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6Y2F
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BU of 6y2f by Molmil
Crystal structure (monoclinic form) of the complex resulting from the reaction between SARS-CoV-2 (2019-nCoV) main protease and tert-butyl (1-((S)-1-(((S)-4-(benzylamino)-3,4-dioxo-1-((S)-2-oxopyrrolidin-3-yl)butan-2-yl)amino)-3-cyclopropyl-1-oxopropan-2-yl)-2-oxo-1,2-dihydropyridin-3-yl)carbamate (alpha-ketoamide 13b)
分子名称: 3C-like proteinase, DIMETHYL SULFOXIDE, ~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate
著者Zhang, L, Lin, D, Sun, X, Hilgenfeld, R.
登録日2020-02-15
公開日2020-03-04
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of SARS-CoV-2 main protease provides a basis for design of improved alpha-ketoamide inhibitors.
Science, 368, 2020
6Y7M
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BU of 6y7m by Molmil
Crystal structure of the complex resulting from the reaction between the SARS-CoV main protease and tert-butyl (1-((S)-3-cyclohexyl-1-(((S)-4-(cyclopropylamino)-3,4-dioxo-1-((S)-2-oxopyrrolidin-3-yl)butan-2-yl)amino)-1-oxopropan-2-yl)-2-oxo-1,2-dihydropyridin-3-yl)carbamate
分子名称: 3C-like proteinase, DIMETHYL SULFOXIDE, ~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclohexyl-1-[[(2~{S},3~{R})-4-(cyclopropylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate
著者Zhang, L, Lin, D, Hilgenfeld, R.
登録日2020-03-01
公開日2020-03-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of SARS-CoV-2 main protease provides a basis for design of improved alpha-ketoamide inhibitors.
Science, 368, 2020
6Y2E
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BU of 6y2e by Molmil
Crystal structure of the free enzyme of the SARS-CoV-2 (2019-nCoV) main protease
分子名称: 3C-like proteinase
著者Zhang, L, Sun, X, Hilgenfeld, R.
登録日2020-02-15
公開日2020-03-04
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of SARS-CoV-2 main protease provides a basis for design of improved alpha-ketoamide inhibitors.
Science, 368, 2020
6YBH
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BU of 6ybh by Molmil
Deoxyribonucleoside Kinase
分子名称: Deoxynucleoside kinase, GLYCEROL, Pyrrolo-dC, ...
著者Allouche-Arnon, H, Bar-Shir, A, Dym, O.
登録日2020-03-17
公開日2021-03-31
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Computationally designed dual-color MRI reporters for noninvasive imaging of transgene expression.
Nat.Biotechnol., 40, 2022
6FS3
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BU of 6fs3 by Molmil
Phosphotriesterase PTE_A53_1
分子名称: (2~{S})-2-methylpentanedioic acid, FORMIC ACID, Parathion hydrolase, ...
著者Dym, O, Aggarwal, N, Albeck, S, Unger, T, Hamer Rogotner, S, Silman, I, Leader, H, Ashani, Y, Goldsmith, M, Greisen, P, Tawfik, D, Sussman, L.J.
登録日2018-02-19
公開日2019-03-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structures of Bacterail Phosphotriesterase variant with high catalytic activity towards organophosphate nerve agents developed by use of structure-based design and molecular evolution
To Be Published
3IIV
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BU of 3iiv by Molmil
Evolutionary optimization of computationally designed enzymes: Kemp eliminases of the KE07 series
分子名称: KE7 KE7_R7_1/3H, MAGNESIUM ION
著者Khersonsky, O, Dym, O, Tawfik, D.S.
登録日2009-08-03
公開日2010-03-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Evolutionary Optimization of Computationally Designed Enzymes: Kemp Eliminases of the KE07 Series.
J.Mol.Biol., 396, 2010
3IIO
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BU of 3iio by Molmil
Evolutionary optimization of computationally designed enzymes: Kemp eliminases of the KE07 series
分子名称: KE07
著者Khersonsky, O, Dym, O, Tawfik, D.S.
登録日2009-08-03
公開日2010-03-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Evolutionary Optimization of Computationally Designed Enzymes: Kemp Eliminases of the KE07 Series.
J.Mol.Biol., 396, 2010
3JXV
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BU of 3jxv by Molmil
Crystal Structure of the 3 FKBP domains of wheat FKBP73
分子名称: 70 kDa peptidyl-prolyl isomerase
著者Dym, O, Breiman, A, Israel Structural Proteomics Center (ISPC)
登録日2009-09-21
公開日2010-06-16
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Crystal structure of the three FK506 binding protein domains of wheat FKBP73: evidence for a unique wFK73_2 domain.
J Struct Funct Genomics, 11, 2010
5NB5
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BU of 5nb5 by Molmil
Principles for computational design of antibodies
分子名称: design of antibodies
著者Dym, O, Fleishman, S.J.
登録日2017-03-01
公開日2017-09-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Principles for computational design of binding antibodies.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NBI
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BU of 5nbi by Molmil
Principles for computational design of antibodies
分子名称: Design of antibodies
著者Dym, O, Fleishman, S.J.
登録日2017-03-02
公開日2017-09-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Principles for computational design of binding antibodies.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7QI2
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BU of 7qi2 by Molmil
Magic-angle spinning NMR structure of the human voltage-dependent anion channel 1 (E73V/C127A/C232S) in DMPC lipid bilayers
分子名称: Voltage-dependent anion-selective channel protein 1
著者Najbauer, E.E, Andreas, L.B.
登録日2021-12-14
公開日2022-03-16
最終更新日2024-06-19
実験手法SOLID-STATE NMR
主引用文献Structure and Gating Behavior of the Human Integral Membrane Protein VDAC1 in a Lipid Bilayer.
J.Am.Chem.Soc., 144, 2022
3JYM
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BU of 3jym by Molmil
Crystal Structure of the 3 FKBP domains of wheat FKBP73
分子名称: FK506-binding protein (FKBP) from wheat
著者Dym, O, Breiman, A, Israel Structural Proteomics Center (ISPC)
登録日2009-09-22
公開日2010-06-16
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Crystal structure of the three FK506 binding protein domains of wheat FKBP73: evidence for a unique wFK73_2 domain
J.STRUCT.FUNCT.GENOM., 11, 2010
3IIP
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BU of 3iip by Molmil
Evolutionary optimization of computationally designed enzymes: Kemp eliminases of the KE07 series
分子名称: KE7 R6 3/7F, POLYETHYLENE GLYCOL (N=34)
著者Khersonsky, O, Dym, O, Tawfik, D.S.
登録日2009-08-03
公開日2010-03-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Evolutionary Optimization of Computationally Designed Enzymes: Kemp Eliminases of the KE07 Series.
J.Mol.Biol., 396, 2010
7JZT
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BU of 7jzt by Molmil
Low resolution crystal structure of Zaire Ebola virus VP40 in space group P6422
分子名称: Matrix protein VP40
著者Norris, M.J, Bornholdt, Z.A, Saphire, E.O.
登録日2020-09-02
公開日2020-10-21
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.77 Å)
主引用文献Ebola and Marburg virus matrix layers are locally ordered assemblies of VP40 dimers.
Elife, 9, 2020
7JZJ
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BU of 7jzj by Molmil
Crystal structure demonstrating CTD-CTD interactions of Zaire Ebola virus VP40 dimer
分子名称: Matrix protein VP40, PENTAETHYLENE GLYCOL
著者Norris, M.J, Bornholdt, Z.A, Saphire, E.O.
登録日2020-09-02
公開日2020-10-28
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Ebola and Marburg virus matrix layers are locally ordered assemblies of VP40 dimers.
Elife, 9, 2020
1S0W
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BU of 1s0w by Molmil
1b Lactamse/ b Lactamase Inhibitor
分子名称: Beta-lactamase inhibitory protein, CALCIUM ION, beta-lactamase TEM
著者Schreiber, G, Reichman, D, Israel Structural Proteomics Center (ISPC)
登録日2004-01-05
公開日2004-02-10
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The modular architecture of protein-protein binding interfaces.
Proc.Natl.Acad.Sci.USA, 102, 2005
8QWQ
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BU of 8qwq by Molmil
Magic-angle spinning NMR Structure of Opa60 in Lipid Bilayers
分子名称: Opacity protein opA60 (Fragment)
著者Forster, M.C, Andreas, L.B.
登録日2023-10-19
公開日2024-07-24
実験手法SOLID-STATE NMR
主引用文献Magic-angle spinning NMR structure of Opa60 in lipid bilayers.
J Struct Biol X, 9, 2024
6HYI
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BU of 6hyi by Molmil
Regulatory subunit of a cAMP-independent protein kinase A from Trypanosoma cruzi at 1.4 A resolution in complex with inosine
分子名称: INOSINE, Protein kinase A regulatory subunit
著者Volpato Santos, Y, Lorentzen, E, Basquin, J, Boshart, M.
登録日2018-10-22
公開日2019-11-13
最終更新日2024-04-10
実験手法X-RAY DIFFRACTION (1.39944851 Å)
主引用文献Purine nucleosides replace cAMP in allosteric regulation of PKA in trypanosomatid pathogens.
Elife, 12, 2024
6R99
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BU of 6r99 by Molmil
Crystal Structure of Human CLN protein 5 (Ceroid Lipofuscinosis Neuronal Protein 5)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ceroid-lipofuscinosis neuronal protein 5, ...
著者Luebben, A.V, Sheldrick, G.M.
登録日2019-04-03
公開日2020-04-22
最終更新日2022-09-28
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Cln5 represents a new type of cysteine-based S -depalmitoylase linked to neurodegeneration.
Sci Adv, 8, 2022
6H4G
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BU of 6h4g by Molmil
Regulatory subunit of a cAMP-independent protein kinase A from Trypanosoma brucei: E311A, T318R, V319A mutant bound to cAMP in the A site
分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, INOSINE, Protein kinase A regulatory subunit
著者Volpato Santos, Y, Lorentzen, E, Basquin, J, Boshart, M.
登録日2018-07-21
公開日2019-08-14
最終更新日2024-04-10
実験手法X-RAY DIFFRACTION (2.143517 Å)
主引用文献Purine nucleosides replace cAMP in allosteric regulation of PKA in trypanosomatid pathogens.
Elife, 12, 2024
8A6M
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BU of 8a6m by Molmil
Phosphatidylserine-dependent synaptic vesicle membrane sculpting by synaptogyrin
分子名称: Isoform 1B of Synaptogyrin-1
著者Yu, T.K, Eastep, G.N, Flores, D, Zweckstetter, M.
登録日2022-06-18
公開日2023-05-24
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Phosphatidylserine-dependent structure of synaptogyrin remodels the synaptic vesicle membrane.
Nat.Struct.Mol.Biol., 30, 2023
8A4T
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BU of 8a4t by Molmil
crystal structures of diastereomer (S,S,S)-13b (13b-K) in complex with the SARS-CoV-2 Mpro
分子名称: 3C-like proteinase nsp5, CHLORIDE ION, ~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate
著者Ibrahim, M, Hilgenfeld, R, Zhang, L.
登録日2022-06-13
公開日2022-10-12
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Diastereomeric Resolution Yields Highly Potent Inhibitor of SARS-CoV-2 Main Protease.
J.Med.Chem., 65, 2022
8A4Q
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BU of 8a4q by Molmil
crystal structures of diastereomer (R,S,S)-13b (13b-H) in complex with the SARS-CoV-2 Mpro.
分子名称: 3C-like proteinase nsp5, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
著者Ibrahim, M, Hilgenfeld, R, Zhang, L.
登録日2022-06-13
公開日2022-10-12
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Diastereomeric Resolution Yields Highly Potent Inhibitor of SARS-CoV-2 Main Protease.
J.Med.Chem., 65, 2022
6FLO
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BU of 6flo by Molmil
Regulatory subunit of a cAMP-independent protein kinase A from Trypanosoma brucei at 2.1 Angstrom resolution
分子名称: GLYCEROL, INOSINE, Protein kinase A regulatory subunit
著者Volpato Santos, Y, Lorentzen, E, Basquin, J, Boshart, M.
登録日2018-01-26
公開日2019-08-14
最終更新日2024-04-10
実験手法X-RAY DIFFRACTION (2.13868666 Å)
主引用文献Purine nucleosides replace cAMP in allosteric regulation of PKA in trypanosomatid pathogens.
Elife, 12, 2024
3QA9
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BU of 3qa9 by Molmil
Crystal Structure of Prb (PH1109 protein redesigned for binding)
分子名称: CoA binding domain protein
著者Spiegel, P.C.
登録日2011-01-10
公開日2011-04-20
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A de novo protein binding pair by computational design and directed evolution.
Mol.Cell, 42, 2011

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件を2024-08-14に公開中

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