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RNA-Binding Affinities and Crystal Structure of Oligonucleotides containing Five-Atom Amide-Based Backbone Structures
Descriptor:	5'-D(TPTPCP(T2T)P(CBR)PTPTPC)-3', 5'-R(GPAPAPGPAPAPGPAP*A)-3', COBALT (III) ION, ...
Authors:	Pallan, P.S, Egli, M.
Deposit date:	2006-05-01
Release date:	2006-08-01
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	RNA-Binding Affinities and Crystal Structure of Oligonucleotides Containing Five-Atom Amide-Based Backbone Structures. Biochemistry, 45, 2006

Crystal Structure Analysis of the B-DNA Dodecamer CGCGAA-aU-TCGCG, with Incorporated Arabino-Uridine (aU)
Descriptor:	5'-D(CPGPCPGPAPAP(UAR)PTPCPGPCPG)-3', MAGNESIUM ION
Authors:	Egli, M, Li, F.
Deposit date:	2005-12-29
Release date:	2006-05-23
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (1.13 Å)
Cite:	2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H. Biochemistry, 45, 2006

NMR SOLUTION STRUCTURE OF A CHIMERIC OLIGONUCLEOTIDE HAIRPIN R(GGAC)D(TTCG)2'F-A(GTCC)
Descriptor:	5'-R(GPGPAPCP)D(TPTPCPGP(GFL)P(TAF)P(CFL)P(CFL))-3'
Authors:	Trempe, J.-F, Gehring, K.
Deposit date:	2000-07-18
Release date:	2001-05-30
Last modified:	2024-05-22
Method:	SOLUTION NMR
Cite:	NMR solution structure of an oligonucleotide hairpin with a 2'F-ANA/RNA stem: implications for RNase H specificity toward DNA/RNA hybrid duplexes. J.Am.Chem.Soc., 123, 2001

Accomodation of Mispair-Aligned N3T-Ethyl-N3T DNA Interstrand Crosslink
Descriptor:	DNA (5'-D(CPGPAPAPAP(TTM)PTPTPTPCPG)-3'), DNA (5'-D(CPGPAPAPAPTPTPTPTPCPG)-3')
Authors:	da Silva, M.W, Noronha, A.M, Noll, D.M, Miller, P.S, Colvin, O.M, Gamcsik, M.P.
Deposit date:	2004-01-12
Release date:	2005-01-25
Last modified:	2024-05-01
Method:	SOLUTION NMR
Cite:	Accommodation of mispair aligned N3T-ethyl-N3T DNA interstrand cross link. Biochemistry, 43, 2004