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3SSP
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BU of 3ssp by Molmil
Engineered low-affinity halide-binding protein derived from YFP: halide-free
Descriptor: Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-08
Release date:2012-07-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.628 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
3SRY
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BU of 3sry by Molmil
Engineered high-affinity halide-binding protein derived from YFP: halide-free
Descriptor: Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-07
Release date:2012-07-11
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.159 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
3SVB
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BU of 3svb by Molmil
Engineered medium-affinity halide-binding protein derived from YFP: fluoride complex
Descriptor: 1,2-ETHANEDIOL, Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-12
Release date:2012-07-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
3SST
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BU of 3sst by Molmil
Engineered low-affinity halide-binding protein derived from YFP: chloride complex
Descriptor: CHLORIDE ION, Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-08
Release date:2012-07-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.403 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
3THV
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BU of 3thv by Molmil
Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and ddATP-dT in Closed Conformation
Descriptor: 2',3'-dideoxyadenosine triphosphate, 5'-D(*C*AP*TP*TP*TP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(2DA))-3', ...
Authors:Wang, W, Beese, L.S.
Deposit date:2011-08-19
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.611 Å)
Cite:Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.
Proc.Natl.Acad.Sci.USA, 108, 2011
3TAP
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BU of 3tap by Molmil
Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-3) Position
Descriptor: 5'-D(*G*CP*GP*AP*TP*CP*AP*CP*GP*CP*AP*C)-3', 5'-D(*GP*A*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', DNA polymerase I, ...
Authors:Wang, W, Beese, L.S.
Deposit date:2011-08-04
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.655 Å)
Cite:Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.
Proc.Natl.Acad.Sci.USA, 108, 2011
3SSV
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BU of 3ssv by Molmil
Engineered low-affinity halide-binding protein derived from YFP: fluoride complex
Descriptor: FLUORIDE ION, Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-08
Release date:2012-07-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.861 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
3SVD
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BU of 3svd by Molmil
Engineered medium-affinity halide-binding protein derived from YFP: bromide complex
Descriptor: 1,2-ETHANEDIOL, BROMIDE ION, Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-12
Release date:2012-07-18
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
3TAQ
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BU of 3taq by Molmil
Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-4) Position
Descriptor: 5'-D(*GP*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*C*GP*AP*TP*CP*AP*CP*GP*CP*AP*CP*G)-3', DNA polymerase I, ...
Authors:Wang, W, Beese, L.S.
Deposit date:2011-08-04
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.
Proc.Natl.Acad.Sci.USA, 108, 2011
3TAN
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BU of 3tan by Molmil
Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-1) Position
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*GP*AP*CP*GP*T*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*C)-3', ...
Authors:Wang, W, Beese, L.S.
Deposit date:2011-08-04
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.
Proc.Natl.Acad.Sci.USA, 108, 2011
3SSK
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BU of 3ssk by Molmil
Engineered high-affinity halide-binding protein derived from YFP: bromide complex
Descriptor: BROMIDE ION, Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-08
Release date:2012-07-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.361 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
3TI0
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BU of 3ti0 by Molmil
Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and ddGTP-dC in Closed Conformation
Descriptor: 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*C*AP*TP*CP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3', ...
Authors:Wang, W, Beese, L.S.
Deposit date:2011-08-19
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.
Proc.Natl.Acad.Sci.USA, 108, 2011
6A2W
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BU of 6a2w by Molmil
Crystal structure of fucoxanthin chlorophyll a/c complex from Phaeodactylum tricornutum
Descriptor: (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Wang, W, Yu, L.J, Kuang, T.Y, Shen, J.R.
Deposit date:2018-06-13
Release date:2019-02-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for blue-green light harvesting and energy dissipation in diatoms.
Science, 363, 2019
7TO0
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BU of 7to0 by Molmil
Cryo-EM structure of RIG-I in complex with OHdsRNA
Descriptor: Antiviral innate immune response receptor RIG-I, OHdsRNA, ZINC ION
Authors:Wang, W, Pyle, A.M.
Deposit date:2022-01-22
Release date:2022-11-02
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The RIG-I receptor adopts two different conformations for distinguishing host from viral RNA ligands.
Mol.Cell, 82, 2022
7TNZ
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BU of 7tnz by Molmil
Cryo-EM structure of RIG-I in complex with p1dsRNA
Descriptor: Antiviral innate immune response receptor RIG-I, ZINC ION, p1dsRNA
Authors:Wang, W, Pyle, A.M.
Deposit date:2022-01-22
Release date:2022-11-02
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.54 Å)
Cite:The RIG-I receptor adopts two different conformations for distinguishing host from viral RNA ligands.
Mol.Cell, 82, 2022
4L67
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BU of 4l67 by Molmil
Crystal Structure of Catalytic Domain of PAK4
Descriptor: Serine/threonine-protein kinase PAK 4
Authors:Wang, W, Song, J.
Deposit date:2013-06-12
Release date:2013-08-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:NMR binding and crystal structure reveal that intrinsically-unstructured regulatory domain auto-inhibits PAK4 by a mechanism different for that of PAK1
Biochem.Biophys.Res.Commun., 438, 2013
7TNY
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BU of 7tny by Molmil
Cryo-EM structure of RIG-I in complex with p2dsRNA
Descriptor: Antiviral innate immune response receptor RIG-I, ZINC ION, p2dsRNA
Authors:Wang, W, Pyle, A.M.
Deposit date:2022-01-22
Release date:2022-11-02
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The RIG-I receptor adopts two different conformations for distinguishing host from viral RNA ligands.
Mol.Cell, 82, 2022
7TO2
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BU of 7to2 by Molmil
Cryo-EM structure of RIG-I bound to the internal sites of p3SLR30 (+ATP)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Antiviral innate immune response receptor RIG-I, MAGNESIUM ION, ...
Authors:Wang, W, Pyle, A.M.
Deposit date:2022-01-22
Release date:2022-11-02
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The RIG-I receptor adopts two different conformations for distinguishing host from viral RNA ligands.
Mol.Cell, 82, 2022
7TNX
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BU of 7tnx by Molmil
Cryo-EM structure of RIG-I in complex with p3dsRNA
Descriptor: Antiviral innate immune response receptor RIG-I, ZINC ION, p3dsRNAa, ...
Authors:Wang, W, Pyle, A.M.
Deposit date:2022-01-22
Release date:2022-11-02
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.54 Å)
Cite:The RIG-I receptor adopts two different conformations for distinguishing host from viral RNA ligands.
Mol.Cell, 82, 2022
7TO1
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BU of 7to1 by Molmil
Cryo-EM structure of RIG-I bound to the end of p3SLR30 (+ATP)
Descriptor: Antiviral innate immune response receptor RIG-I, ZINC ION, p3SLR30
Authors:Wang, W, Pyle, A.M.
Deposit date:2022-01-22
Release date:2022-11-02
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.66 Å)
Cite:The RIG-I receptor adopts two different conformations for distinguishing host from viral RNA ligands.
Mol.Cell, 82, 2022
8G7U
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BU of 8g7u by Molmil
Cryo-EM structure of Riplet:RIG-I:dsRNA complex (end-semi-closed end)
Descriptor: Antiviral innate immune response receptor RIG-I, E3 ubiquitin-protein ligase RNF135, ZINC ION, ...
Authors:Wang, W, Pyle, A.M.
Deposit date:2023-02-17
Release date:2023-11-15
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4 Å)
Cite:The E3 ligase Riplet promotes RIG-I signaling independent of RIG-I oligomerization.
Nat Commun, 14, 2023
8G7T
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BU of 8g7t by Molmil
Cryo-EM structure of Riplet:RIG-I:dsRNA complex (end-end)
Descriptor: Antiviral innate immune response receptor RIG-I, E3 ubiquitin-protein ligase RNF135, ZINC ION, ...
Authors:Wang, W, Pyle, A.M.
Deposit date:2023-02-17
Release date:2023-11-15
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The E3 ligase Riplet promotes RIG-I signaling independent of RIG-I oligomerization.
Nat Commun, 14, 2023
8G7V
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BU of 8g7v by Molmil
Cryo-EM structure of Riplet:RIG-I:dsRNA complex (end-inter)
Descriptor: Antiviral innate immune response receptor RIG-I, E3 ubiquitin-protein ligase RNF135, ZINC ION, ...
Authors:Wang, W, Pyle, A.M.
Deposit date:2023-02-17
Release date:2023-11-15
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:The E3 ligase Riplet promotes RIG-I signaling independent of RIG-I oligomerization.
Nat Commun, 14, 2023
1L7M
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BU of 1l7m by Molmil
HIGH RESOLUTION LIGANDED STRUCTURE OF PHOSPHOSERINE PHOSPHATASE (PI COMPLEX)
Descriptor: MAGNESIUM ION, PHOSPHATE ION, Phosphoserine Phosphatase
Authors:Wang, W, Cho, H.S, Kim, R, Jancarik, J, Yokota, H, Nguyen, H.H, Grigoriev, I.V, Wemmer, D.E, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2002-03-15
Release date:2002-04-03
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic "snapshots" of intermediate states.
J.Mol.Biol., 319, 2002
2I1L
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BU of 2i1l by Molmil
Crystal structure of the C2 form of FAD synthetase from Thermotoga maritima
Descriptor: Riboflavin kinase/FMN adenylyltransferase
Authors:Wang, W, Shin, D.H, Yokota, H, Kim, R, Kim, S.-H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2006-08-14
Release date:2006-11-07
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the C2 form of FAD synthetase from Thermotoga maritima
To be Published

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