Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7XOM
DownloadVisualize
BU of 7xom by Molmil
Cryo-EM structure of occupied ring subunit 4 (OR4) of GroEL complexed with polyalanine model of UGT1A from GroEL-UGT1A double occupied ring complex
Descriptor: Chaperonin GroEL, Polyalanine model of UDP-glucuronosyltransferase 1A (UGT1A)
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOP
DownloadVisualize
BU of 7xop by Molmil
Cryo-EM structure of occupied ring subunit 1 (OR1) of GroEL from GroEL-UGT1A double occupied ring complex
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOQ
DownloadVisualize
BU of 7xoq by Molmil
Cryo-EM structure of occupied ring subunit 2 (OR2) of GroEL from GroEL-UGT1A double occupied ring complex
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOR
DownloadVisualize
BU of 7xor by Molmil
Cryo-EM structure of occupied ring subunit 3 (OR3) of GroEL from GroEL-UGT1A double occupied ring complex
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOJ
DownloadVisualize
BU of 7xoj by Molmil
Cryo-EM structure of GroEL bound to unfolded substrate (UGT1A) at 2.8 Ang. resolution (Consensus Refinement)
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOO
DownloadVisualize
BU of 7xoo by Molmil
Cryo-EM structure of empty ring subunit 2 (ER2) from GroEL-UGT1A single empty ring complex
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7VF3
DownloadVisualize
BU of 7vf3 by Molmil
Plexin B1 extracellular fragment in complex with lasso-grafted PB1m7 peptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, Plexin-B1, ...
Authors:Sugano, N.N, Hirata, K, Yamashita, K, Yamamoto, M, Arimori, T, Takagi, J.
Deposit date:2021-09-10
Release date:2022-08-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:De novo Fc-based receptor dimerizers differentially modulate PlexinB1 function.
Structure, 30, 2022
6A48
DownloadVisualize
BU of 6a48 by Molmil
Crystal structure of reelin N-terminal region
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Reelin
Authors:Nagae, M, Takagi, J.
Deposit date:2018-06-19
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural studies of reelin N-terminal region provides insights into a unique structural arrangement and functional multimerization.
J.Biochem., 169, 2021
2E26
DownloadVisualize
BU of 2e26 by Molmil
Crystal structure of two repeat fragment of reelin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ...
Authors:Yasui, N, Nogi, T, Kitao, T, Takagi, J.
Deposit date:2006-11-08
Release date:2007-05-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a receptor-binding fragment of reelin and mutational analysis reveal a recognition mechanism similar to endocytic receptors.
Proc.Natl.Acad.Sci.Usa, 104, 2007
1IJQ
DownloadVisualize
BU of 1ijq by Molmil
Crystal Structure of the LDL Receptor YWTD-EGF Domain Pair
Descriptor: LOW-DENSITY LIPOPROTEIN RECEPTOR
Authors:Jeon, H, Meng, W, Takagi, J, Eck, M.J, Springer, T.A, Blacklow, S.C.
Deposit date:2001-04-27
Release date:2001-05-23
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Implications for familial hypercholesterolemia from the structure of the LDL receptor YWTD-EGF domain pair.
Nat.Struct.Biol., 8, 2001
1L3Y
DownloadVisualize
BU of 1l3y by Molmil
INTEGRIN EGF-LIKE MODULE 3 FROM THE BETA-2 SUBUNIT
Descriptor: Integrin beta-2:CYSTEINE-RICH MODULE 3
Authors:Beglova, N, Blacklow, S.C, Takagi, J, Springer, T.A.
Deposit date:2002-03-03
Release date:2002-04-01
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Cysteine-rich module structure reveals a fulcrum for integrin rearrangement upon activation.
Nat.Struct.Biol., 9, 2002
1MQ8
DownloadVisualize
BU of 1mq8 by Molmil
Crystal structure of alphaL I domain in complex with ICAM-1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Integrin alpha-L, ...
Authors:Shimaoka, M, Xiao, T, Liu, J.-H, Yang, Y, Dong, Y, Jun, C.-D, McCormack, A, Zhang, R, Joachimiak, A, Takagi, J, Wang, J.-H, Springer, T.A.
Deposit date:2002-09-15
Release date:2003-01-14
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structures of the aL I domain and its complex with ICAM-1 reveal a shape-shifting pathway for integrin regulation
Cell(Cambridge,Mass.), 112, 2003
2ZOT
DownloadVisualize
BU of 2zot by Molmil
Crystal structure of human F-spondin reeler domain (fragment 1)
Descriptor: Spondin-1
Authors:Nagae, M, Nogi, T, Takagi, J.
Deposit date:2008-06-07
Release date:2008-10-14
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop
Acta Crystallogr.,Sect.D, 64, 2008
2ZPK
DownloadVisualize
BU of 2zpk by Molmil
Crystal structure of P20.1 Fab fragment in complex with its antigen peptide
Descriptor: GLYCEROL, IgG1-lambda P20.1 Fab (heavy chain), IgG1-lambda P20.1 Fab (light chain), ...
Authors:Nogi, T, Sanagawa, T, Takagi, J.
Deposit date:2008-07-16
Release date:2008-12-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Novel affinity tag system using structurally defined antibody-tag interaction: application to single-step protein purification
Protein Sci., 17, 2008
3A7Q
DownloadVisualize
BU of 3a7q by Molmil
Structural basis for specific recognition of reelin by its receptors
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Yasui, N, Nogi, T, Takagi, J.
Deposit date:2009-10-01
Release date:2010-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Basis for Specific Recognition of Reelin by Its Receptors
Structure, 18, 2010
3WSX
DownloadVisualize
BU of 3wsx by Molmil
SorLA Vps10p domain in ligand-free form
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHATE ION, ...
Authors:Kitago, Y, Nakata, Z, Nagae, M, Nogi, T, Takagi, J.
Deposit date:2014-03-30
Release date:2015-02-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for amyloidogenic peptide recognition by sorLA.
Nat.Struct.Mol.Biol., 22, 2015
7VG7
DownloadVisualize
BU of 7vg7 by Molmil
Plexin B1 extracellular fragment in complex with lasso-grafted PB1m6A9 peptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-B1, TRIETHYLENE GLYCOL, ...
Authors:Sugano, N.N, Hirata, K, Yamashita, K, Yamamoto, M, Arimori, T, Takagi, J.
Deposit date:2021-09-14
Release date:2022-08-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:De novo Fc-based receptor dimerizers differentially modulate PlexinB1 function.
Structure, 30, 2022
3WSZ
DownloadVisualize
BU of 3wsz by Molmil
SorLA Vps10p domain in complex with Abeta-derived peptide
Descriptor: 10-mer peptide, 2-acetamido-2-deoxy-beta-D-glucopyranose, Sortilin-related receptor
Authors:Kitago, Y, Nakata, Z, Nagae, M, Nogi, T, Takagi, J.
Deposit date:2014-03-30
Release date:2015-02-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.201 Å)
Cite:Structural basis for amyloidogenic peptide recognition by sorLA.
Nat.Struct.Mol.Biol., 22, 2015
3WSY
DownloadVisualize
BU of 3wsy by Molmil
SorLA Vps10p domain in complex with its own propeptide fragment
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Sortilin-related receptor, peptide from Sortilin-related receptor
Authors:Kitago, Y, Nakata, Z, Nagae, M, Nogi, T, Takagi, J.
Deposit date:2014-03-30
Release date:2015-02-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Structural basis for amyloidogenic peptide recognition by sorLA.
Nat.Struct.Mol.Biol., 22, 2015
3ASI
DownloadVisualize
BU of 3asi by Molmil
Alpha-Neurexin-1 ectodomain fragment; LNS5-EGF3-LNS6
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neurexin-1-alpha
Authors:Tanaka, H, Nogi, T, Yasui, N, Takagi, J.
Deposit date:2010-12-13
Release date:2011-04-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis for Variant-Specific Neuroligin-Binding by alpha-Neurexin
Plos One, 6, 2011
2ZOU
DownloadVisualize
BU of 2zou by Molmil
Crystal structure of human F-spondin reeler domain (fragment 2)
Descriptor: 1,2-ETHANEDIOL, Spondin-1
Authors:Nagae, M, Nogi, T, Takagi, J.
Deposit date:2008-06-07
Release date:2008-10-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop
Acta Crystallogr.,Sect.D, 64, 2008
3AFC
DownloadVisualize
BU of 3afc by Molmil
Mouse Semaphorin 6A extracellular domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Semaphorin-6A
Authors:Yasui, N, Nogi, T, Mihara, E, Takagi, J.
Deposit date:2010-02-26
Release date:2010-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for semaphorin signalling through the plexin receptor.
Nature, 467, 2010
3AL8
DownloadVisualize
BU of 3al8 by Molmil
Plexin A2 / Semaphorin 6A complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-A2, ...
Authors:Nogi, T, Yasui, N, Mihara, E, Takagi, J.
Deposit date:2010-07-28
Release date:2010-10-06
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural basis for semaphorin signalling through the plexin receptor.
Nature, 467, 2010
3AL9
DownloadVisualize
BU of 3al9 by Molmil
Mouse Plexin A2 extracellular domain
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-A2
Authors:Nogi, T, Yasui, N, Mihara, E, Takagi, J.
Deposit date:2010-07-28
Release date:2010-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for semaphorin signalling through the plexin receptor.
Nature, 467, 2010
3VN4
DownloadVisualize
BU of 3vn4 by Molmil
Crystal structure of the exosite-containing fragment of human ADAMTS13 (P475S mutant)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, A disintegrin and metalloproteinase with thrombospondin motifs 13, ...
Authors:Nakayama, D, Akiyama, M, Takeda, S, Kokame, K, Takagi, J, Miyata, T.
Deposit date:2011-12-21
Release date:2012-12-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural analysis and biochemical studies of ADAMTS13 P475S mutant
To be Published

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon