Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8AN5
DownloadVisualize
BU of 8an5 by Molmil
MenAT1 toxin-antitoxin complex (rv0078a-rv0078b) from Mycobacterium tuberculosis H37Rv
Descriptor: Bacterial toxin, Conserved protein
Authors:Xu, X, Usher, B, Gutierrez, C, Barriot, R, Arrowsmith, T.J, Han, X, Redder, P, Neyrolles, O, Blower, T.R, Genevaux, P.
Deposit date:2022-08-04
Release date:2023-08-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:MenT nucleotidyltransferase toxins extend tRNA acceptor stems and can be inhibited by asymmetrical antitoxin binding.
Nat Commun, 14, 2023
7P9K
DownloadVisualize
BU of 7p9k by Molmil
BrxU, GmrSD-family Type IV restriction enzyme
Descriptor: CHLORIDE ION, DUF262 domain-containing protein, GLYCEROL, ...
Authors:Picton, D.M, Luyten, Y, Morgan, R.D, Nelson, A, Smith, D.L, Dryden, D.T.F, Hinton, J.C.D, Blower, T.R.
Deposit date:2021-07-27
Release date:2021-12-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:The phage defence island of a multidrug resistant plasmid uses both BREX and type IV restriction for complementary protection from viruses.
Nucleic Acids Res., 49, 2021
7P9M
DownloadVisualize
BU of 7p9m by Molmil
BrxU, GmrSD-family Type IV restriction enzyme
Descriptor: CHLORIDE ION, DUF262 domain-containing protein, SULFATE ION
Authors:Picton, D.M, Luyten, Y, Morgan, R.D, Nelson, A, Smith, D.L, Dryden, D.T.F, Hinton, J.C.D, Blower, T.R.
Deposit date:2021-07-27
Release date:2021-12-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:The phage defence island of a multidrug resistant plasmid uses both BREX and type IV restriction for complementary protection from viruses.
Nucleic Acids Res., 49, 2021
7QFN
DownloadVisualize
BU of 7qfn by Molmil
Human Topoisomerase II Beta ATPase ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA topoisomerase 2-beta, MAGNESIUM ION, ...
Authors:Ling, E.M, Basle, A, Cowell, I.G, Blower, T.R, Austin, C.A.
Deposit date:2021-12-06
Release date:2022-05-25
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.621 Å)
Cite:A comprehensive structural analysis of the ATPase domain of human DNA topoisomerase II beta bound to AMPPNP, ADP, and the bisdioxopiperazine, ICRF193.
Structure, 30, 2022
7QFO
DownloadVisualize
BU of 7qfo by Molmil
Human Topoisomerase II Beta ATPase AMPPNP
Descriptor: ALANINE, DNA topoisomerase 2-beta, MAGNESIUM ION, ...
Authors:Ling, E.M, Basle, A, Cowell, I.G, Blower, T.R, Austin, C.A.
Deposit date:2021-12-06
Release date:2022-05-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A comprehensive structural analysis of the ATPase domain of human DNA topoisomerase II beta bound to AMPPNP, ADP, and the bisdioxopiperazine, ICRF193.
Structure, 30, 2022
6Y56
DownloadVisualize
BU of 6y56 by Molmil
MenT4, nucleotidyltransferase toxin Rv2826c from Mycobacterium tuberculosis H37Rv
Descriptor: Uncharacterized protein
Authors:Usher, B, Blower, T.R.
Deposit date:2020-02-24
Release date:2020-09-16
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:A nucleotidyltransferase toxin inhibits growth of Mycobacterium tuberculosis through inactivation of tRNA acceptor stems.
Sci Adv, 6, 2020
7ZBG
DownloadVisualize
BU of 7zbg by Molmil
Human Topoisomerase II Beta ATPase ADP
Descriptor: 4-[(2S,3R)-3-[3,5-bis(oxidanylidene)piperazin-1-ium-1-yl]butan-2-yl]piperazin-4-ium-2,6-dione, ADENOSINE-5'-DIPHOSPHATE, DNA topoisomerase 2-beta, ...
Authors:Ling, E.M, Basle, A, Cowell, I.G, Blower, T.R, Austin, C.A.
Deposit date:2022-03-23
Release date:2022-05-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A comprehensive structural analysis of the ATPase domain of human DNA topoisomerase II beta bound to AMPPNP, ADP, and the bisdioxopiperazine, ICRF193.
Structure, 30, 2022
8VVN
DownloadVisualize
BU of 8vvn by Molmil
Cryo-EM structure of a type I ZorAB complex from Shewanella sp. strain ANA-3
Descriptor: Chemotaxis protein MotB-related protein, MotA/TolQ/ExbB proton channel domain-containing protein, SODIUM ION
Authors:Deme, J.C, Lea, S.M.
Deposit date:2024-01-31
Release date:2025-02-05
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Modularity of Zorya defense systems during phage inhibition.
Nat Commun, 16, 2025
8VVI
DownloadVisualize
BU of 8vvi by Molmil
Cryo-EM structure of a type II ZorAB complex from Sulfuricurvum kujiense
Descriptor: MotA/TolQ/ExbB proton channel domain-containing protein, Motility protein B-like N-terminal domain-containing protein
Authors:Deme, J.C, Lea, S.M.
Deposit date:2024-01-31
Release date:2025-02-05
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Modularity of Zorya defense systems during phage inhibition.
Nat Commun, 16, 2025
8W35
DownloadVisualize
BU of 8w35 by Molmil
Aca2 from Pectobacterium phage ZF40 bound to RNA
Descriptor: Anti-CRISPR associated (Aca) protein, Aca2, IR2 and IR-RBS RNA
Authors:Wilkinson, M.E, Birkholz, N, Kimanius, D, Fineran, P.C.
Deposit date:2024-02-21
Release date:2024-07-24
Last modified:2024-08-14
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:Phage anti-CRISPR control by an RNA- and DNA-binding helix-turn-helix protein.
Nature, 631, 2024
4RMO
DownloadVisualize
BU of 4rmo by Molmil
Crystal Structure of the CptIN Type III Toxin-Antitoxin System from Eubacterium rectale
Descriptor: CALCIUM ION, CptN Toxin, RNA (45-MER)
Authors:Rao, F, Voss, J.E, Short, F.L, Luisi, B.F.
Deposit date:2014-10-21
Release date:2015-09-30
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Co-evolution of quaternary organization and novel RNA tertiary interactions revealed in the crystal structure of a bacterial protein-RNA toxin-antitoxin system.
Nucleic Acids Res., 43, 2015
9EXH
DownloadVisualize
BU of 9exh by Molmil
Cryo-EM structure of the Apo E. coli BrxX methyltransferase
Descriptor: Adenine-specific methyltransferase BrxX
Authors:Adams, M.C, Ghilarov, D.
Deposit date:2024-04-08
Release date:2025-03-05
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Molecular basis of foreign DNA recognition by BREX anti-phage immunity system.
Nat Commun, 16, 2025
9EWZ
DownloadVisualize
BU of 9ewz by Molmil
Cryo-EM structure of the E. coli BrxX methyltransferase in complex with DNA
Descriptor: Adenine-specific methyltransferase BrxX, DNA (26-MER) with BREX binding site GGTAAG, MAGNESIUM ION, ...
Authors:Adams, M.C, Ghilarov, D.
Deposit date:2024-04-05
Release date:2025-03-05
Method:ELECTRON MICROSCOPY (2.22 Å)
Cite:Molecular basis of foreign DNA recognition by BREX anti-phage immunity system.
Nat Commun, 16, 2025
9EX7
DownloadVisualize
BU of 9ex7 by Molmil
Cryo-EM structure of the E. coli BrxX methyltransferase in complex with Ocr
Descriptor: Adenine-specific methyltransferase BrxX, MAGNESIUM ION, Protein Ocr, ...
Authors:Adams, M.C, Ghilarov, D.
Deposit date:2024-04-05
Release date:2025-03-05
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:Molecular basis of foreign DNA recognition by BREX anti-phage immunity system.
Nat Commun, 16, 2025
<12

 

234785

PDB entries from 2025-04-16

PDB statisticsPDBj update infoContact PDBjnumon