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3AX6
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BU of 3ax6 by Molmil
Crystal structure of N5-carboxyaminoimidazole ribonucleotide synthetase from Thermotoga maritima
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Phosphoribosylaminoimidazole carboxylase, ATPase subunit
Authors:Miyazawa, R, Kanagawa, M, Baba, S, Nakagawa, N, Ebihara, A, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-03-30
Release date:2012-04-25
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of N5-carboxyaminoimidazole ribonucleotide synthetase, PurK, from thermophilic bacteria
To be Published
3AXT
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BU of 3axt by Molmil
Complex structure of tRNA methyltransferase Trm1 from Aquifex aeolicus with S-adenosyl-L-Methionine
Descriptor: Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1, S-ADENOSYLMETHIONINE, SULFATE ION, ...
Authors:Ihsanawati, Sengoku, T, Yokoyama, S, Bessho, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-04-14
Release date:2011-08-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.491 Å)
Cite:Substrate tRNA recognition mechanism of a multisite-specific tRNA methyltransferase, Aquifex aeolicus Trm1, based on the X-ray crystal structure
J.Biol.Chem., 286, 2011
3CM0
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BU of 3cm0 by Molmil
Crystal structure of adenylate kinase from Thermus thermophilus HB8
Descriptor: Adenylate kinase
Authors:Nakagawa, N, Kondo, N, Masui, R, Matsuda, Z, Iwamoto, I, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-03-20
Release date:2008-09-23
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of adenylate kinase from Thermus thermophilus HB8.
To be Published
1V5N
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BU of 1v5n by Molmil
Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
Descriptor: PDI-like Hypothetical Protein At1g60420, ZINC ION
Authors:Miyamoto, K, Tomizawa, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-25
Release date:2004-05-25
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
To be Published
2ZIN
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BU of 2zin by Molmil
Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with BocLys and an ATP analogue
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, N~6~-(tert-butoxycarbonyl)-L-lysine, ...
Authors:Yanagisawa, T, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-02-19
Release date:2008-12-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Multistep Engineering of Pyrrolysyl-tRNA Synthetase to Genetically Encode N(varepsilon)-(o-Azidobenzyloxycarbonyl) lysine for Site-Specific Protein Modification
Chem.Biol., 15, 2008
2ZKT
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BU of 2zkt by Molmil
Structure of PH0037 protein from Pyrococcus horikoshii
Descriptor: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, CALCIUM ION, ZINC ION
Authors:Lokanath, N.K, Pampa, K.J, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-03-29
Release date:2009-04-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of PH0037 protein from Pyrococcus horikoshii
To be Published
1UJO
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BU of 1ujo by Molmil
Solution Structure of the CH domain from Mouse Trangelin
Descriptor: Transgelin
Authors:Tomizawa, T, Koshiba, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-08-08
Release date:2004-09-14
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution Structure of the CH domain from Mouse Trangelin
To be Published
1V65
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BU of 1v65 by Molmil
Solution structure of the Kruppel-associated box (KRAB) domain
Descriptor: RIKEN cDNA 2610044O15
Authors:Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-27
Release date:2004-06-01
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the Kruppel-associated box (KRAB) domain
To be Published
1UL7
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BU of 1ul7 by Molmil
Solution structure of kinase associated domain 1 of mouse MAP/microtubule affinity-regulating kinase 3
Descriptor: MAP/microtubule affinity-regulating kinase 3
Authors:Tochio, N, Koshiba, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-10
Release date:2004-03-10
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the kinase-associated domain 1 of mouse microtubule-associated protein/microtubule affinity-regulating kinase 3
Protein Sci., 15, 2006
1V5K
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BU of 1v5k by Molmil
Solution structure of the CH domain from mouse EB-1
Descriptor: microtubule-associated protein, RP/EB family, member 1
Authors:Tomizawa, T, Kigawa, T, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-25
Release date:2004-05-25
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the CH domain from mouse EB-1
To be Published
1WHH
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BU of 1whh by Molmil
Solution structure of the 2nd CAP-Gly domain in mouse CLIP170-related 59kDa protein CLIPR-59
Descriptor: CLIPR-59
Authors:Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the 2nd CAP-Gly domain in mouse CLIP170-related 59kDa protein CLIPR-59
To be Published
1WLV
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BU of 1wlv by Molmil
Crystal structure of TT0310 protein from Thermus thermophilus HB8
Descriptor: ACETATE ION, CHLORIDE ION, COENZYME A, ...
Authors:Kunishima, N, Sugahara, M, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-06-29
Release date:2005-07-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
1X2R
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BU of 1x2r by Molmil
Structural basis for the defects of human lung cancer somatic mutations in the repression activity of Keap1 on Nrf2
Descriptor: Kelch-like ECH-associated protein 1, Nuclear factor erythroid 2 related factor 2, SULFATE ION
Authors:Padmanabhan, B, Tong, K.I, Nakamura, Y, Ohta, T, Scharlock, M, Kobayashi, A, Ohtsuji, M, Kang, M.-I, Yamamoto, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-04-26
Release date:2006-03-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for defects of keap1 activity provoked by its point mutations in lung cancer
Mol.Cell, 21, 2006
1WM6
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BU of 1wm6 by Molmil
Crystal structure of TT0310 protein from Thermus thermophilus HB8
Descriptor: CHLORIDE ION, phenylacetic acid degradation protein PaaI
Authors:Sugahara, M, Kunishima, N, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-07-04
Release date:2005-07-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
1WLU
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BU of 1wlu by Molmil
Crystal structure of TT0310 protein from Thermus thermophilus HB8
Descriptor: CHLORIDE ION, GLYCEROL, phenylacetic acid degradation protein PaaI
Authors:Kunishima, N, Sugahara, M, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-06-29
Release date:2005-07-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
1WN3
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BU of 1wn3 by Molmil
Crystal structure of TT0310 protein from Thermus thermophilus HB8
Descriptor: ACETATE ION, CHLORIDE ION, HEXANOYL-COENZYME A, ...
Authors:Kunishima, N, Sugahara, M, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-07-27
Release date:2005-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
1X8X
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BU of 1x8x by Molmil
Tyrosyl t-RNA Synthetase from E.coli Complexed with Tyrosine
Descriptor: SULFATE ION, TYROSINE, Tyrosyl-tRNA synthetase
Authors:Kobayashi, T, Takimura, T, Sekine, R, Kelly, V.P, Kamata, K, Sakamoto, K, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-08-19
Release date:2005-01-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Snapshots of the KMSKS Loop Rearrangement for Amino Acid Activation by Bacterial Tyrosyl-tRNA Synthetase
J.MOL.BIOL., 346, 2005
1VFG
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BU of 1vfg by Molmil
Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, RNA (75-MER), poly A polymerase
Authors:Tomita, K, Fukai, S, Ishitani, R, Ueda, T, Takeuchi, N, Vassylyev, D.G, Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-04-13
Release date:2004-08-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for template-independent RNA polymerization.
Nature, 430, 2004
3AQA
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BU of 3aqa by Molmil
Crystal structure of the human BRD2 BD1 bromodomain in complex with a BRD2-interactive compound, BIC1
Descriptor: 1-[2-(1H-benzimidazol-2-ylsulfanyl)ethyl]-3-methyl-1,3-dihydro-2H-benzimidazole-2-thione, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Bromodomain-containing protein 2
Authors:Umehara, T, Nakamura, Y, Terada, T, Shirouzu, M, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-10-27
Release date:2011-05-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Real-Time Imaging of Histone H4K12-Specific Acetylation Determines the Modes of Action of Histone Deacetylase and Bromodomain Inhibitors
Chem.Biol., 18, 2011
2YQZ
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BU of 2yqz by Molmil
Crystal Structure of Hypothetical Methyltransferase TTHA0223 from Thermus thermophilus HB8 complexed with S-adenosylmethionine
Descriptor: Hypothetical protein TTHA0223, S-ADENOSYLMETHIONINE
Authors:Kagawa, W, Kurumizaka, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-01
Release date:2007-10-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Hypothetical Methyltransferase TTHA0223 from Thermus thermophilus HB8 complexed with S-adenosylmethionine
To be published
2YRC
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BU of 2yrc by Molmil
Solution structure of the zf-Sec23_Sec24 from human Sec23A
Descriptor: Protein transport protein Sec23A, ZINC ION
Authors:Nagashima, T, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-02
Release date:2007-10-02
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the zf-Sec23_Sec24 from human Sec23A
To be Published
2YRN
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BU of 2yrn by Molmil
Solution structure of the CH domain from Human Neuron navigator 2
Descriptor: Neuron navigator 2 isoform 4
Authors:Tomizawa, T, Tochio, N, Koshiba, S, Inoue, M, Nakamura, Y, Furukawa, Y, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-02
Release date:2008-02-12
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the CH domain from Human Neuron navigator 2
To be Published
2YSA
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BU of 2ysa by Molmil
Solution structure of the zinc finger CCHC domain from the human retinoblastoma-binding protein 6 (Retinoblastoma-binding Q protein 1, RBQ-1)
Descriptor: Retinoblastoma-binding protein 6, ZINC ION
Authors:Ohnishi, S, Sato, M, Tochio, N, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the zinc finger CCHC domain from the human retinoblastoma-binding protein 6 (Retinoblastoma-binding Q protein 1, RBQ-1)
To be Published
2YQG
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BU of 2yqg by Molmil
Solution structure of the first cadherin domain from human Desmoglein-2
Descriptor: Desmoglein-2
Authors:Sano, R, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2007-10-02
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the first cadherin domain from human Desmoglein-2
To be Published
2YRW
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BU of 2yrw by Molmil
Crystal structure of GAR synthetase from Geobacillus kaustophilus
Descriptor: PHOSPHATE ION, Phosphoribosylglycinamide synthetase
Authors:Baba, S, Kanagawa, M, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010

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