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4FB0
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BU of 4fb0 by Molmil
Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ...
Authors:Marcia, M, Pyle, A.M.
Deposit date:2012-05-22
Release date:2012-11-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4FAW
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BU of 4faw by Molmil
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-R(*A*UP*UP*UP*AP*UP*UP*A)-3', Group IIC intron, ...
Authors:Marcia, M, Pyle, A.M.
Deposit date:2012-05-22
Release date:2012-11-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4FAR
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BU of 4far by Molmil
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ...
Authors:Marcia, M, Pyle, A.M.
Deposit date:2012-05-22
Release date:2012-11-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4E8T
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BU of 4e8t by Molmil
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-R(*AP*UP*UP*UP*AP*UP*UP*A)-3', CALCIUM ION, ...
Authors:Marcia, M, Pyle, A.M.
Deposit date:2012-03-20
Release date:2012-11-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.34 Å)
Cite:Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4FAX
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BU of 4fax by Molmil
Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ...
Authors:Marcia, M, Pyle, A.M.
Deposit date:2012-05-22
Release date:2012-11-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
7UIN
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BU of 7uin by Molmil
CryoEM Structure of an Group II Intron Retroelement
Descriptor: AMMONIUM ION, DNA (37-MER), E.r IIC Intron, ...
Authors:Chung, K, Xu, L.
Deposit date:2022-03-29
Release date:2022-11-23
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structures of a mobile intron retroelement poised to attack its structured DNA target
Science, 378, 2022
7UIM
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BU of 7uim by Molmil
CryoEM Structure of an Group II Intron Retroelement (apo-complex)
Descriptor: AMMONIUM ION, E.r IIC Intron, Group II intron reverse transcriptase/maturase, ...
Authors:Chung, K, Xu, L.
Deposit date:2022-03-29
Release date:2022-11-23
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structures of a mobile intron retroelement poised to attack its structured DNA target
Science, 378, 2022
6M6R
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BU of 6m6r by Molmil
Crystal structure of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3) C-terminal domain with 5'-ppp 8-mer ssRNA
Descriptor: Dicer Related Helicase, RNA (5'-R(*(GTP)P*GP*CP*CP*GP*CP*CP*C)-3'), ZINC ION
Authors:Li, K, Zheng, J, Wirawan, M, Xiong, Z, Fedorova, O, Griffin, P, Plyle, A, Luo, D.
Deposit date:2020-03-16
Release date:2021-03-17
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Insights into the structure and RNA-binding specificity of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3).
Nucleic Acids Res., 49, 2021
6M6Q
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BU of 6m6q by Molmil
Crystal structure of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3) N-terminal domain
Descriptor: Dicer Related Helicase
Authors:Li, K, Zheng, J, Wirawan, M, Xiong, Z, Fedorova, O, Griffin, P, Plyle, A, Luo, D.
Deposit date:2020-03-16
Release date:2021-03-17
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Insights into the structure and RNA-binding specificity of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3).
Nucleic Acids Res., 49, 2021
6M6S
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BU of 6m6s by Molmil
Crystal structure of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3) C-terminal domain with 5'-ppp 12-mer dsRNA
Descriptor: Dicer Related Helicase, RNA (5'-R(*(GTP)P*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3'), ZINC ION
Authors:Li, K, Zheng, J, Wirawan, M, Xiong, Z, Fedorova, O, Griffin, P, Plyle, A, Luo, D.
Deposit date:2020-03-16
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Insights into the structure and RNA-binding specificity of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3).
Nucleic Acids Res., 49, 2021
5UC6
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BU of 5uc6 by Molmil
Structural insights into IL-1 alpha recognition by a naphthyl-modified aptamer that mimics IL-1RI Domain III
Descriptor: DNA (5'-D(*CP*G)-R(P*(85Y))-D(P*GP*AP*G)-R(P*(85Y)P*(85Y))-D(P*A)-R(P*(85Y))-D(P*GP*GP*G)-R(P*(85Y)P*(85Y))-D(P*AP*GP*AP*G)-R(P*(85Y))-D(P*CP*GP*(ATD))-3'), Interleukin-1 alpha, MAGNESIUM ION, ...
Authors:Ren, X, Pyle, A.
Deposit date:2016-12-21
Release date:2017-10-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for IL-1 alpha recognition by a modified DNA aptamer that specifically inhibits IL-1 alpha signaling.
Nat Commun, 8, 2017
3G78
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BU of 3g78 by Molmil
Insight into group II intron catalysis from revised crystal structure
Descriptor: Group II intron, Ligated EXON product, MAGNESIUM ION, ...
Authors:Wang, J.
Deposit date:2009-02-09
Release date:2010-02-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Inclusion of weak high-resolution X-ray data for improvement of a group II intron structure.
Acta Crystallogr.,Sect.D, 66, 2010
6Q39
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BU of 6q39 by Molmil
Complex of Arginase 2 with Example 49
Descriptor: 3-[(3~{S},4~{R})-4-azanyl-4-carboxy-1-[[(2~{S})-piperidin-2-yl]methyl]pyrrolidin-3-yl]propyl-tris(oxidanyl)boranuide, Arginase-2, mitochondrial, ...
Authors:Podjarny, A.D, Van Zandt, M.C, Cousido-Siah, A.
Deposit date:2018-12-03
Release date:2019-08-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.213 Å)
Cite:Discovery ofN-Substituted 3-Amino-4-(3-boronopropyl)pyrrolidine-3-carboxylic Acids as Highly Potent Third-Generation Inhibitors of Human Arginase I and II.
J.Med.Chem., 62, 2019
6Q37
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BU of 6q37 by Molmil
Complex of Arginase 2 with Example 23
Descriptor: 1,2-ETHANEDIOL, 3-[(3~{S},4~{R})-4-azanyl-4-carboxy-pyrrolidin-3-yl]propyl-tris(oxidanyl)boranuide, Arginase-2, ...
Authors:Podjarny, A.D, Van Zandt, M.C, Cousido-Siah, A.
Deposit date:2018-12-03
Release date:2019-08-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.211 Å)
Cite:Discovery ofN-Substituted 3-Amino-4-(3-boronopropyl)pyrrolidine-3-carboxylic Acids as Highly Potent Third-Generation Inhibitors of Human Arginase I and II.
J.Med.Chem., 62, 2019
2LPS
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BU of 2lps by Molmil
Molecular dynamics re-refinement of domain 5 of the yeast ai5(gamma) group II intron
Descriptor: RNA (34-MER)
Authors:Henriksen, N.M, Davis, D.R, Cheatham III, T.E.
Deposit date:2012-02-17
Release date:2012-08-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Molecular dynamics re-refinement of two different small RNA loop structures using the original NMR data suggest a common structure.
J.Biomol.Nmr, 53, 2012
3O8D
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BU of 3o8d by Molmil
Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, HCV NS3 protease/helicase, ...
Authors:Appleby, T.C, Somoza, J.R.
Deposit date:2010-08-02
Release date:2011-01-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Visualizing ATP-Dependent RNA Translocation by the NS3 Helicase from HCV.
J.Mol.Biol., 405, 2011
3O8C
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BU of 3o8c by Molmil
Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV
Descriptor: HCV NS3 protease/helicase, RNA (5'-R(P*UP*(5BU)P*UP*UP*UP*U)-3'), SULFATE ION, ...
Authors:Appleby, T.C, Somoza, J.R.
Deposit date:2010-08-02
Release date:2011-01-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Visualizing ATP-Dependent RNA Translocation by the NS3 Helicase from HCV.
J.Mol.Biol., 405, 2011
3O8B
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BU of 3o8b by Molmil
Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV
Descriptor: HCV NS3 protease/helicase, SULFATE ION, ZINC ION
Authors:Appleby, T.C, Somoza, J.R.
Deposit date:2010-08-02
Release date:2011-01-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Visualizing ATP-Dependent RNA Translocation by the NS3 Helicase from HCV.
J.Mol.Biol., 405, 2011
3O8R
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BU of 3o8r by Molmil
Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, HCV NS3 protease/helicase, ...
Authors:Appleby, T.C, Somoza, J.R.
Deposit date:2010-08-03
Release date:2011-01-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.304 Å)
Cite:Visualizing ATP-Dependent RNA Translocation by the NS3 Helicase from HCV.
J.Mol.Biol., 405, 2011
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