, 2015
5B0S
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Beta-1,2-Mannobiose phosphorylase from Listeria innocua - beta-1,2-mannotriose complex
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, Lin0857 protein, ...
著者Tsuda, T, Arakawa, T, Fushinobu, S.
登録日2015-11-02
公開日2015-12-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Characterization and crystal structure determination of beta-1,2-mannobiose phosphorylase from Listeria innocua
Febs Lett., 589, 2015
4ZLI
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Cellobionic acid phosphorylase - 3-O-beta-D-glucopyranosyl-alpha-D-glucopyranuronic acid complex
分子名称: CHLORIDE ION, GLYCEROL, Putative b-glycan phosphorylase, ...
著者Nam, Y.W, Arakawa, T, Fushinobu, S.
登録日2015-05-01
公開日2015-06-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes.
J.Biol.Chem., 290, 2015
7XGA
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BU of 7xga by Molmil
NMR strucutre of chimeric protein for model of PHD-Stella complex
分子名称: Chimera of E3 ubiquitin-protein ligase UHRF1 and Developmental pluripotency-associated protein 3, ZINC ION
著者Kobayashi, N, Konuma, T, Arita, K.
登録日2022-04-04
公開日2022-12-07
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for the unique multifaceted interaction of DPPA3 with the UHRF1 PHD finger.
Nucleic Acids Res., 50, 2022
5B0R
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BU of 5b0r by Molmil
Beta-1,2-Mannobiose phosphorylase from Listeria innocua - beta-1,2-mannobiose complex
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, Lin0857 protein, ...
著者Tsuda, T, Arakawa, T, Fushinobu, S.
登録日2015-11-02
公開日2015-12-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Characterization and crystal structure determination of beta-1,2-mannobiose phosphorylase from Listeria innocua
Febs Lett., 589, 2015
5B0Q
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beta-1,2-Mannobiose phosphorylase from Listeria innocua - mannose complex
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Lin0857 protein, SULFATE ION, ...
著者Tsuda, T, Arakawa, T, Fushinobu, S.
登録日2015-11-02
公開日2015-12-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Characterization and crystal structure determination of beta-1,2-mannobiose phosphorylase from Listeria innocua
Febs Lett., 589, 2015
5B6Q
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BU of 5b6q by Molmil
Crystal structure of monomeric cytochrome c5 from Shewanella violacea
分子名称: HEME C, IMIDAZOLE, Soluble cytochrome cA
著者Masanari, M, Fujii, S, Kawahara, K, Oki, H, Tsujino, H, Maruno, T, Kobayashi, Y, Ohkubo, T, Nishiyama, M, Harada, Y, Wakai, S, Sambongi, Y.
登録日2016-06-01
公開日2016-10-19
最終更新日2019-10-02
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Comparative study on stabilization mechanism of monomeric cytochrome c5 from deep-sea piezophilic Shewanella violacea
Biosci.Biotechnol.Biochem., 2016
5B04
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BU of 5b04 by Molmil
Crystal structure of the eukaryotic translation initiation factor 2B from Schizosaccharomyces pombe
分子名称: PHOSPHATE ION, Probable translation initiation factor eIF-2B subunit beta, Probable translation initiation factor eIF-2B subunit delta, ...
著者Kashiwagi, K, Ito, T, Yokoyama, S.
登録日2015-10-27
公開日2016-02-24
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.994 Å)
主引用文献Crystal structure of eukaryotic translation initiation factor 2B
Nature, 531, 2016
5B0P
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Beta-1,2-Mannobiose phosphorylase from Listeria innocua - glycerol complex
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, Lin0857 protein, ...
著者Tsuda, T, Arakawa, T, Fushinobu, S.
登録日2015-11-02
公開日2015-12-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Characterization and crystal structure determination of beta-1,2-mannobiose phosphorylase from Listeria innocua
Febs Lett., 589, 2015
1WN7
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BU of 1wn7 by Molmil
Crystal structure of archaeal family B DNA polymerase mutant
分子名称: Family B DNA Polymerase, GLYCEROL, NICKEL (II) ION
著者Kuroita, T, Matsumura, H, Yokota, N, Hashimoto, H, Imanaka, T, Inoue, T, Kai, Y.
登録日2004-07-28
公開日2005-08-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structural Mechanism for Coordination of Proofreading and Polymerase Activities in Archaeal DNA Polymerases
J.Mol.Biol., 351, 2005
3A4T
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BU of 3a4t by Molmil
Crystal structure of aTrm4 from M.jannaschii with sinefungin
分子名称: Putative methyltransferase MJ0026, SINEFUNGIN
著者Hirano, M, Kuratani, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-07-14
公開日2010-06-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of Methanocaldococcus jannaschii Trm4 complexed with sinefungin.
J.Mol.Biol., 401, 2010
1VS3
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BU of 1vs3 by Molmil
Crystal Structure of the tRNA Pseudouridine Synthase TruA From Thermus thermophilus HB8
分子名称: tRNA pseudouridine synthase A
著者Dong, X, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-06-28
公開日2006-12-12
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of tRNA pseudouridine synthase TruA from Thermus thermophilus HB8.
Rna Biol., 3, 2006
7VWS
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Carbazole Prenyl Transferase LvqB4
分子名称: 2-methyl-1-[(2R)-2-oxidanylpropyl]-9H-carbazole-3,4-dione, LvqB4, MAGNESIUM ION, ...
著者Suemune, H, Nagata, R, Kuzuyama, T, Nagano, S.
登録日2021-11-11
公開日2022-03-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Structural Basis for the Prenylation Reaction of Carbazole-Containing Natural Products Catalyzed by Squalene Synthase-Like Enzymes.
Angew.Chem.Int.Ed.Engl., 61, 2022
7VWT
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Carbazole Prenyl Transferase CqsB4
分子名称: 2-methyl-1-[(2R)-2-oxidanylpropyl]-9H-carbazole-3,4-dione, CqsB4, DI(HYDROXYETHYL)ETHER, ...
著者Suemune, H, Nagata, R, Kuzuyama, T, Nagano, S.
登録日2021-11-11
公開日2022-03-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Structural Basis for the Prenylation Reaction of Carbazole-Containing Natural Products Catalyzed by Squalene Synthase-Like Enzymes.
Angew.Chem.Int.Ed.Engl., 61, 2022
7XGP
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Human renin in complex with compound3
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Renin, UNKNOWN LIGAND
著者Kashima, A.
登録日2022-04-05
公開日2022-09-07
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Discovery of SPH3127: A Novel, Highly Potent, and Orally Active Direct Renin Inhibitor.
J.Med.Chem., 65, 2022
3AJD
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BU of 3ajd by Molmil
Crystal structure of ATRM4
分子名称: GLYCEROL, ISOPROPYL ALCOHOL, Putative methyltransferase MJ0026
著者Hirano, M, Kuratani, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2010-06-01
公開日2010-06-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.27 Å)
主引用文献Crystal structure of Methanocaldococcus jannaschii Trm4 complexed with sinefungin.
J.Mol.Biol., 401, 2010
3VSM
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BU of 3vsm by Molmil
The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
分子名称: GLYCEROL, Occlusion-derived virus envelope protein E66
著者Kawaguchi, Y, Sugiura, N, Kimata, K, Kimura, M, Kakuta, Y.
登録日2012-04-27
公開日2013-05-22
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
To be Published
3VSN
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The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
分子名称: GLYCEROL, IODIDE ION, Occlusion-derived virus envelope protein E66
著者Kawaguchi, Y, Sugiura, N, Kimata, K, Kimura, M, Kakuta, Y.
登録日2012-04-27
公開日2013-05-22
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
To be Published
3W1D
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Structure of a pressure sensitive YFP variant YFP-G3
分子名称: Green Fluorescent protein
著者Imada, K, Yoshizawa, K, Kinoshita, M, Watanabe, T.M.
登録日2012-11-14
公開日2013-10-02
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Glycine insertion makes yellow fluorescent protein sensitive to hydrostatic pressure.
Plos One, 8, 2013

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件を2024-09-18に公開中

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