Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3I5R
DownloadVisualize
BU of 3i5r by Molmil
PI3K SH3 domain in complex with a peptide ligand
Descriptor: Peptide ligand, Phosphatidylinositol 3-kinase regulatory subunit alpha
Authors:Batra-Safferling, R, Granzin, J, Modder, S, Hoffmann, S, Willbold, D.
Deposit date:2009-07-06
Release date:2010-03-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural studies of the phosphatidylinositol 3-kinase (PI3K) SH3 domain in complex with a peptide ligand: role of the anchor residue in ligand binding.
Biol.Chem., 391, 2010
3I5S
DownloadVisualize
BU of 3i5s by Molmil
Crystal structure of PI3K SH3
Descriptor: Phosphatidylinositol 3-kinase regulatory subunit alpha, SULFATE ION
Authors:Batra-Safferling, R, Granzin, J, Modder, S, Hoffmann, S, Willbold, D.
Deposit date:2009-07-06
Release date:2010-03-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural studies of the phosphatidylinositol 3-kinase (PI3K) SH3 domain in complex with a peptide ligand: role of the anchor residue in ligand binding.
Biol.Chem., 391, 2010
7ZQU
DownloadVisualize
BU of 7zqu by Molmil
A fast recovering full-length LOV protein (DsLOV) from the marine phototrophic bacterium Dinoroseobacter shibae (Dark state) - C72A mutant
Descriptor: FLAVIN MONONUCLEOTIDE, Putative blue-light photoreceptor
Authors:Batra-Safferling, R, Granzin, J.
Deposit date:2022-05-03
Release date:2023-05-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A fast recovering full-length LOV protein (DsLOV) from the marine phototrophic bacterium Dinoroseobacter shibae (Dark state) - C72A mutant
To Be Published
8A36
DownloadVisualize
BU of 8a36 by Molmil
Crystal structure of PpSB1-LOV-K117E mutant (dark state), monoclinic form
Descriptor: FLAVIN MONONUCLEOTIDE, Sensory box protein
Authors:Batra-Safferling, R, Granzin, J.
Deposit date:2022-06-07
Release date:2023-07-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of PpSB1-LOV-K117E mutant (dark state), monoclinic form
To Be Published
8A33
DownloadVisualize
BU of 8a33 by Molmil
Crystal structure of PpSB1-LOV-K117E mutant (light state)
Descriptor: Flavin mononucleotide (semi-quinone intermediate), Sensory box protein
Authors:Batra-Safferling, R, Granzin, J, Krauss, U.
Deposit date:2022-06-07
Release date:2023-07-05
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Crystal structure of PpSB1-LOV-K117E mutant (light state)
To Be Published
8A37
DownloadVisualize
BU of 8a37 by Molmil
Crystal structure of PpSB1-LOV-K117E mutant (dark state), tetragonal form
Descriptor: DI(HYDROXYETHYL)ETHER, FLAVIN MONONUCLEOTIDE, Sensory box protein
Authors:Batra-Safferling, R, Granzin, J.
Deposit date:2022-06-07
Release date:2023-07-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Crystal structure of PpSB1-LOV-K117E mutant (dark state), tetragonal form
To Be Published
8A52
DownloadVisualize
BU of 8a52 by Molmil
Crystal structure of a chimeric LOV-Histidine kinase SB2F1 (asymmetrical variant, trigonal form with long c-axis)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, FLAVIN MONONUCLEOTIDE, Putative Sensory box protein,Putative Sensory box protein,Sensor protein FixL
Authors:Batra-Safferling, R, Arinkin, V, Granzin, J.
Deposit date:2022-06-14
Release date:2023-12-27
Method:X-RAY DIFFRACTION (2.461 Å)
Cite:Crystal structure of a chimeric LOV-Histidine kinase SB2F1 (asymmetrical variant, trigonal form with long c axis)
To Be Published
8A7F
DownloadVisualize
BU of 8a7f by Molmil
Crystal structure of a chimeric LOV-Histidine kinase SB2F1-I66R mutant (asymmetrical variant, trigonal form with long c axis)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, FLAVIN MONONUCLEOTIDE, Putative Sensory box protein,Sensor protein FixL
Authors:Batra-Safferling, R, Arinkin, V, Granzin, J.
Deposit date:2022-06-21
Release date:2024-01-10
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Crystal structure of a chimeric LOV-Histidine kinase SB2F1-I66R mutant (asymmetrical variant, trigonal form with long c axis)
To Be Published
3UGX
DownloadVisualize
BU of 3ugx by Molmil
Crystal Structure of Visual Arrestin
Descriptor: 1,2-ETHANEDIOL, IMIDAZOLE, PENTANEDIAL, ...
Authors:Batra-Safferling, R, Granzin, J.
Deposit date:2011-11-03
Release date:2012-02-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.649 Å)
Cite:Crystal Structure of p44, a Constitutively Active Splice Variant of Visual Arrestin.
J.Mol.Biol., 416, 2012
3UGU
DownloadVisualize
BU of 3ugu by Molmil
Crystal Structure of p44 (Splice Variant of Visual Arrestin)
Descriptor: S-arrestin
Authors:Batra-Safferling, R, Granzin, J.
Deposit date:2011-11-03
Release date:2012-02-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structure of p44, a Constitutively Active Splice Variant of Visual Arrestin.
J.Mol.Biol., 416, 2012
5J3W
DownloadVisualize
BU of 5j3w by Molmil
Crystal structures reveal signaling states of a short blue light photoreceptor protein PpSB1-LOV (dark state)
Descriptor: FLAVIN MONONUCLEOTIDE, Sensory box protein
Authors:Granzin, J, Batra-Safferling, R.
Deposit date:2016-03-31
Release date:2016-06-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Signaling States of a Short Blue-Light Photoreceptor Protein PpSB1-LOV Revealed from Crystal Structures and Solution NMR Spectroscopy.
J.Mol.Biol., 428, 2016
5J4E
DownloadVisualize
BU of 5j4e by Molmil
Crystal structures reveal signaling states of a short blue light photoreceptor protein PpSB1-LOV (Photoexcited state)
Descriptor: FLAVIN MONONUCLEOTIDE, Sensory box protein
Authors:Granzin, J, Batra-Safferling, R.
Deposit date:2016-04-01
Release date:2016-06-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Signaling States of a Short Blue-Light Photoreceptor Protein PpSB1-LOV Revealed from Crystal Structures and Solution NMR Spectroscopy.
J.Mol.Biol., 428, 2016
4ZRG
DownloadVisualize
BU of 4zrg by Molmil
Visual arrestin mutant - R175E
Descriptor: CARBON DIOXIDE, S-arrestin
Authors:Granzin, J, Stadler, A, Cousin, A, Schlesinger, R, Batra-Safferling, R.
Deposit date:2015-05-12
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural evidence for the role of polar core residue Arg175 in arrestin activation.
Sci Rep, 5, 2015
6I8W
DownloadVisualize
BU of 6i8w by Molmil
Crystal structure of a membrane phospholipase A, a novel bacterial virulence factor
Descriptor: Alpha/beta fold hydrolase, CARBON DIOXIDE, ISOPROPYL ALCOHOL, ...
Authors:Granzin, J, Batra-Safferling, R.
Deposit date:2018-11-21
Release date:2019-11-27
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural, mechanistic, and physiological insights into phospholipase A-mediated membrane phospholipid degradation in Pseudomonas aeruginosa.
Elife, 11, 2022
7ABY
DownloadVisualize
BU of 7aby by Molmil
Crystal structure of iLOV-Q489K mutant
Descriptor: ACETATE ION, FLAVIN MONONUCLEOTIDE, Phototropin-2
Authors:Granzin, J, Batra-Safferling, R.
Deposit date:2020-09-09
Release date:2021-04-21
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The molecular basis of spectral tuning in blue- and red-shifted flavin-binding fluorescent proteins.
J.Biol.Chem., 296, 2021
5LTL
DownloadVisualize
BU of 5ltl by Molmil
Structure of human chemokine CCL16
Descriptor: C-C motif chemokine 16, GLYCEROL, SODIUM ION
Authors:Weiergraeber, O.H, Batra-Safferling, R, Haenel, K, Willbold, D.
Deposit date:2016-09-07
Release date:2018-05-09
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure and dynamics of human chemokine CCL16
To Be Published
5LUV
DownloadVisualize
BU of 5luv by Molmil
Short LOV protein W619_1 in apo-state
Descriptor: CHLORIDE ION, Putative PAS/PAC sensor protein, SULFATE ION
Authors:Arinkin, V, Granzin, J, Batra-Safferling, R.
Deposit date:2016-09-12
Release date:2017-02-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of a LOV protein in apo-state and implications for construction of LOV-based optical tools.
Sci Rep, 7, 2017
7R4S
DownloadVisualize
BU of 7r4s by Molmil
Crystal structure of PpSB1-LOV-I48T mutant (dark state)
Descriptor: FLAVIN MONONUCLEOTIDE, Sensory box protein
Authors:Granzin, J, Batra-Safferling, R.
Deposit date:2022-02-09
Release date:2022-12-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Residue alterations within a conserved hydrophobic pocket influence light, oxygen, voltage photoreceptor dark recovery.
Photochem Photobiol Sci, 22, 2023
7R56
DownloadVisualize
BU of 7r56 by Molmil
Crystal structure of PpSB1-LOV-I48T mutant (light state)
Descriptor: FLAVIN MONONUCLEOTIDE, Sensory box protein
Authors:Granzin, J, Batra-Safferling, R.
Deposit date:2022-02-10
Release date:2022-12-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Residue alterations within a conserved hydrophobic pocket influence light, oxygen, voltage photoreceptor dark recovery.
Photochem Photobiol Sci, 22, 2023
7R5N
DownloadVisualize
BU of 7r5n by Molmil
Crystal structure of the full-length short LOV protein PF5-LOV from Pseudomonas fluorescens (dark state)
Descriptor: FLAVIN MONONUCLEOTIDE, Sensory box protein
Authors:Arinkin, V, Batra-Safferling, R, Granzin, J.
Deposit date:2022-02-11
Release date:2023-08-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Conserved Signal Transduction Mechanisms and Dark Recovery Kinetic Tuning in the Pseudomonadaceae Short Light, Oxygen, Voltage (LOV) Protein Family.
J.Mol.Biol., 2024
3SW1
DownloadVisualize
BU of 3sw1 by Molmil
Structure of a full-length bacterial LOV protein
Descriptor: FLAVIN MONONUCLEOTIDE, Sensory box protein
Authors:Granzin, J, Batra-Safferling, R, Jaeger, K.-E, Drepper, T, Krauss, U.
Deposit date:2011-07-13
Release date:2012-02-15
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Structural Basis for the Slow Dark Recovery of a Full-Length LOV Protein from Pseudomonas putida.
J.Mol.Biol., 417, 2012
4JGG
DownloadVisualize
BU of 4jgg by Molmil
Crystal Structure of TesA
Descriptor: Esterase TesA
Authors:Kovacic, F, Granzin, J, Batra-Safferling, R, Jaeger, K.-E.
Deposit date:2013-03-01
Release date:2013-08-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and Functional Characterisation of TesA - A Novel Lysophospholipase A from Pseudomonas aeruginosa.
Plos One, 8, 2013
4KUO
DownloadVisualize
BU of 4kuo by Molmil
A superfast recovering full-length LOV protein from the marine phototrophic bacterium Dinoroseobacter shibae (Photoexcited state)
Descriptor: RIBOFLAVIN, blue-light photoreceptor
Authors:Circolone, F, Granzin, J, Stadler, A, Krauss, U, Drepper, T, Endres, S, Knieps-Gruenhagen, E, Wirtz, A, Willbold, D, Batra-Safferling, R, Jaeger, K.-E.
Deposit date:2013-05-22
Release date:2014-11-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and function of a short LOV protein from the marine phototrophic bacterium Dinoroseobacter shibae.
BMC Microbiol, 15, 2015
4KUK
DownloadVisualize
BU of 4kuk by Molmil
A superfast recovering full-length LOV protein from the marine phototrophic bacterium Dinoroseobacter shibae (Dark state)
Descriptor: ACETIC ACID, RIBOFLAVIN, blue-light photoreceptor
Authors:Circolone, F, Granzin, J, Stadler, A, Krauss, U, Drepper, T, Endres, S, Knieps-Gruenhagen, E, Wirtz, A, Willbold, D, Batra-Safferling, R, Jaeger, K.-E.
Deposit date:2013-05-22
Release date:2014-11-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and function of a short LOV protein from the marine phototrophic bacterium Dinoroseobacter shibae.
BMC Microbiol, 15, 2015
7A6P
DownloadVisualize
BU of 7a6p by Molmil
Structural determinants underlying the adduct lifetime in a short LOV protein PpSB2-LOV
Descriptor: DI(HYDROXYETHYL)ETHER, FLAVIN MONONUCLEOTIDE, Putative Sensory box protein
Authors:Arinkin, V, Granzin, J, Batra-Safferling, R.
Deposit date:2020-08-26
Release date:2021-03-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structural determinants underlying the adduct lifetime in the LOV proteins of Pseudomonas putida.
Febs J., 288, 2021

 

12>

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon