Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4MYZ
DownloadVisualize
BU of 4myz by Molmil
Structure of a class 2 docking domain complex from modules CurK and CurL of the curacin A polyketide synthase
Descriptor: CurK, CurL fusion protein
Authors:Whicher, J.R, Smaga, S.S, Smith, J.L.
Deposit date:2013-09-28
Release date:2014-01-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Cyanobacterial polyketide synthase docking domains: a tool for engineering natural product biosynthesis.
Chem.Biol., 20, 2013
4MZ0
DownloadVisualize
BU of 4mz0 by Molmil
Structure of a ketosynthase-acyltransferase di-domain from module CurL of the curacin A polyketide synthase
Descriptor: CALCIUM ION, CurL
Authors:Whicher, J.R, Smaga, S.S, Smith, J.L.
Deposit date:2013-09-28
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Cyanobacterial polyketide synthase docking domains: a tool for engineering natural product biosynthesis.
Chem.Biol., 20, 2013
4O6D
DownloadVisualize
BU of 4o6d by Molmil
West Nile Virus Non-structural protein 1 (NS1) Form 1 crystal
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NS1, ...
Authors:Akey, D.L, Smith, J.L.
Deposit date:2013-12-20
Release date:2014-02-19
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.5936 Å)
Cite:Flavivirus NS1 structures reveal surfaces for associations with membranes and the immune system.
Science, 343, 2014
4O6B
DownloadVisualize
BU of 4o6b by Molmil
Dengue Type2 Virus Non-structural protein 1 (NS1) Form 1 crystal
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Non-structural protein 1
Authors:Akey, D.L, Smith, J.L.
Deposit date:2013-12-20
Release date:2014-02-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.0005 Å)
Cite:Flavivirus NS1 structures reveal surfaces for associations with membranes and the immune system.
Science, 343, 2014
4O6C
DownloadVisualize
BU of 4o6c by Molmil
West Nile Virus Non-structural protein 1 (NS1) Form 2 crystal
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, NS1, SULFATE ION
Authors:Akey, D.L, Smith, J.L.
Deposit date:2013-12-20
Release date:2014-02-19
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.7508 Å)
Cite:Flavivirus NS1 structures reveal surfaces for associations with membranes and the immune system.
Science, 343, 2014
4MYY
DownloadVisualize
BU of 4myy by Molmil
Structure of a class 2 docking domain complex from modules CurG and CurH of the curacin A polyketide synthase
Descriptor: CurG, CurH fusion protein, SULFATE ION
Authors:Whicher, J.R, Smaga, S.S, Smith, J.L.
Deposit date:2013-09-28
Release date:2014-01-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Cyanobacterial polyketide synthase docking domains: a tool for engineering natural product biosynthesis.
Chem.Biol., 20, 2013
7UCH
DownloadVisualize
BU of 7uch by Molmil
AprA Methyltransferase 1 - GNAT in complex with Mn2+ , SAM, and Di-methyl-malonate
Descriptor: AprA Methyltransferase 1, GLYCEROL, MANGANESE (II) ION, ...
Authors:Skiba, M.A, Lao, Y, Smith, J.L.
Deposit date:2022-03-16
Release date:2022-06-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structural Basis for Control of Methylation Extent in Polyketide Synthase Metal-Dependent C -Methyltransferases.
Acs Chem.Biol., 17, 2022
9BGL
DownloadVisualize
BU of 9bgl by Molmil
Complex of Zinc Finger Antiviral Protein RBD and KHNYN CTD
Descriptor: 1,2-ETHANEDIOL, Protein KHNYN, ZINC ION, ...
Authors:Meagher, J.L, Smith, J.L.
Deposit date:2024-04-19
Release date:2025-01-22
Method:X-RAY DIFFRACTION (2.294 Å)
Cite:Functional anatomy of zinc finger antiviral protein complexes.
Nat Commun, 15, 2024
9CS9
DownloadVisualize
BU of 9cs9 by Molmil
KHNYN KH1-KH2
Descriptor: Protein KHNYN, SULFATE ION
Authors:Yeoh, Z.C, Ohi, M.D, Smith, J.L.
Deposit date:2024-07-23
Release date:2025-01-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A minimal complex of KHNYN and zinc-finger antiviral protein binds and degrades single-stranded RNA.
Proc.Natl.Acad.Sci.USA, 121, 2024
7QOG
DownloadVisualize
BU of 7qog by Molmil
Portal protein assembly of the phicrAss001 virion with C12 symmetry imposed
Descriptor: Cargo protein 1 gp45, Portal protein gp20, Ring protein 1 gp43, ...
Authors:Bayfield, O.W, Shkoporov, A.N, Yutin, N, Khokhlova, E.V, Smith, J.L.R, Hawkins, D.E.D.P, Koonin, E.V, Hill, C, Antson, A.A.
Deposit date:2021-12-24
Release date:2023-03-29
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Structural atlas of a human gut crassvirus.
Nature, 617, 2023
7QOF
DownloadVisualize
BU of 7qof by Molmil
Icosahedral capsid of the phicrAss001 virion
Descriptor: Auxiliary capsid protein gp36, Head fiber dimer protein gp29, Head fiber trimer protein gp21, ...
Authors:Bayfield, O.W, Shkoporov, A.N, Yutin, N, Khokhlova, E.V, Smith, J.L.R, Hawkins, D.E.D.P, Koonin, E.V, Hill, C, Antson, A.A.
Deposit date:2021-12-24
Release date:2023-03-29
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Structural atlas of a human gut crassvirus.
Nature, 617, 2023
7QOH
DownloadVisualize
BU of 7qoh by Molmil
Unique vertex of the phicrAss001 virion with C5 symmetry imposed
Descriptor: Auxiliary capsid protein gp36, Head fiber trimer protein gp21, MAGNESIUM ION, ...
Authors:Bayfield, O.W, Shkoporov, A.N, Yutin, N, Khokhlova, E.V, Smith, J.L.R, Hawkins, D.E.D.P, Koonin, E.V, Hill, C, Antson, A.A.
Deposit date:2021-12-24
Release date:2023-03-29
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Structural atlas of a human gut crassvirus.
Nature, 617, 2023
7QOK
DownloadVisualize
BU of 7qok by Molmil
Tail muzzle assembly of the phicrAss001 virion with C6 symmetry imposed
Descriptor: MAGNESIUM ION, Muzzle bound helix, Muzzle protein gp44, ...
Authors:Bayfield, O.W, Shkoporov, A.N, Yutin, N, Khokhlova, E.V, Smith, J.L.R, Hawkins, D.E.D.P, Koonin, E.V, Hill, C, Antson, A.A.
Deposit date:2021-12-24
Release date:2023-03-29
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.38 Å)
Cite:Structural atlas of a human gut crassvirus.
Nature, 617, 2023
7QOJ
DownloadVisualize
BU of 7qoj by Molmil
Tail barrel assembly of the phicrAss001 virion with C12 symmetry imposed
Descriptor: Cargo protein 1 gp45, MAGNESIUM ION, Portal protein gp20, ...
Authors:Bayfield, O.W, Shkoporov, A.N, Yutin, N, Khokhlova, E.V, Smith, J.L.R, Hawkins, D.E.D.P, Koonin, E.V, Hill, C, Antson, A.A.
Deposit date:2021-12-24
Release date:2023-03-29
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Structural atlas of a human gut crassvirus.
Nature, 617, 2023
7QOL
DownloadVisualize
BU of 7qol by Molmil
Tail assembly of the phicrAss001 virion with C6 symmetry imposed
Descriptor: Cargo protein 1 gp45, MAGNESIUM ION, Muzzle bound helix, ...
Authors:Bayfield, O.W, Shkoporov, A.N, Yutin, N, Khokhlova, E.V, Smith, J.L.R, Hawkins, D.E.D.P, Koonin, E.V, Hill, C, Antson, A.A.
Deposit date:2021-12-24
Release date:2023-03-29
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.33 Å)
Cite:Structural atlas of a human gut crassvirus.
Nature, 617, 2023
7QOI
DownloadVisualize
BU of 7qoi by Molmil
Unique vertex of the phicrAss001 virion
Descriptor: Auxiliary capsid protein gp36, Cargo protein 1 gp45, Head fiber trimer protein gp21, ...
Authors:Bayfield, O.W, Shkoporov, A.N, Yutin, N, Khokhlova, E.V, Smith, J.L.R, Hawkins, D.E.D.P, Koonin, E.V, Hill, C, Antson, A.A.
Deposit date:2021-12-24
Release date:2023-03-29
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Structural atlas of a human gut crassvirus.
Nature, 617, 2023
7K93
DownloadVisualize
BU of 7k93 by Molmil
DENV2 NS1 in complex with neutralizing 2B7 single chain Fab variable region (scFv)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2B7 single chain fab variable region, Non-structural protein 1
Authors:Akey, D.L, Smith, J.L.
Deposit date:2020-09-28
Release date:2020-12-23
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Structural basis for antibody inhibition of flavivirus NS1-triggered endothelial dysfunction.
Science, 371, 2021
7LO1
DownloadVisualize
BU of 7lo1 by Molmil
FAD-dependent monooxygenase AfoD from A. nidulans
Descriptor: FAD-dependent monooxygenase afoD, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
Authors:Rodriguez Benitez, A, Smith, J.L, Narayan, A.R.H.
Deposit date:2021-02-08
Release date:2022-04-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Deciphering the evolution of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction.
Proc.Natl.Acad.Sci.USA, 120, 2023
7UCI
DownloadVisualize
BU of 7uci by Molmil
SxtA Methyltransferase and decarboxylase didomain in complex with Mn2+ and SAH
Descriptor: GLYCEROL, MANGANESE (II) ION, Polyketide synthase-related protein, ...
Authors:Lao, Y, Skiba, M.A, Smith, J.L.
Deposit date:2022-03-16
Release date:2022-06-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Basis for Control of Methylation Extent in Polyketide Synthase Metal-Dependent C -Methyltransferases.
Acs Chem.Biol., 17, 2022
7UCL
DownloadVisualize
BU of 7ucl by Molmil
SxtA Methyltransferase variant F458H in complex with Mn2+ and malonate
Descriptor: MALONATE ION, MANGANESE (II) ION, Polyketide synthase-related protein
Authors:Lao, Y, Smith, J.L.
Deposit date:2022-03-16
Release date:2022-06-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structural Basis for Control of Methylation Extent in Polyketide Synthase Metal-Dependent C -Methyltransferases.
Acs Chem.Biol., 17, 2022
1OX5
DownloadVisualize
BU of 1ox5 by Molmil
TOWARDS UNDERSTANDING THE MECHANISM OF THE COMPLEX CYCLIZATION REACTION CATALYZED BY IMIDAZOLE GLYCEROPHOSPHATE SYNTHASE
Descriptor: Imidazole glycerol phosphate synthase hisHF, NICKEL (II) ION, PHOSPHORIC ACID MONO-[5-({[5-CARBAMOYL-3-(5-PHOSPHONOOXY-5-DEOXY-RIBOFURANOSYL)- 3H-IMIDAZOL-4-YLAMINO]-METHYL}-AMINO)-2,3,4-TRIHYDROXY-PENTYL] ESTER
Authors:Chaudhuri, B.N, Smith, J.L.
Deposit date:2003-04-01
Release date:2003-06-17
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Towards Understanding the Mechanism of the Complex Cyclization Reaction Catalyzed by Imidazole Glycerophosphate Synthase:Crystal Structures of a Ternary Complex and the Free Enzyme
Biochemistry, 42, 2003
1OX4
DownloadVisualize
BU of 1ox4 by Molmil
TOWARDS UNDERSTANDING THE MECHANISM OF THE COMPLEX CYCLIZATION REACTION CATALYZED BY IMIDAZOLE GLYCEROPHOSPHATE SYNTHASE
Descriptor: Imidazole glycerol phosphate synthase hisHF, NICKEL (II) ION, PYROPHOSPHATE 2-, ...
Authors:Chaudhuri, B.N, Smith, J.L.
Deposit date:2003-04-01
Release date:2003-06-17
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Towards Understanding the Mechanism of the Complex Cyclization Reaction Catalyzed by Imidazole Glycerophosphate Synthase: Crystal Structures of a Ternary Complex and the Free Enzyme
Biochemistry, 42, 2003
1OX6
DownloadVisualize
BU of 1ox6 by Molmil
TOWARDS UNDERSTANDING THE MECHANISM OF THE COMPLEX CYCLIZATION REACTION CATALYZED BY IMIDAZOLE GLYCEROPHOSPHATE SYNTHASE
Descriptor: Imidazole glycerol phosphate synthase hisHF, NICKEL (II) ION, PYROPHOSPHATE 2-, ...
Authors:Chaudhuri, B.N, Smith, J.L.
Deposit date:2003-04-01
Release date:2003-06-17
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Towards Understanding the Mechanism of the Complex Cyclization Reaction Catalyzed by Imidazole Glycerophosphate Synthase: Crystal Structures of a Ternary Complex and the Free Enzyme
Biochemistry, 42, 2003
3F5H
DownloadVisualize
BU of 3f5h by Molmil
Crystal structure of fused docking domains from PikAIII and PikAIV of the pikromycin polyketide synthase
Descriptor: SODIUM ION, Type I polyketide synthase PikAIII, Type I polyketide synthase PikAIV fusion protein
Authors:Buchholz, T.J, Geders, T.W, Bartley, F.E, Reynolds, K.A, Smith, J.L, Sherman, D.H.
Deposit date:2008-11-03
Release date:2009-01-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis for binding specificity between subclasses of modular polyketide synthase docking domains.
Acs Chem.Biol., 4, 2009
1HCZ
DownloadVisualize
BU of 1hcz by Molmil
LUMEN-SIDE DOMAIN OF REDUCED CYTOCHROME F AT-35 DEGREES CELSIUS
Descriptor: CYTOCHROME F, PROTOPORPHYRIN IX CONTAINING FE
Authors:Martinez, S.E, Huang, D, Szczepaniak, A, Cramer, W.A, Smith, J.L.
Deposit date:1996-09-18
Release date:1997-03-12
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The heme redox center of chloroplast cytochrome f is linked to a buried five-water chain.
Protein Sci., 5, 1996

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon