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8Y25
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BU of 8y25 by Molmil
X-ray crystal structure of ALiS4-Streptavidine complex with 20% glycerol using a high-pressure cryocooling method
Descriptor: DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Higashiura, A, Yamamoto, A, Sugiyama, S.
Deposit date:2024-01-25
Release date:2025-01-29
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Binding competition between substrates and cryoprotectants in protein crystals directly observed by a hybrid method of in-gel crystallization and high-pressure cryo-cooling in X-ray crystallography
To Be Published
8Y29
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BU of 8y29 by Molmil
X-ray crystal structure of ALiS2-Streptavidine complex without cryo-protectant using a high-pressure cryocooling method
Descriptor: Streptavidin, methyl 3-(4-oxo-4,5-dihydrofuro[3,2-c]pyridin-2-yl)benzoate
Authors:Higashiura, A, Yamamoto, A, Sugiyama, S.
Deposit date:2024-01-25
Release date:2025-01-29
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Binding competition between substrates and cryoprotectants in protein crystals directly observed by a hybrid method of in-gel crystallization and high-pressure cryo-cooling in X-ray crystallography
To Be Published
8Y24
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BU of 8y24 by Molmil
X-ray crystal structure of ALiS4-Streptavidine complex with 10% glycerol using a high-pressure cryocooling method
Descriptor: DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Higashiura, A, Yamamoto, A, Sugiyama, S.
Deposit date:2024-01-25
Release date:2025-01-29
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Binding competition between substrates and cryoprotectants in protein crystals directly observed by a hybrid method of in-gel crystallization and high-pressure cryo-cooling in X-ray crystallography
To Be Published
8Y28
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BU of 8y28 by Molmil
X-ray crystal structure of ALiS5-Streptavidine complex with 20% glycerol using a high-pressure cryocooling method
Descriptor: DIMETHYL SULFOXIDE, GLYCEROL, Streptavidin
Authors:Higashiura, A, Yamamoto, A, Sugiyama, S.
Deposit date:2024-01-25
Release date:2025-01-29
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Binding competition between substrates and cryoprotectants in protein crystals directly observed by a hybrid method of in-gel crystallization and high-pressure cryo-cooling in X-ray crystallography
To Be Published
8Y23
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BU of 8y23 by Molmil
X-ray crystal structure of ALiS4-Streptavidine complex without cryo-protectant using a high-pressure cryocooling method
Descriptor: Streptavidin, methyl 5-(4-oxidanylidene-5~{H}-furo[3,2-c]pyridin-2-yl)pyridine-3-carboxylate
Authors:Higashiura, A, Yamamoto, A, Sugiyama, S.
Deposit date:2024-01-25
Release date:2025-01-29
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Binding competition between substrates and cryoprotectants in protein crystals directly observed by a hybrid method of in-gel crystallization and high-pressure cryo-cooling in X-ray crystallography
To Be Published
8Y2B
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BU of 8y2b by Molmil
X-ray crystal structure of ALiS2-Streptavidine complex with 20% glycerol using a high-pressure cryocooling method
Descriptor: GLYCEROL, Streptavidin, methyl 3-(4-oxo-4,5-dihydrofuro[3,2-c]pyridin-2-yl)benzoate
Authors:Higashiura, A, Yamamoto, A, Sugiyama, S.
Deposit date:2024-01-25
Release date:2025-01-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Binding competition between substrates and cryoprotectants in protein crystals directly observed by a hybrid method of in-gel crystallization and high-pressure cryo-cooling in X-ray crystallography
To Be Published
5B28
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BU of 5b28 by Molmil
The 0.90A structure of human FABP3 F16V mutant complexed with palmitic acid
Descriptor: Fatty acid-binding protein, heart, PALMITIC ACID, ...
Authors:Matsuoka, D, Sugiyama, S, Kakinouchi, K, Niiyama, M, Murata, M, Matsuoka, S.
Deposit date:2016-01-12
Release date:2017-01-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (0.9 Å)
Cite:The 0.90A structure of human FABP3 F16V mutant complexed with palmitic acid.
To Be Published
8XG6
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BU of 8xg6 by Molmil
X-ray crystal structure of Streptavidine without cryo-protectant using a high-pressure cryocooling method
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, Streptavidin, TETRAETHYLENE GLYCOL
Authors:Higashiura, A, Yamamoto, A, Sugiyama, S.
Deposit date:2023-12-15
Release date:2024-12-18
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Binding competition between substrates and cryoprotectants in protein crystals directly observed by a hybrid method of in-gel crystallization and high-pressure cryo-cooling in X-ray crystallography
To Be Published
8XG5
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BU of 8xg5 by Molmil
X-ray crystal structure of streptavidin flash-cooled in 30% PEG1000 at ambient pressure
Descriptor: DI(HYDROXYETHYL)ETHER, Streptavidin, TETRAETHYLENE GLYCOL
Authors:Higashiura, A, Yamamoto, A, Sugiyama, S.
Deposit date:2023-12-15
Release date:2024-12-18
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Binding competition between substrates and cryoprotectants in protein crystals directly observed by a hybrid method of in-gel crystallization and high-pressure cryo-cooling in X-ray crystallography
To Be Published
5B29
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BU of 5b29 by Molmil
The 1.28A structure of human FABP3 F16V mutant complexed with palmitic acid at room temperature
Descriptor: Fatty acid-binding protein, heart, PALMITIC ACID
Authors:Matsuoka, D, Sugiyama, S, Kakinouchi, K, Niiyama, M, Murata, M, Matsuoka, S.
Deposit date:2016-01-12
Release date:2017-01-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:The 1.28A structure of human FABP3 F16V mutant complexed with palmitic acid at room temperature.
To Be Published
5B27
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BU of 5b27 by Molmil
The 1.02A structure of human FABP3 M20S mutant complexed with palmitic acid
Descriptor: Fatty acid-binding protein, heart, PALMITIC ACID, ...
Authors:Matsuoka, D, Sugiyama, S, Kakinouchi, K, Niiyama, M, Murata, M, Matsuoka, S.
Deposit date:2016-01-12
Release date:2017-01-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:The 1.02A structure of human FABP3 M20S mutant complexed with palmitic acid.
To Be Published
7EWS
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BU of 7ews by Molmil
Crystal structure of arginine kinase (AK3) from the ciliate Paramecium tetraurelia
Descriptor: arginine kinase
Authors:Otsuka, Y, Yokota, J, Yano, D, Uda, K, Suzuki, T, Sugiyama, S.
Deposit date:2021-05-26
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of arginine kinase (AK3) from the ciliate Paramecium tetraurelia
To Be Published
7WC3
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BU of 7wc3 by Molmil
X-ray structure of the human adipocyte fatty acid-binding protein complexed with the fluorescent probe HA728
Descriptor: (3S)-1-(4-nitro-2,1,3-benzoxadiazol-7-yl)piperidine-3-carboxylic acid, Fatty acid-binding protein, adipocyte
Authors:Takahashi, J, Matsuoka, S, Tsuchikawa, H, Sonoyama, M, Inoue, Y, Hayashi, F, Murata, M, Sugiyama, S.
Deposit date:2021-12-18
Release date:2022-12-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:X-ray structure of the human adipocyte fatty acid-binding protein complexed with the fluorescent probe HA728
To Be Published
1WCY
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BU of 1wcy by Molmil
Crystal Structure Of Human Dipeptidyl Peptidase IV (DPPIV) Complex With Diprotin A
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Dipeptidyl peptidase IV, ...
Authors:Hiramatsu, H, Yamamoto, A, Kyono, K, Higashiyama, Y, Fukushima, C, Shima, H, Sugiyama, S, Inaka, K, Shimizu, R.
Deposit date:2004-05-07
Release date:2005-05-07
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of human dipeptidyl peptidase IV (DPPIV) complex with diprotin A
Biol.Chem., 385, 2004
3WBG
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BU of 3wbg by Molmil
Structure of the human heart fatty acid-binding protein in complex with 1-anilinonaphtalene-8-sulphonic acid
Descriptor: 8-ANILINO-1-NAPHTHALENE SULFONATE, Fatty acid-binding protein, heart
Authors:Hirose, M, Sugiyama, S, Ishida, H, Niiyama, M, Matsuoka, D, Hara, T, Sato, F, Mizohata, E, Murakami, S, Inoue, T, Matsuoka, S, Murata, M.
Deposit date:2013-05-16
Release date:2013-10-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of the human-heart fatty-acid-binding protein 3 in complex with the fluorescent probe 1-anilinonaphthalene-8-sulphonic acid
J.SYNCHROTRON RADIAT., 20, 2013
3AGV
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BU of 3agv by Molmil
Crystal structure of a human IgG-aptamer complex
Descriptor: 5'-R(*GP*GP*AP*GP*GP*(UFT)P*GP*(CFZ)P*(UFT)P*(CFZ)P*(CFZ)P*GP*AP*AP*A*GP*GP*AP*AP*(CFZ)P*(UFT)P*(CFZ)P*(CFZ)P*A)-3', CALCIUM ION, Ig gamma-1 chain C region, ...
Authors:Nomura, Y, Sugiyama, S, Sakamoto, T, Miyakawa, S, Adachi, H, Takano, K, Murakami, S, Inoue, T, Mori, Y, Nakamura, Y, Matsumura, H.
Deposit date:2010-04-08
Release date:2010-11-10
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Conformational plasticity of RNA for target recognition as revealed by the 2.15 A crystal structure of a human IgG-aptamer complex
Nucleic Acids Res., 38, 2010
7EGO
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BU of 7ego by Molmil
X-ray structure of the human heart fatty acid-binding protein complexed with the fluorescent probe HA527
Descriptor: 3-[methyl-(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]propanoic acid, Fatty acid-binding protein, heart, ...
Authors:Takabayashi, M, Yokota, J, Matsuoka, S, Tsuchikawa, H, Sonoyama, M, Inoue, Y, Hayashi, F, Sugiyama, S.
Deposit date:2021-03-24
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:X-ray structure of the human heart fatty acid-binding protein complexed with the fluorescent probe HA527
To Be Published
3VGW
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BU of 3vgw by Molmil
Crystal structure of monoAc-biotin-avidin complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-[(3aS,4S,6aR)-1-acetyl-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid, Avidin, ...
Authors:Terai, T, Maki, E, Sugiyama, S, Takahashi, Y, Matsumura, H, Mori, Y, Nagano, T.
Deposit date:2011-08-21
Release date:2011-12-28
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Rational development of caged-biotin protein-labeling agents and some applications in live cells
Chem.Biol., 18, 2011
3VHI
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BU of 3vhi by Molmil
Crystal structure of monoZ-biotin-avidin complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-{(3aS,4S,6aR)-1-[(benzyloxy)carbonyl]-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl}pentanoic acid, Avidin, ...
Authors:Terai, T, Maki, E, Sugiyama, S, Takahashi, Y, Matsumura, H, Mori, Y, Nagano, T.
Deposit date:2011-08-25
Release date:2011-12-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Rational development of caged-biotin protein-labeling agents and some applications in live cells
Chem.Biol., 18, 2011
3VHM
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BU of 3vhm by Molmil
Crystal structure of NPC-biotin-avidin complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-[(3aS,4R,6aR)-1-{[(1R)-1-(6-nitro-1,3-benzodioxol-5-yl)ethoxy]carbonyl}-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid, Avidin, ...
Authors:Terai, T, Maki, E, Sugiyama, S, Takahashi, Y, Matsumura, H, Mori, Y, Nagano, T.
Deposit date:2011-08-29
Release date:2011-12-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Rational development of caged-biotin protein-labeling agents and some applications in live cells
Chem.Biol., 18, 2011
3VKW
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BU of 3vkw by Molmil
Crystal Structure of the Superfamily 1 Helicase from Tomato Mosaic Virus
Descriptor: Replicase large subunit, SULFATE ION
Authors:Nishikiori, M, Sugiyama, S, Xiang, H, Niiyama, M, Ishibashi, K, Inoue, T, Ishikawa, M, Matsumura, H, Katoh, E.
Deposit date:2011-11-22
Release date:2012-07-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the superfamily 1 helicase from tomato mosaic virus
J.Virol., 86, 2012
3VHH
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BU of 3vhh by Molmil
Crystal structure of DiMe-biotin-avidin complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-[(3aS,4S,6aR)-1,3-dimethyl-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid, Avidin, ...
Authors:Terai, T, Maki, E, Sugiyama, S, Takahashi, Y, Matsumura, H, Mori, Y, Nagano, T.
Deposit date:2011-08-25
Release date:2011-12-28
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Rational development of caged-biotin protein-labeling agents and some applications in live cells
Chem.Biol., 18, 2011
7C3H
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BU of 7c3h by Molmil
Structure of L-lysine oxidase in complex with L-lysine
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Kondo, H, Kitagawa, M, Sugiyama, S, Imada, K.
Deposit date:2020-05-12
Release date:2020-09-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of strict substrate recognition of l-lysine alpha-oxidase from Trichoderma viride.
Protein Sci., 29, 2020
3ATZ
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BU of 3atz by Molmil
Crystal structure of TcOYE with pHBA
Descriptor: FLAVIN MONONUCLEOTIDE, P-HYDROXYBENZALDEHYDE, Prostaglandin F2a synthase
Authors:Okamoto, N, Yamaguchi, K, Mizohata, E, Tokuoka, K, Uchiyama, N, Sugiyama, S, Matsumura, H, Inaka, K, Urade, Y, Inoue, T.
Deposit date:2011-01-26
Release date:2012-02-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structural insight into the stereoselective production of PGF2(alpha) by Old Yellow Enzyme from Trypanosoma cruzi
J.Biochem., 150, 2011
3ATY
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BU of 3aty by Molmil
Crystal structure of TcOYE
Descriptor: FLAVIN MONONUCLEOTIDE, Prostaglandin F2a synthase
Authors:Yamaguchi, K, Okamoto, N, Tokuoka, K, Sugiyama, S, Uchiyama, N, Matsumura, H, Inaka, K, Urade, Y, Inoue, T.
Deposit date:2011-01-26
Release date:2011-05-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insight into the stereoselective production of PGF2(alpha) by Old Yellow Enzyme from Trypanosoma cruzi
J.Biochem., 150, 2011

238582

PDB entries from 2025-07-09

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