8U5W
 
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7RKC
 | | Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633 | | Descriptor: | ACETATE ION, D_3_633 | | Authors: | Kennedy, M.A, Stoddard, B.L, Hicks, D.R, Bera, A.K. | | Deposit date: | 2021-07-22 | | Release date: | 2022-05-18 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (2.35 Å) | | Cite: | De novo design of protein homodimers containing tunable symmetric protein pockets.
Proc.Natl.Acad.Sci.USA, 119, 2022
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9C7Z
 | | Hallucinated C3 protein assembly HALC3_919 | | Descriptor: | HALC3_919, TETRAETHYLENE GLYCOL | | Authors: | Ragotte, R, Bera, A, Milles, L.F, Wicky, B.I.M, Baker, D. | | Deposit date: | 2024-06-11 | | Release date: | 2025-05-21 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Designed miniprotein inhibitors potently inhibit and protect against MERS-CoV
To Be Published
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6X1K
 | | Solution NMR structure of de novo designed TMB2.3 | | Descriptor: | De novo designed transmembrane beta-barrel TMB2.3 | | Authors: | Liang, B, Vorobieva, A.A, Chow, C.M, Baker, D, Tamm, L.K. | | Deposit date: | 2020-05-19 | | Release date: | 2021-02-17 | | Last modified: | 2024-05-15 | | Method: | SOLUTION NMR | | Cite: | De novo design of transmembrane beta barrels.
Science, 371, 2021
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9DED
 | | Designed protein n8 | | Descriptor: | Design protein n8 | | Authors: | Pellock, S.J, Lauko, A, Bera, A. | | Deposit date: | 2024-08-28 | | Release date: | 2025-02-19 | | Last modified: | 2025-04-30 | | Method: | X-RAY DIFFRACTION (1.77 Å) | | Cite: | Computational design of serine hydrolases.
Science, 388, 2025
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9DEE
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9DEG
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9DEF
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9DEH
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8CUT
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8CUX
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8CWZ
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8CUU
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8CWY
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8CUS
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8CWS
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8CUV
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8CUW
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8V2D
 | | Computational Designed Nanocage O43_129 | | Descriptor: | O43_129 component A, O43_129 component B | | Authors: | Weidle, C, Kibler, R.D. | | Deposit date: | 2023-11-22 | | Release date: | 2024-03-13 | | Last modified: | 2024-04-10 | | Method: | ELECTRON MICROSCOPY (6.77 Å) | | Cite: | Blueprinting extendable nanomaterials with standardized protein blocks.
Nature, 627, 2024
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8V3B
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8UQF
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8VEI
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7UWY
 | | NMR solution structure of the De novo designed small beta-barrel protein 29_bp_sh3 | | Descriptor: | De novo designed small beta-barrel protein 29_bp_sh3 | | Authors: | Peterson, F.C, Kim, D.E, Jensen, D.R, Saleem, A, Chow, C.M, Volkman, B.F, Baker, D. | | Deposit date: | 2022-05-04 | | Release date: | 2023-03-22 | | Last modified: | 2024-05-15 | | Method: | SOLUTION NMR | | Cite: | De novo design of small beta barrel proteins.
Proc.Natl.Acad.Sci.USA, 120, 2023
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8VEA
 | | De novo designed helical oligomer sg266 | | Descriptor: | Designed helical oligomer sg266 | | Authors: | Bera, A.K, Gerben, S, Baker, D. | | Deposit date: | 2023-12-18 | | Release date: | 2025-01-15 | | Last modified: | 2025-03-26 | | Method: | X-RAY DIFFRACTION (3.3 Å) | | Cite: | Massively parallel assessment of designed protein solution properties using mass spectrometry and peptide barcoding.
Biorxiv, 2025
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8U5A
 | | Improving protein expression, stability, and function with ProteinMPNN | | Descriptor: | Designed myoglobin, PROTOPORPHYRIN IX CONTAINING FE | | Authors: | Kalvet, I, Bera, A.K, Baker, D. | | Deposit date: | 2023-09-12 | | Release date: | 2024-01-17 | | Last modified: | 2024-01-31 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Improving Protein Expression, Stability, and Function with ProteinMPNN.
J.Am.Chem.Soc., 146, 2024
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