1VA2
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![BU of 1va2 by Molmil](/molmil-images/mine/1va2) | Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 2) | Descriptor: | Transcription factor Sp1, ZINC ION | Authors: | Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y. | Deposit date: | 2004-02-07 | Release date: | 2005-02-08 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | NMR structure of transcription factor Sp1 DNA binding domain Biochemistry, 43, 2004
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1VA3
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![BU of 1va3 by Molmil](/molmil-images/mine/1va3) | Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 3) | Descriptor: | Transcription factor Sp1, ZINC ION | Authors: | Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y. | Deposit date: | 2004-02-07 | Release date: | 2005-02-08 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | NMR structure of transcription factor Sp1 DNA binding domain Biochemistry, 43, 2004
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1VA1
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![BU of 1va1 by Molmil](/molmil-images/mine/1va1) | Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 1) | Descriptor: | Transcription factor Sp1, ZINC ION | Authors: | Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y. | Deposit date: | 2004-02-07 | Release date: | 2005-02-08 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | NMR structure of transcription factor Sp1 DNA binding domain Biochemistry, 43, 2004
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1FEX
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![BU of 1fex by Molmil](/molmil-images/mine/1fex) | |
3PIR
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![BU of 3pir by Molmil](/molmil-images/mine/3pir) | Crystal structure of M-RasD41E in complex with GppNHp (type 1) | Descriptor: | MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein M-Ras | Authors: | Muraoka, S, Matsumoto, K, Shima, F, Hu, L, Ijiri, Y, Hirai, R, Liao, J, Kataoka, T. | Deposit date: | 2010-11-07 | Release date: | 2011-03-09 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.75 Å) | Cite: | Crystal structure of M-RasD41E in complex with GppNHp (type 1) To be Published
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8PXB
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![BU of 8pxb by Molmil](/molmil-images/mine/8pxb) | |
3PIT
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![BU of 3pit by Molmil](/molmil-images/mine/3pit) | Crystal structure of M-RasD41E in complex with GppNHp (type 2) | Descriptor: | MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein M-Ras | Authors: | Muraoka, S, Matsumoto, K, Shima, F, Hu, L, Ijiri, Y, Hirai, R, Liao, J, Kataoka, T. | Deposit date: | 2010-11-08 | Release date: | 2011-03-09 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Crystal structure of M-RasD41E in complex with GppNHp (type 2) To be Published
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4EFM
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![BU of 4efm by Molmil](/molmil-images/mine/4efm) | Crystal structure of H-Ras G12V in complex with GppNHp (state 1) | Descriptor: | GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | Authors: | Muraoka, S, Shima, F, Araki, M, Inoue, T, Yoshimoto, A, Ijiri, Y, Seki, N, Tamura, A, Kumasaka, T, Yamamoto, M, Kataoka, T. | Deposit date: | 2012-03-30 | Release date: | 2012-05-16 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants Febs Lett., 586, 2012
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4EFN
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![BU of 4efn by Molmil](/molmil-images/mine/4efn) | Crystal structure of H-Ras Q61L in complex with GppNHp (state 1) | Descriptor: | GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | Authors: | Muraoka, S, Shima, F, Araki, M, Inoue, T, Yoshimoto, A, Ijiri, Y, Seki, N, Tamura, A, Kumasaka, T, Yamamoto, M, Kataoka, T. | Deposit date: | 2012-03-30 | Release date: | 2012-05-16 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants Febs Lett., 586, 2012
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4EFL
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![BU of 4efl by Molmil](/molmil-images/mine/4efl) | Crystal structure of H-Ras WT in complex with GppNHp (state 1) | Descriptor: | GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | Authors: | Muraoka, S, Shima, F, Araki, M, Inoue, T, Yoshimoto, A, Ijiri, Y, Seki, N, Tamura, A, Kumasaka, T, Yamamoto, M, Kataoka, T. | Deposit date: | 2012-03-30 | Release date: | 2012-05-16 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants Febs Lett., 586, 2012
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8PVR
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![BU of 8pvr by Molmil](/molmil-images/mine/8pvr) | Cryo-EM structure of horse Nhe9 bound to PI(3,5)P2 | Descriptor: | (2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate, Sodium/hydrogen exchanger 9 | Authors: | Kokane, S, Meier, P, Gulati, A, Delemotte, L, Drew, D. | Deposit date: | 2023-07-18 | Release date: | 2024-07-24 | Method: | ELECTRON MICROSCOPY (3.06 Å) | Cite: | PIP2 mediated oligomerization of the endosomal sodium/proton exchanger NHE9 To Be Published
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1M54
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![BU of 1m54 by Molmil](/molmil-images/mine/1m54) | CYSTATHIONINE-BETA SYNTHASE: REDUCED VICINAL THIOLS | Descriptor: | CYSTATHIONINE BETA-SYNTHASE, PROTOPORPHYRIN IX CONTAINING FE, PYRIDOXAL-5'-PHOSPHATE | Authors: | Taoka, S, Lepore, B.W, Kabil, O, Ojha, S, Ringe, D, Banerjee, R. | Deposit date: | 2002-07-08 | Release date: | 2002-08-14 | Last modified: | 2021-10-27 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | HUMAN CYSTATHIONINE BETA-SYNTHASE IS A HEME SENSOR PROTEIN. EVIDENCE THAT THE
REDOX SENSOR IS HEME AND NOT THE VICINAL CYSTEINES IN THE CXXC MOTIF SEEN IN THE CRYSTAL STRUCTURE OF THE TRUNCATED ENZYME BIOCHEMISTRY, 41, 2002
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6ESF
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![BU of 6esf by Molmil](/molmil-images/mine/6esf) | Nucleosome : Class 1 | Descriptor: | DNA (147-MER), Histone H2A, Histone H2B 1.1, ... | Authors: | Bilokapic, S, Halic, M. | Deposit date: | 2017-10-20 | Release date: | 2017-12-20 | Last modified: | 2024-05-15 | Method: | ELECTRON MICROSCOPY (3.7 Å) | Cite: | Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
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6ESG
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![BU of 6esg by Molmil](/molmil-images/mine/6esg) | Nucleosome breathing : Class 2 | Descriptor: | DNA (141-MER), Histone H2A, Histone H2B 1.1, ... | Authors: | Bilokapic, S, Halic, M. | Deposit date: | 2017-10-20 | Release date: | 2017-12-20 | Last modified: | 2024-05-15 | Method: | ELECTRON MICROSCOPY (5.4 Å) | Cite: | Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
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6ESH
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![BU of 6esh by Molmil](/molmil-images/mine/6esh) | Nucleosome breathing : Class 3 | Descriptor: | DNA (137-MER), Histone H2A, Histone H2B 1.1, ... | Authors: | Bilokapic, S, Halic, M. | Deposit date: | 2017-10-20 | Release date: | 2017-12-20 | Last modified: | 2024-05-15 | Method: | ELECTRON MICROSCOPY (5.1 Å) | Cite: | Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
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6ESI
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![BU of 6esi by Molmil](/molmil-images/mine/6esi) | Nucleosome breathing : Class 4 | Descriptor: | DNA (133-MER), Histone H2A, Histone H2B 1.1, ... | Authors: | Bilokapic, S, Halic, M. | Deposit date: | 2017-10-20 | Release date: | 2017-12-20 | Last modified: | 2024-05-15 | Method: | ELECTRON MICROSCOPY (6.3 Å) | Cite: | Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
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6FQ6
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![BU of 6fq6 by Molmil](/molmil-images/mine/6fq6) | Class 2 : distorted nucleosome | Descriptor: | DNA (147-MER), Histone H2A, Histone H2B, ... | Authors: | Bilokapic, S, Halic, M. | Deposit date: | 2018-02-13 | Release date: | 2018-04-18 | Last modified: | 2024-05-15 | Method: | ELECTRON MICROSCOPY (4 Å) | Cite: | Structural rearrangements of the histone octamer translocate DNA. Nat Commun, 9, 2018
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6FQ5
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![BU of 6fq5 by Molmil](/molmil-images/mine/6fq5) | Class 1 : canonical nucleosome | Descriptor: | DNA (147-MER), Histone H2A, Histone H2B, ... | Authors: | Bilokapic, S, Halic, M. | Deposit date: | 2018-02-13 | Release date: | 2018-04-18 | Last modified: | 2024-05-15 | Method: | ELECTRON MICROSCOPY (3.8 Å) | Cite: | Structural rearrangements of the histone octamer translocate DNA. Nat Commun, 9, 2018
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6FQ8
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![BU of 6fq8 by Molmil](/molmil-images/mine/6fq8) | Class 3 : translocated nucleosome | Descriptor: | DNA (147-MER), Histone H2A, Histone H2B, ... | Authors: | Bilokapic, S, Halic, M. | Deposit date: | 2018-02-13 | Release date: | 2018-04-18 | Last modified: | 2024-05-15 | Method: | ELECTRON MICROSCOPY (4.8 Å) | Cite: | Structural rearrangements of the histone octamer translocate DNA. Nat Commun, 9, 2018
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4FCC
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![BU of 4fcc by Molmil](/molmil-images/mine/4fcc) | Glutamate dehydrogenase from E. coli | Descriptor: | Glutamate dehydrogenase | Authors: | Bilokapic, S, Schwartz, T.U. | Deposit date: | 2012-05-24 | Release date: | 2012-09-26 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Molecular basis for Nup37 and ELY5/ELYS recruitment to the nuclear pore complex. Proc.Natl.Acad.Sci.USA, 109, 2012
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4FHM
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![BU of 4fhm by Molmil](/molmil-images/mine/4fhm) | |
3DXV
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![BU of 3dxv by Molmil](/molmil-images/mine/3dxv) | The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae | Descriptor: | Alpha-amino-epsilon-caprolactam racemase, PYRIDOXAL-5'-PHOSPHATE | Authors: | Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T. | Deposit date: | 2008-07-25 | Release date: | 2009-02-17 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.21 Å) | Cite: | The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae Biochemistry, 48, 2009
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3DXW
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![BU of 3dxw by Molmil](/molmil-images/mine/3dxw) | The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae complexed with epsilon caprolactam | Descriptor: | Alpha-amino-epsilon-caprolactam racemase, PYRIDOXAL-5'-PHOSPHATE, azepan-2-one | Authors: | Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T. | Deposit date: | 2008-07-25 | Release date: | 2009-07-28 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.41 Å) | Cite: | The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae Biochemistry, 48, 2009
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1IZ1
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![BU of 1iz1 by Molmil](/molmil-images/mine/1iz1) | CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR | Descriptor: | LysR-type regulatory protein | Authors: | Muraoka, S, Okumura, R, Ogawa, N, Miyashita, K, Senda, T. | Deposit date: | 2002-09-18 | Release date: | 2003-05-06 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal Structure of a Full-length LysR-type Transcriptional Regulator, CbnR: Unusual Combination of Two Subunit Forms and Molecular Bases for Causing and Changing DNA Bend J.Mol.Biol., 328, 2003
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3A4I
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![BU of 3a4i by Molmil](/molmil-images/mine/3a4i) | Crystal structure of GMP synthetase PH1347 from Pyrococcus horikoshii OT3 | Descriptor: | GMP synthase [glutamine-hydrolyzing] subunit B | Authors: | Maruoka, S, Horita, S, Lee, W.C, Nagata, K, Tanokura, M. | Deposit date: | 2009-07-07 | Release date: | 2009-07-21 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.79 Å) | Cite: | Crystal structure of the ATPPase subunit and its substrate-dependent association with the GATase Subunit: a novel regulatory mechanism for a two-subunit-type GMP synthetase from Pyrococcus horikoshii OT3. J.Mol.Biol., 395, 2010
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