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3VKW
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BU of 3vkw by Molmil
Crystal Structure of the Superfamily 1 Helicase from Tomato Mosaic Virus
Descriptor: Replicase large subunit, SULFATE ION
Authors:Nishikiori, M, Sugiyama, S, Xiang, H, Niiyama, M, Ishibashi, K, Inoue, T, Ishikawa, M, Matsumura, H, Katoh, E.
Deposit date:2011-11-22
Release date:2012-07-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the superfamily 1 helicase from tomato mosaic virus
J.Virol., 86, 2012
3WQT
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BU of 3wqt by Molmil
Staphylococcus aureus FtsA complexed with AMPPNP
Descriptor: CHLORIDE ION, Cell division protein FtsA, MAGNESIUM ION, ...
Authors:Fujita, J, Maeda, Y, Miyazaki, Y, Inoue, T, Matsumura, H.
Deposit date:2014-02-01
Release date:2014-10-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of FtsA from Staphylococcus aureus
FEBS Lett., 588, 2014
3VI5
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BU of 3vi5 by Molmil
Human hematopoietic prostaglandin D synthase inhibitor complex structures
Descriptor: 1-amino-9,10-dioxo-4-[(4-sulfamoylphenyl)amino]-9,10-dihydroanthracene-2-sulfonic acid, CALCIUM ION, GLUTATHIONE, ...
Authors:Kado, Y, Inoue, T.
Deposit date:2011-09-21
Release date:2012-04-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Human hematopoietic prostaglandin D synthase inhibitor complex structures
J.Biochem., 151, 2012
3WKP
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BU of 3wkp by Molmil
C135A mutant of Geobacillus thermodenitrificans copper-containing nitrite reductase in complex with nitrite
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Fukuda, Y, Inoue, T.
Deposit date:2013-10-29
Release date:2013-12-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:C135A mutant of Geobacillus thermodenitrificans copper-containing nitrite reductase in complex with nitrite
to be published
3WKQ
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BU of 3wkq by Molmil
Copper-containing nitrite reductase from Geobacillus thermodenitrificans in complex with formate
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, COPPER (II) ION, ...
Authors:Fukuda, Y, Inoue, T.
Deposit date:2013-10-29
Release date:2013-12-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Copper-containing nitrite reductase from Geobacillus thermodenitrificans in complex with formate
to be published
3WQU
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BU of 3wqu by Molmil
Staphylococcus aureus FtsA complexed with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division protein FtsA, MAGNESIUM ION
Authors:Fujita, J, Maeda, Y, Miyazaki, Y, Inoue, T, Matsumura, H.
Deposit date:2014-02-01
Release date:2014-10-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of FtsA from Staphylococcus aureus
FEBS Lett., 588, 2014
3WNJ
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BU of 3wnj by Molmil
1.20 A resolution crystal structure of dioxygen bound copper-containing nitrite reductase from Geobacillus thermodenitrificans
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, ACETIC ACID, ...
Authors:Fukuda, Y, Inoue, T.
Deposit date:2013-12-10
Release date:2014-12-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystallographic evidence for side-on dioxygen trapped on type 2 copper in copper-containing nitrite reductase
To be Published
3WNI
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BU of 3wni by Molmil
1.50 A resolution crystal structure of dioxygen bound copper-containing nitrite reductase from Geobacillus thermodenitrificans
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
Authors:Fukuda, Y, Inoue, T.
Deposit date:2013-12-10
Release date:2014-12-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystallographic evidence for side-on dioxygen trapped on type 2 copper in copper-containing nitrite reductase
To be Published
3WR7
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BU of 3wr7 by Molmil
Crystal Structure of Spermidine Acetyltransferase from Escherichia coli
Descriptor: COENZYME A, SPERMIDINE, Spermidine N1-acetyltransferase
Authors:Sugiyama, S, Ishikawa, S, Tomitori, S, Niiyama, M, Hirose, M, Miyazaki, Y, Higashi, K, Adachi, H, Takano, K, Murakami, S, Inoue, T, Mori, Y, Kashiwagi, K, Igarashi, K, Matsumura, H.
Deposit date:2014-02-20
Release date:2015-09-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular mechanism underlying promiscuous polyamine recognition by spermidine acetyltransferase
Int.J.Biochem.Cell Biol., 76, 2016
3X1G
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BU of 3x1g by Molmil
H294M mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans showing two coordination geometries at the T2Cu site
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
Authors:Fukuda, Y, Inoue, T.
Deposit date:2014-11-16
Release date:2015-11-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural evidence of the flexibility of the CuM site
To be Published
3X1E
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BU of 3x1e by Molmil
Structure of copper-containing nitrite reductase from Geobacillus thermodenitrificans without chloride
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
Authors:Fukuda, Y, Inoue, T.
Deposit date:2014-11-16
Release date:2015-11-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structural evidence of the flexibility of the CuM site
To be Published
3X1F
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BU of 3x1f by Molmil
H294M mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
Authors:Fukuda, Y, Inoue, T.
Deposit date:2014-11-16
Release date:2015-11-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural evidence of the flexibility of the CuM site
To be Published
3X1N
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BU of 3x1n by Molmil
Nitrite-bound thermostable copper nitrite reductase at 320 K
Descriptor: COPPER (II) ION, NITRITE ION, Nitrite reductase
Authors:Fukuda, Y, Inoue, T.
Deposit date:2014-11-25
Release date:2015-01-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:High-temperature and high-resolution crystallography of thermostable copper nitrite reductase.
Chem.Commun.(Camb.), 51, 2015
2E2G
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BU of 2e2g by Molmil
Crystal structure of archaeal peroxiredoxin, thioredoxin peroxidase from Aeropyrum pernix K1 (pre-oxidation form)
Descriptor: Probable peroxiredoxin
Authors:Nakamura, T, Yamamoto, T, Abe, M, Matsumura, H, Hagihara, Y, Goto, T, Yamaguchi, T, Inoue, T.
Deposit date:2006-11-13
Release date:2007-11-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate
Proc.Natl.Acad.Sci.Usa, 105, 2008
2E2M
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BU of 2e2m by Molmil
Crystal structure of archaeal peroxiredoxin, thioredoxin peroxidase from Aeropyrum pernix K1 (sulfinic acid form)
Descriptor: Probable peroxiredoxin
Authors:Nakamura, T, Yamamoto, T, Abe, M, Matsumura, H, Hagihara, Y, Goto, T, Yamaguchi, T, Inoue, T.
Deposit date:2006-11-14
Release date:2007-11-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate
Proc.Natl.Acad.Sci.Usa, 105, 2008
2CW8
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BU of 2cw8 by Molmil
Crystal structure of intein homing endonuclease II
Descriptor: Endonuclease PI-PkoII, GLYCEROL, SULFATE ION
Authors:Matsumura, H, Takahashi, H, Inoue, T, Hashimoto, H, Nishioka, M, Fujiwara, S, Takagi, M, Imanaka, T, Kai, Y.
Deposit date:2005-06-17
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
2CW7
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BU of 2cw7 by Molmil
Crystal structure of intein homing endonuclease II
Descriptor: Endonuclease PI-PkoII, SULFATE ION
Authors:Matsumura, H, Takahashi, H, Inoue, T, Hashimoto, H, Nishioka, M, Fujiwara, S, Takagi, M, Imanaka, T, Kai, Y.
Deposit date:2005-06-17
Release date:2006-04-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
2CZR
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BU of 2czr by Molmil
Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA
Descriptor: GLYCEROL, TBP-interacting protein, ZINC ION
Authors:Yamamoto, T, Matsuda, T, Inoue, T, Matsumura, H, Morikawa, M, Kanaya, S, Kai, Y.
Deposit date:2005-07-15
Release date:2006-02-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA
Protein Sci., 15, 2006
2DV6
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BU of 2dv6 by Molmil
Crystal structure of nitrite reductase from Hyphomicrobium denitrificans
Descriptor: COPPER (II) ION, Nitrite reductase, POTASSIUM ION
Authors:Nojiri, M, Xie, Y, Yamamoto, T, Inoue, T, Suzuki, S, Kai, Y.
Deposit date:2006-07-28
Release date:2007-02-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and function of a hexameric copper-containing nitrite reductase.
Proc.Natl.Acad.Sci.USA, 104, 2007
2CVD
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BU of 2cvd by Molmil
Crystal structure analysis of human hematopoietic prostaglandin D synthase complexed with HQL-79
Descriptor: 4-(BENZHYDRYLOXY)-1-[3-(1H-TETRAAZOL-5-YL)PROPYL]PIPERIDINE, GLUTATHIONE, GLYCEROL, ...
Authors:Aritake, K, Kado, Y, Inoue, T, Miyano, M, Urade, Y.
Deposit date:2005-06-02
Release date:2006-04-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural and Functional Characterization of HQL-79, an Orally Selective Inhibitor of Human Hematopoietic Prostaglandin D Synthase.
J.Biol.Chem., 281, 2006
1GTW
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BU of 1gtw by Molmil
crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter
Descriptor: 5'-D(*AP*AP*TP*GP*TP*GP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*CP*AP*CP*AP*T)-3', CAAT/ENHANCER BINDING PROTEIN BETA
Authors:Tahirov, T.H, Ogata, K.
Deposit date:2002-01-22
Release date:2004-02-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Basis for Flexible Base Recognition by C/Ebpbeta
To be Published
1GU4
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BU of 1gu4 by Molmil
Crystal structure of C/EBPBETA BZIP homodimer bound to a high affinity DNA fragment
Descriptor: 5'-D(*AP*AP*TP*AP*TP*TP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*AP*AP*TP*AP*T)-3', CAAT/ENHANCER BINDING PROTEIN BETA
Authors:Tahirov, T.H, Ogata, K.
Deposit date:2002-01-23
Release date:2003-06-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis for Flexible Base Recognition by C/Ebpbeta
To be Published
1GU5
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BU of 1gu5 by Molmil
Crystal structure of C/EBPBETA BZIP homodimer bound to a DNA fragment from the MIM-1 promoter
Descriptor: 5'-D(*AP*TP*GP*AP*TP*TP*GP*GP*CP*CP* AP*AP*CP*AP*CP*A)-3', 5'-D(*TP*TP*GP*TP*GP*TP*TP*GP*GP*CP* CP*AP*AP*TP*CP*A)-3', CAAT/ENHANCER BINDING PROTEIN BETA
Authors:Tahirov, T.H, Ogata, K.
Deposit date:2002-01-24
Release date:2003-06-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for Flexible Base Recognition by C/Ebpbeta
To be Published
1H89
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BU of 1h89 by Molmil
CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2
Descriptor: CAAT/ENHANCER BINDING PROTEIN BETA, DNA(5'-(*CP*CP*AP*GP*TP*CP*CP*GP*TP*TP*AP* AP*GP*GP*AP*TP*TP*GP*CP*GP*CP*CP*AP*CP*AP*T)-3'), DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3'), ...
Authors:Tahirov, T.H, Ogata, K.
Deposit date:2001-01-30
Release date:2002-01-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Mechanism of C-Myb-C/Ebpbeta Cooperation from Separated Sites on a Promoter
Cell(Cambridge,Mass.), 108, 2002
1H8A
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BU of 1h8a by Molmil
CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3
Descriptor: CAAT/ENHANCER BINDING PROTEIN BETA, DNA(5'-(*CP*CP*AP*GP*TP*CP*CP*GP*TP*TP*AP* AP*GP*GP*AP*TP*TP*GP*CP*GP*CP*CP*AP*CP*AP*T)-3'), DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3'), ...
Authors:Tahirov, T.H, Ogata, K.
Deposit date:2001-01-31
Release date:2002-01-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Mechanism of C-Myb-C/Ebpbeta Cooperation from Separated Sites on a Promoter
Cell(Cambridge,Mass.), 108, 2002

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